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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.
Term:urinary system benign neoplasm
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Accession:DOID:731 term browser browse the term
Definition:An organ system benign neoplasm that is located_in the kidneys, ureteres, bladder or urethra. (DO)
Synonyms:xref: NCI:C3431
For additional species annotation, visit the Alliance of Genome Resources.


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kidney angiomyolipoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mtor mechanistic target of rapamycin kinase treatment ISO associated with Tuberous Sclerosis RGD PMID:23054313 RGD:7245506 NCBI chr 5:158,884,856...158,994,311
Ensembl chr 5:158,884,804...158,994,311 		JBrowse link
nephroma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dicer1 dicer 1 ribonuclease III ISO DNA:mutations: : RGD PMID:24481001 RGD:149735348 NCBI chr 6:123,627,529...123,692,278
Ensembl chr 6:123,631,250...123,693,965 		JBrowse link
renal adenoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp7b ATPase copper transporting beta IAGP RGD PMID:11509115 RGD:1302456 NCBI chr16:69,952,286...70,024,404
Ensembl chr16:69,951,778...70,023,636 		JBrowse link
G Atp7bhts ATPase copper transporting beta; hepatitis IAGP RGD PMID:11509115 RGD:1302456
renal oncocytoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Flcn folliculin ISO CTD Direct Evidence: marker/mechanism CTD PMID:12204536 NCBI chr10:44,588,621...44,607,808
Ensembl chr10:44,588,624...44,607,769 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  disease 19099
    disease of cellular proliferation 7914
      benign neoplasm 2228
        organ system benign neoplasm 1297
          urinary system benign neoplasm 7
            bladder benign neoplasm + 0
            kidney benign neoplasm + 7
            ureteral benign neoplasm + 0
            urethral benign neoplasm + 0
            urinary tract papillary transitional cell benign neoplasm + 0
Path 2
Term Annotations click to browse term
  disease 19099
    disease of cellular proliferation 7914
      Neoplasms by Site 7370
        Urogenital Neoplasms 2347
          Urologic Neoplasms 737
            urinary system benign neoplasm 7
              bladder benign neoplasm + 0
              kidney benign neoplasm + 7
              ureteral benign neoplasm + 0
              urethral benign neoplasm + 0
              urinary tract papillary transitional cell benign neoplasm + 0
paths to the root