rheumatoid arthritis - Ontology Report

ABCC2

ATP binding cassette subfamily C member 2

12,670,885

12,740,124

ABCC3

ATP binding cassette subfamily C member 3

26,551,953

26,596,330

ABCC4

ATP binding cassette subfamily C member 4

45,767,033

46,013,577

ABCC5

ATP binding cassette subfamily C member 5

16,856,624

16,947,844

ABCG2

ATP binding cassette subfamily G member 2

11,443,778

11,517,674

ACAN

aggrecan

51,995,100

52,031,812

ACKR3

atypical chemokine receptor 3

47,327,921

47,339,632

ADAMTS4

ADAM metallopeptidase with thrombospondin type 1 motif 4

21,283,555

21,292,432

ADAMTS5

ADAM metallopeptidase with thrombospondin type 1 motif 5

22,242,901

22,289,453

ADIPOQ

adiponectin, C1Q and collagen domain containing

19,398,310

19,410,519

ADORA2A

adenosine A2a receptor

28,141,076

28,150,600

ADRB3

adrenoceptor beta 3

27,445,601

27,446,796

AFF3

AF4/FMR2 family member 3

42,587,173

43,111,739

AGER

advanced glycosylation end-product specific receptor

1,574,251

1,577,410

AHR

aryl hydrocarbon receptor

31,743,704

31,793,484

ALOX5

arachidonate 5-lipoxygenase

2,170,920

2,218,765

ANKRD55

ankyrin repeat domain 55

43,338,042

43,655,708

ANXA3

annexin A3

3,006,000

3,049,321

APOA4

apolipoprotein A4

16,751,588

16,754,215

ARID5B

AT-rich interaction domain 5B

13,926,759

14,105,069

ATIC

5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase

22,420,645

22,446,769

B3GNT2

UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2

62,118,643

62,147,639

B3GNT9

UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9

82,212,940

82,215,918

BAIAP2L1

BAR/IMD domain containing adaptor protein 2 like 1

10,968,100

11,055,040

BCL2A1

BCL2 related protein A1

57,451,512

57,463,692

BDKRB2

bradykinin receptor B2

64,974,588

65,005,682

BGLAP

bone gamma-carboxyglutamate protein

41,630,092

41,630,976

BGN

biglycan

121,330,371

121,334,634

BLK

BLK proto-oncogene, Src family tyrosine kinase

26,336,253

26,357,494

BMP4

bone morphogenetic protein 4

29,997,563

30,254,307

BMP6

bone morphogenetic protein 6

7,780,763

7,833,095

BTNL2

butyrophilin like 2

2,085,589

2,106,787

complement C3

53,566,226

53,598,365

CALD1

caldesmon 1

13,087,419

13,279,648

CASP7

caspase 7

24,599,866

24,630,018

CAST

calpastatin

12,920,514

13,031,974

CAT

catalase

33,383,005

33,422,447

CAV2

caveolin 2

55,437,622

55,445,481

CCL2

C-C motif chemokine ligand 2

39,008,187

39,009,932

CCL21

C-C motif chemokine ligand 21

51,375,107

51,375,790

CCL22

C-C motif chemokine ligand 22

59,039,650

59,045,519

CCL8

C-C motif chemokine ligand 8

38,949,184

38,950,702

CCN1

cellular communication network factor 1

62,443,285

62,446,246

CCN2

cellular communication network factor 2

25,508,082

25,511,058

CCR1

chemokine (C-C motif) receptor 1

42,421,356

42,427,177

CCR3

C-C motif chemokine receptor 3

42,382,380

42,398,449

CCR4

C-C motif chemokine receptor 4

3,844,072

3,847,770

CCR5

C-C motif chemokine receptor 5 (gene/pseudogene)

42,293,288

42,297,952

CCR6

C-C motif chemokine receptor 6

54,932,798

54,960,646

CD2

CD2 molecule

54,171,764

54,184,221

CD244

CD244 molecule

21,495,649

21,522,656

CD28

CD28 molecule

12,503,849

12,536,362

CD3E

CD3e molecule

15,403,724

15,415,259

CD40

CD40 molecule

33,352,992

33,383,488

CD5

CD5 molecule

55,216,415

55,235,567

CD80

CD80 molecule

23,177,136

23,208,421

CD83

CD83 molecule

13,489,046

13,507,897

CDK6

cyclin dependent kinase 6

18,178,352

18,413,869

CEBPB

CCAAT enhancer binding protein beta

36,661,294

36,663,162

CHI3L1

chitinase 3 like 1

25,620

32,954

CIITA

class II major histocompatibility complex transactivator

31,774,486

31,837,025

CLEC12A

C-type lectin domain family 12 member A

36,040,574

36,051,249

CLEC16A

C-type lectin domain containing 16A

31,560,940

31,757,100

COL2A1

collagen type II alpha 1 chain

6,756,994

6,787,733

ceruloplasmin

43,969,297

44,033,226

CRP

C-reactive protein

22,396,787

22,398,180

CSF2

colony stimulating factor 2

20,342,880

20,346,959

CTLA4

cytotoxic T-lymphocyte associated protein 4

12,647,712

12,653,874

CTSD

cathepsin D

46,010,440

46,019,457

CX3CL1

C-X3-C motif chemokine ligand 1

59,022,794

59,032,095

CXCL8

C-X-C motif chemokine ligand 8

62,435,035

62,438,354

CXCR3

C-X-C motif chemokine receptor 3

55,882,433

55,884,582

CXCR4

C-X-C motif chemokine receptor 4

38,874,650

38,877,740

DDIT4

DNA damage inducible transcript 4

22,916,718

22,918,893

DDX6

DEAD-box helicase 6

15,001,988

15,034,128

DLA-DQA1

major histocompatibility complex, class II, DQ alpha 1

2,221,181

2,227,600

DNASE1L3

deoxyribonuclease 1 like 3

32,350,138

32,379,240

DNASE2

deoxyribonuclease 2, lysosomal

49,299,236

49,301,815

DNMT1

DNA methyltransferase 1

50,872,213

50,928,352

DNMT3B

DNA methyltransferase 3 beta

22,096,386

22,123,378

EDN1

endothelin 1

11,808,892

11,815,383

ELN

elastin

6,299,524

6,331,425

ENO1

enolase 1

62,300,805

62,314,508

EPAS1

endothelial PAS domain protein 1

48,550,836

48,636,776

ESR2

estrogen receptor 2

38,645,917

38,715,347

coagulation factor II, thrombin

42,782,744

42,799,531

FAS

Fas cell surface death receptor

38,738,811

38,763,298

FASLG

Fas ligand

26,335,837

26,344,224

FCGR1A

Fc fragment of IgG, high affinity Ia, receptor (CD64)

59,073,139

59,102,023

FKBP5

FKBP prolyl isomerase 5

4,724,668

4,833,691

FOXO3

forkhead box O3

65,552,455

65,673,467

FOXP3

forkhead box P3

42,331,229

42,362,841

FPGS

folylpolyglutamate synthase

55,590,092

55,612,639

GATA3

GATA binding protein 3

28,068,143

28,098,445

GC vitamin D binding protein

60,795,305

60,828,038

GDF5

growth differentiation factor 5

24,395,699

24,400,302

GGH

gamma-glutamyl hydrolase

13,143,881

13,165,028

GIN1

gypsy retrotransposon integrase 1

8,088,719

8,116,461

GPRC5A

G protein-coupled receptor class C group 5 member A

33,438,196

33,460,062

GRK2

G protein-coupled receptor kinase 2

50,148,566

50,167,422

GRK5

G protein-coupled receptor kinase 5

29,424,350

29,636,552

GRK6

G protein-coupled receptor kinase 6

35,927,470

35,943,218

GSDME

gasdermin E

38,210,975

38,286,729

HAPLN1

hyaluronan and proteoglycan link protein 1

23,999,148

24,077,935

HCLS1

hematopoietic cell-specific Lyn substrate 1

24,901,023

24,925,710

HFE

homeostatic iron regulator

24,031,479

24,038,922

HGF

hepatocyte growth factor

21,329,688

21,410,257

HIF1A

hypoxia inducible factor 1 subunit alpha

36,614,045

36,656,692

MHC class II DLA DRB1 beta chain

2,151,409

2,164,564

HNRNPA2B1

heterogeneous nuclear ribonucleoprotein A2/B1

39,498,805

39,509,034

HOXD10

homeobox D10

19,924,352

19,927,706

HOXD11

homeobox D11

19,913,064

19,926,868

HOXD13

homeobox D13

19,901,184

19,903,837

HSD11B1

hydroxysteroid 11-beta dehydrogenase 1

8,344,380

8,409,901

HSP90AA1

heat shock protein 90 alpha family class A member 1

70,091,203

70,096,107

HSPA4

heat shock protein family A (Hsp70) member 4

21,290,603

21,363,701

HSPA5

heat shock protein family A (Hsp70) member 5

57,850,870

57,855,607

HSPA9

heat shock protein family A (Hsp70) member 9

26,122,917

26,142,458

HSPB1

heat shock protein family B (small) member 1

7,487,164

7,488,576

HSPD1

heat shock protein family D (Hsp60) member 1

7,010,421

7,025,912

IFNG

interferon gamma

10,406,866

10,411,698

IGF2

insulin like growth factor 2

46,294,036

46,311,982

IGFBP3

insulin like growth factor binding protein 3

1,021,855

1,027,604

IKZF3

IKAROS family zinc finger 3

22,643,482

22,733,988

IL10

interleukin 10

5,933,285

5,937,057

IL13

interleukin 13

20,957,870

20,961,391

IL17A

interleukin 17A

19,854,129

19,862,521

IL18

interleukin 18

20,972,742

20,995,327

IL19

interleukin 19

6,000,994

6,006,959

IL1A

interleukin 1 alpha

36,969,581

36,979,445

IL1B

interleukin 1 beta

37,019,329

37,033,388

IL1RN

interleukin 1 receptor antagonist

37,236,690

37,250,424

IL2

interleukin 2

17,750,780

17,756,394

IL20

interleukin 20

6,019,879

6,022,707

IL21R

interleukin 21 receptor

19,181,846

19,217,915

IL23A

interleukin 23 subunit alpha

635,384

640,715

IL23R

interleukin 23 receptor

43,307,422

43,369,806

IL2RA

interleukin 2 receptor subunit alpha

29,892,130

29,948,926

IL2RB

interleukin 2 receptor subunit beta

27,370,797

27,388,775

IL3

interleukin 3

20,330,480

20,332,668

IL4R

interleukin 4 receptor

19,254,183

19,280,973

IL5

interleukin 5

20,825,469

20,827,269

interleukin 6

36,474,268

36,478,519

IL6R

interleukin 6 receptor

42,877,731

42,920,149

IL6ST

interleukin 6 signal transducer

43,214,050

43,273,014

IRAK1

interleukin 1 receptor associated kinase 1

121,853,340

121,862,582

IRF5

interferon regulatory factor 5

7,724,168

7,734,976

IRF8

interferon regulatory factor 8

66,789,264

66,812,477

ITGA6

integrin subunit alpha 6

16,777,363

16,858,725

JAK2

Janus kinase 2

93,321,055

93,438,898

KIF5A

kinesin family member 5A

1,637,007

1,666,790

LCN2

lipocalin 2

55,328,118

55,342,535

LHX2

LIM homeobox 2

58,825,505

58,859,311

LOC100856137

HLA class II histocompatibility antigen, DQ beta 2 chain

2,244,820

2,250,822

LOC477699

alpha-2-macroglobulin

36,654,328

36,695,775

LOC478984

low affinity immunoglobulin gamma Fc region receptor III

21,054,870

21,060,948

LOC481722

complement C4-A

1,433,185

1,448,056

LOC487740

trifunctional purine biosynthetic protein adenosine-3

29,032,399

29,063,706

LRRK2

leucine rich repeat kinase 2

13,282,824

13,420,917

LY96

lymphocyte antigen 96

22,493,757

22,515,147

MAB21L2

mab-21 like 2

48,538,912

48,541,651

MARCKS

myristoylated alanine rich protein kinase C substrate

69,980,003

69,987,150

MBD2

methyl-CpG binding domain protein 2

21,232,260

21,283,687

MBD4

methyl-CpG binding domain 4, DNA glycosylase

5,716,162

5,725,068

MDK

midkine

55,100,491

55,101,081

MGARP

mitochondria localized glutamic acid rich protein

3,411,718

3,423,589

MMEL1

membrane metalloendopeptidase like 1

57,434,880

57,467,973

MMP1

matrix metallopeptidase 1

28,978,385

28,986,644

MMP12

matrix metallopeptidase 12

28,918,626

28,933,404

MMP14

matrix metallopeptidase 14

3,183,419

3,193,079

MMP2

matrix metallopeptidase 2

60,471,092

60,492,991

MMP3

matrix metallopeptidase 3 (stromelysin 1, progelatinase)

28,949,631

28,957,915

MMP8

matrix metallopeptidase 8

29,036,381

29,047,180

MMP9

matrix metallopeptidase 9

33,274,260

33,281,116

MPO

myeloperoxidase

32,927,483

32,938,007

MTHFR

methylenetetrahydrofolate reductase

84,445,526

84,457,435

NCF1

neutrophil cytosolic factor 1

5,702,222

5,719,515

NCF2

neutrophil cytosolic factor 2

16,914,629

16,946,370

ND1

NADH dehydrogenase subunit 1

2,747

3,702

NDUFA4L2

NDUFA4 mitochondrial complex associated like 2

1,362,479

1,365,203

NFKBIE

NFKB inhibitor epsilon

12,668,664

12,674,146

NFKBIL1

NFKB inhibitor like 1

1,048,393

1,057,458

NOTCH4

notch receptor 4

1,585,249

1,608,721

NPSR1

neuropeptide S receptor 1

46,465,169

46,610,256

NR3C1

nuclear receptor subfamily 3 group C member 1

38,124,568

38,242,510

NR4A3

nuclear receptor subfamily 4 group A member 3

56,806,506

56,846,997

PADI4

peptidyl arginine deiminase 4

80,912,814

80,942,767

PDGFB

platelet derived growth factor subunit B

25,798,877

25,819,422

PGF

placental growth factor

48,059,554

48,110,534

PLA2G7

phospholipase A2 group VII

14,866,229

14,908,230

PLAUR

plasminogen activator, urokinase receptor

111,476,804

111,490,876

PLB1

phospholipase B1

22,420,679

22,558,318

PLD4

phospholipase D family member 4

72,410,076

72,417,681

PLEK

pleckstrin

67,395,972

67,421,247

PON1

paraoxonase 1

20,565,620

20,600,774

POU3F1

POU class 3 homeobox 1

4,547,868

4,549,469

PRDM1

PR/SET domain 1

63,454,242

63,495,278

PRKCQ

protein kinase C theta

29,319,123

29,505,338

PTGS1

prostaglandin-endoperoxide synthase 1

60,195,118

60,216,847

PTGS2

prostaglandin-endoperoxide synthase 2

19,668,079

19,674,903

PTK2

protein tyrosine kinase 2

35,302,439

35,541,336

PTPN2

protein tyrosine phosphatase non-receptor type 2

78,160,564

78,252,382

PTPN22

protein tyrosine phosphatase non-receptor type 22

51,623,628

51,683,039

PTPRC

protein tyrosine phosphatase receptor type C

4,155,876

4,282,151

PXK

PX domain containing serine/threonine kinase like

32,138,320

32,272,767

RAB8A

RAB8A, member RAS oncogene family

46,334,601

46,351,907

RAP2A

RAP2A, member of RAS oncogene family

47,777,621

47,814,061

RASGRP1

RAS guanyl releasing protein 1

5,840,901

5,914,804

RBPJ

recombination signal binding protein for immunoglobulin kappa J region

84,060,417

84,286,008

RCAN1

regulator of calcineurin 1

29,908,046

30,002,412

REL

REL proto-oncogene, NF-kB subunit

60,990,264

61,030,162

RGMB

repulsive guidance molecule BMP co-receptor b

11,407,426

11,427,317

RUNX1

RUNX family transcription factor 1

30,170,859

30,420,344

RUNX2

RUNX family transcription factor 2

13,723,535

13,842,565

SEMA3C

semaphorin 3C

20,457,683

20,748,008

SLC11A1

solute carrier family 11 member 1

25,039,203

25,047,461

SLC22A4

solute carrier family 22 member 4

20,599,281

20,643,893

SLC25A12

solute carrier family 25 member 12

16,185,011

16,391,080

SMS

spermine synthase

17,749,020

17,803,351

SOD2

superoxide dismutase 2

48,943,472

48,955,158

SPP1

secreted phosphoprotein 1

11,354,070

11,362,325

SPRED2

sprouty related EVH1 domain containing 2

64,764,275

64,815,937

ST6GALNAC5

ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5

69,706,717

69,867,760

STAT1

signal transducer and activator of transcription 1

1,513,438

1,549,837

STAT3

signal transducer and activator of transcription 3

20,539,660

20,614,631

STAT4

signal transducer and activator of transcription 4

1,566,563

1,685,378

STS

steroid sulfatase

4,396,867

4,470,093

SUPT20H

SPT20 homolog, SAGA complex component

3,658,528

3,698,487

TAGAP

T cell activation RhoGTPase activating protein

48,382,688

48,392,977

TAP2

transporter 2, ATP binding cassette subfamily B member

2,407,512

2,417,469

TFPI2

tissue factor pathway inhibitor 2

19,399,259

19,403,890

THBD

thrombomodulin

599,773

601,649

TLE3

TLE family member 3, transcriptional corepressor

33,803,719

33,895,204

TLR2

toll like receptor 2

51,454,557

51,465,429

TMPO

thymopoietin

37,923,392

37,959,979

TNF

tumor necrosis factor

1,074,561

1,076,425

TNFAIP2

TNF alpha induced protein 2

70,965,776

70,977,807

TNFAIP3

TNF alpha induced protein 3

30,247,432

30,262,992

TNFRSF11B

TNF receptor superfamily member 11b

18,155,765

18,183,263

TNFRSF14

TNF receptor superfamily member 14

57,386,190

57,416,864

TNFRSF1A

TNF receptor superfamily member 1A

38,641,837

38,654,693

TNFSF14

TNF superfamily member 14

53,604,101

53,607,522

TRAF1

TNF receptor associated factor 1

73,920,729

73,939,644

TRAF6

TNF receptor associated factor 6

31,674,242

31,689,160

TXNDC5

thioredoxin domain containing 5

7,834,135

7,854,836

TXNIP

thioredoxin interacting protein

58,775,588

58,779,730

TYK2

tyrosine kinase 2

50,747,145

50,770,008

TYMS

thymidylate synthetase

67,487,927

67,497,747

VDR

vitamin D receptor

6,852,915

6,909,466

VEGFA

vascular endothelial growth factor A

12,209,032

12,224,978

VIM

vimentin

19,671,316

19,679,367

ZAP70

zeta chain of T cell receptor associated protein kinase 70

44,887,416

44,913,845

ZFP36

ZFP36 ring finger protein

113,815,972

113,818,093

adult-onset Still's disease

Symbol

Object Name

JBrowse

Chr

Start

Stop

Reference

HGF

hepatocyte growth factor

21,329,688

21,410,257

VEGFA

vascular endothelial growth factor A

12,209,032

12,224,978

Juvenile Pauciarticular Chronic Arthritis

Symbol

Object Name

JBrowse

Chr

Start

Stop

Reference

MHC class II DLA DRB1 beta chain

2,151,409

2,164,564

juvenile rheumatoid arthritis

Symbol

Object Name

JBrowse

Chr

Start

Stop

Reference

ACPP

acid phosphatase, prostate

29,294,641

29,353,970

ACRBP

acrosin binding protein

38,380,244

38,388,502

ADCY7

adenylate cyclase 7

65,003,891

65,034,812

ALOX12

arachidonate 12-lipoxygenase, 12S type

32,026,193

32,038,698

ANKRD9

ankyrin repeat domain 9

70,441,493

70,445,555

APOBEC3Z1

apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3Z1

AQP9

aquaporin 9

23,223,413

23,271,893

AREG

amphiregulin

62,925,761

62,936,753

ASAP1

ArfGAP with SH3 domain, ankyrin repeat and PH domain 1

27,111,785

27,468,476

AVL9

AVL9 cell migration associated

44,881,279

44,914,680

B4GALT5

beta-1,4-galactosyltransferase 5

36,220,973

36,241,482

BEND2

BEN domain containing 2

14,263,152

14,324,882

BTG1

BTG anti-proliferation factor 1

32,646,520

32,648,222

BTG3

BTG anti-proliferation factor 3

14,079,228

14,117,347

C11H9orf72

chromosome 11 C9orf72 homolog

45,664,942

45,688,777

C1H9orf3

chromosome 1 open reading frame, human C9orf3

71,770,687

72,009,374

C37H2orf88

chromosome 37 C2orf88 homolog

611,530

840,144

C8B

complement C8 beta chain

52,535,359

52,574,872

CALD1

caldesmon 1

13,087,419

13,279,648

CAMSAP1

calmodulin regulated spectrin associated protein 1

49,458,701

49,523,056

CCR5

C-C motif chemokine receptor 5 (gene/pseudogene)

42,293,288

42,297,952

CD14

CD14 molecule

35,790,505

35,792,967

CD83

CD83 molecule

13,489,046

13,507,897

CD8B

CD8b molecule

38,342,897

38,358,127

CIITA

class II major histocompatibility complex transactivator

31,774,486

31,837,025

CLU

clusterin

29,982,811

29,999,565

CMTM2

CKLF like MARVEL transmembrane domain containing 2

82,679,457

82,696,686

CREM

cAMP responsive element modulator

1,755,189

1,828,746

CRP

C-reactive protein

22,396,787

22,398,180

CTLA4

cytotoxic T-lymphocyte associated protein 4

12,647,712

12,653,874

CTTN

cortactin

47,932,367

47,960,732

CXCR2

C-X-C motif chemokine receptor 2

24,831,351

24,846,387

CXCR4

C-X-C motif chemokine receptor 4

38,874,650

38,877,740

DAPK1

death associated protein kinase 1

72,278,939

72,448,907

DDIT3

DNA damage inducible transcript 3

1,606,693

1,612,410

DUSP1

dual specificity phosphatase 1

39,588,833

39,591,065

DUSP2

dual specificity phosphatase 2

34,586,635

34,589,076

DYSF

dysferlin

51,011,197

51,228,969

EGF

epidermal growth factor

30,073,541

30,166,904

EGR1

early growth response 1

26,046,195

26,049,806

ELF2

E74 like ETS transcription factor 2

3,482,845

3,580,380

ETNK1

ethanolamine kinase 1

24,561,708

24,624,794

ETV6

ETS variant transcription factor 6

34,351,206

34,587,060

FAM20A

FAM20A golgi associated secretory pathway pseudokinase

15,205,887

15,218,873

FAXDC2

fatty acid hydroxylase domain containing 2

54,962,585

54,988,756

FCGR1A

Fc fragment of IgG, high affinity Ia, receptor (CD64)

59,073,139

59,102,023

FCHSD2

FCH and double SH3 domains 2

25,082,864

25,399,754

FOS

Fos proto-oncogene, AP-1 transcription factor subunit

48,330,856

48,334,273

FOSB

FosB proto-oncogene, AP-1 transcription factor subunit

110,088,686

110,092,818

FOSL2

FOS like 2, AP-1 transcription factor subunit

22,340,469

22,364,994

FOXP1

forkhead box P1

20,438,631

21,020,516

GADD45A

growth arrest and DNA damage inducible alpha

77,393,026

77,396,473

GMPR

guanosine monophosphate reductase

15,400,937

15,449,157

GNG11

G protein subunit gamma 11

19,426,916

19,431,232

GP1BB

glycoprotein Ib platelet subunit beta

29,567,437

29,568,627

HBEGF

heparin binding EGF like growth factor

35,551,248

35,563,310

HERPUD2

HERPUD family member 2

47,251,733

47,284,519

HFE

homeostatic iron regulator

24,031,479

24,038,922

MHC class II DLA DRB1 beta chain

2,151,409

2,164,564

HSPD1

heat shock protein family D (Hsp60) member 1

7,010,421

7,025,912

IGF1R

insulin like growth factor 1 receptor

41,795,337

42,096,255

IL1A

interleukin 1 alpha

36,969,581

36,979,445

IL1RN

interleukin 1 receptor antagonist

37,236,690

37,250,424

IL2

interleukin 2

17,750,780

17,756,394

interleukin 6

36,474,268

36,478,519

ITGA2B

integrin subunit alpha 2b

19,049,643

19,064,019

ITGB5

integrin subunit beta 5

27,797,204

27,912,558

JMJD1C

jumonji domain containing 1C

15,006,670

15,261,139

JUN

Jun proto-oncogene, AP-1 transcription factor subunit

50,966,698

50,968,939

KAT6B

lysine acetyltransferase 6B

25,131,580

25,303,355

KCNJ15

potassium inwardly rectifying channel subfamily J member 15

33,314,061

33,388,165

KLF4

Kruppel like factor 4

62,881,840

62,886,676

KRAS

KRAS proto-oncogene, GTPase

22,261,753

22,296,704

LOC100856137

HLA class II histocompatibility antigen, DQ beta 2 chain

2,244,820

2,250,822

LOC111093989

histone H2A type 1-B/E

23,990,768

23,991,294

LOC476900

membrane-spanning 4-domains subfamily A member 4A

50,598,991

50,614,428

LPP

LIM domain containing preferred translocation partner in lipoma

20,538,580

21,157,978

MAD1L1

mitotic arrest deficient 1 like 1

14,889,126

15,236,194

MAFF

MAF bZIP transcription factor F

26,475,478

26,486,109

MAML2

mastermind like transcriptional coactivator 2

4,824,377

5,166,859

MAP2

microtubule associated protein 2

17,316,899

17,611,360

MAPK1

mitogen-activated protein kinase 1

31,013,607

31,132,998

MBL2

mannose binding lectin 2

29,419,886

29,424,377

MEX3C

mex-3 RNA binding family member C

23,818,790

23,838,106

MSN

moesin

50,708,913

50,775,404

MTSS1

MTSS I-BAR domain containing 1

22,633,001

22,794,960

MYZAP

myocardial zonula adherens protein

22,760,852

22,850,293

NDEL1

nudE neurodevelopment protein 1 like 1

33,187,614

33,244,483

NR4A2

nuclear receptor subfamily 4 group A member 2

2,546,237

2,554,559

NR4A3

nuclear receptor subfamily 4 group A member 3

56,806,506

56,846,997

NRG1

neuregulin 1

31,697,958

32,771,888

OLR1

oxidized low density lipoprotein receptor 1

35,828,852

35,838,748

OSM

oncostatin M

23,421,787

23,439,332

PACSIN2

protein kinase C and casein kinase substrate in neurons 2

22,512,058

22,648,553

PCYT1B

phosphate cytidylyltransferase 1, choline, beta

20,076,298

20,207,837

PER1

period circadian regulator 1

32,957,517

32,972,368

PGM5

phosphoglucomutase 5

88,823,883

89,011,091

PLAUR

plasminogen activator, urokinase receptor

111,476,804

111,490,876

PLK2

polo like kinase 2

45,359,865

45,365,496

PLOD2

procollagen-lysine,2-oxoglutarate 5-dioxygenase 2

41,290,183

41,382,917

PROS1

protein S

1,628,074

1,691,441

PTPN22

protein tyrosine phosphatase non-receptor type 22

51,623,628

51,683,039

R3HDM2

R3H domain containing 2

1,377,664

1,504,008

RASGEF1B

RasGEF domain family member 1B

5,545,489

6,090,119

RBM47

RNA binding motif protein 47

71,985,725

72,135,271

RERE

arginine-glutamic acid dipeptide repeats

61,868,288

62,249,009

RHOBTB1

Rho related BTB domain containing 1

12,971,624

13,089,520

RNF103

ring finger protein 103

38,549,838

38,566,613

SELP

selectin P

28,956,428

28,997,266

SH2D2A

SH2 domain containing 2A

41,186,721

41,195,987

SH3BGRL2

SH3 domain binding glutamate rich protein like 2

40,579,997

40,656,376

SIK1

salt inducible kinase 1

37,455,130

37,466,829

SIPA1L1

signal induced proliferation associated 1 like 1

44,916,309

45,260,197

SLC11A1

solute carrier family 11 member 1

25,039,203

25,047,461

SLC22A16

solute carrier family 22 member 16

67,110,606

67,167,812

SLC26A2

solute carrier family 26 member 2

59,068,601

59,090,803

SLC2A3

solute carrier family 2 member 3

37,297,932

37,309,604

SMAD3

SMAD family member 3

31,246,313

31,360,098

STAB1

stabilin 1

37,249,744

37,276,642

STAT3

signal transducer and activator of transcription 3

20,539,660

20,614,631

STIM1

stromal interaction molecule 1

26,394,592

26,594,764

TCF7L2

transcription factor 7 like 2

23,966,079

24,162,775

TFDP1

transcription factor Dp-1

60,863,541

60,897,491

TFPI

tissue factor pathway inhibitor

29,457,131

29,546,455

THBD

thrombomodulin

599,773

601,649

THBS1

thrombospondin 1

6,770,212

6,786,875

TNFAIP6

TNF alpha induced protein 6

52,607,598

52,623,799

TNFAIP8

TNF alpha induced protein 8

8,624,106

8,685,389

TNIK

TRAF2 and NCK interacting kinase

35,426,716

35,727,308

TTLL5

tubulin tyrosine ligase like 5

48,651,766

48,920,733

UBE2E1

ubiquitin conjugating enzyme E2 E1

19,863,136

19,937,272

UBE3C

ubiquitin protein ligase E3C

19,590,115

19,716,664

UHRF1BP1L

UHRF1 binding protein 1 like

39,215,209

39,311,999

WASF3

WASP family member 3

12,804,485

12,881,988

WWOX

WW domain containing oxidoreductase

72,298,254

73,243,667

ZFAND3

zinc finger AN1-type containing 3

6,819,403

7,140,144

ZFC3H1

zinc finger C3H1-type containing

13,159,286

13,216,561

Sjogren's syndrome

Symbol

Object Name

JBrowse

Chr

Start

Stop

Reference

AIRE

autoimmune regulator

38,139,513

38,149,294

APOE

apolipoprotein E

110,525,717

110,528,534

B9D2

B9 domain containing 2

112,621,832

112,627,726

BDNF

brain derived neurotrophic factor

48,191,580

48,243,699

BST2

bone marrow stromal cell antigen 2

45,383,757

45,387,420

complement C3

53,566,226

53,598,365

CAST

calpastatin

12,920,514

13,031,974

CCR5

C-C motif chemokine receptor 5 (gene/pseudogene)

42,293,288

42,297,952

CCR7

C-C motif chemokine receptor 7

22,077,976

22,092,818

CD40LG

CD40 ligand

107,001,421

107,023,007

CRP

C-reactive protein

22,396,787

22,398,180

CTLA4

cytotoxic T-lymphocyte associated protein 4

12,647,712

12,653,874

CYP19A1

cytochrome P450 family 19 subfamily A member 1

16,954,020

17,056,728

CYP1A1

cytochrome P450 family 1 subfamily A member 1

37,793,277

37,799,535

DGKQ

diacylglycerol kinase theta

91,544,350

91,554,494

E2F1

E2F transcription factor 1

22,895,149

22,904,689

FAS

Fas cell surface death receptor

38,738,811

38,763,298

GDNF

glial cell derived neurotrophic factor

70,966,694

70,991,860

GTF2I

general transcription factor IIi

5,726,652

5,840,740

MHC class II DLA DRB1 beta chain

2,151,409

2,164,564

HMOX1

heme oxygenase 1

28,744,404

28,751,544

HNRNPH1

heterogeneous nuclear ribonucleoprotein H1

2,050,753

2,059,999

ICAM1

intercellular adhesion molecule 1

50,818,715

50,827,914

ID3

inhibitor of DNA binding 3, HLH protein

75,880,659

75,881,786

IFNG

interferon gamma

10,406,866

10,411,698

IL10

interleukin 10

5,933,285

5,937,057

IL12A

interleukin 12A

26,125,529

26,133,546

IL13

interleukin 13

20,957,870

20,961,391

IL17A

interleukin 17A

19,854,129

19,862,521

IL18

interleukin 18

20,972,742

20,995,327

IL1RN

interleukin 1 receptor antagonist

37,236,690

37,250,424

IL2

interleukin 2

17,750,780

17,756,394

IL23R

interleukin 23 receptor

43,307,422

43,369,806

IL2RA

interleukin 2 receptor subunit alpha

29,892,130

29,948,926

IL4

interleukin 4

20,972,693

20,981,539

interleukin 6

36,474,268

36,478,519

IRAK1BP1

interleukin 1 receptor associated kinase 1 binding protein 1

39,857,331

39,883,471

ITSN2

intersectin 2

18,627,543

18,756,669

LOC100856137

HLA class II histocompatibility antigen, DQ beta 2 chain

2,244,820

2,250,822

LOC476718

mucin-16

51,790,036

51,876,801

LTA

lymphotoxin alpha

1,070,608

1,073,053

MAP3K14

mitogen-activated protein kinase kinase kinase 14

18,255,416

18,302,405

MMP3

matrix metallopeptidase 3 (stromelysin 1, progelatinase)

28,949,631

28,957,915

MMP9

matrix metallopeptidase 9

33,274,260

33,281,116

MUC19

mucin 19, oligomeric

13,109,208

13,253,506

MUC5AC

mucin 5AC, oligomeric mucus/gel-forming

45,471,232

45,498,961

NCF1

neutrophil cytosolic factor 1

5,702,222

5,719,515

NFKBIA

NFKB inhibitor alpha

14,100,203

14,103,453

PHIP

pleckstrin homology domain interacting protein

39,899,738

40,015,795

PON1

paraoxonase 1

20,565,620

20,600,774

PRDM1

PR/SET domain 1

63,454,242

63,495,278

PTPN22

protein tyrosine phosphatase non-receptor type 22

51,623,628

51,683,039

PTTG1

PTTG1 regulator of sister chromatid separation, securin

50,301,868

50,309,636

RORC

RAR related orphan receptor C

60,821,498

60,842,485

SELP

selectin P

28,956,428

28,997,266

ST14

suppression of tumorigenicity 14

4,652,493

4,666,728

STAT4

signal transducer and activator of transcription 4

1,566,563

1,685,378

THBS1

thrombospondin 1

6,770,212

6,786,875

TNF

tumor necrosis factor

1,074,561

1,076,425

TNFAIP3

TNF alpha induced protein 3

30,247,432

30,262,992

TNFSF13B

TNF superfamily member 13b

57,036,307

57,069,053

TNIP1

TNFAIP3 interacting protein 1

58,150,734

58,200,158

TRAF3IP2

TRAF3 interacting protein 2

68,029,861

68,070,901

VIM

vimentin

19,671,316

19,679,367

VIP

vasoactive intestinal peptide

42,941,655

42,950,160

Systemic Juvenile Rheumatoid Arthritis

Symbol

Object Name

JBrowse

Chr

Start

Stop

Reference

interleukin 6

36,474,268

36,478,519

IL6R

interleukin 6 receptor

42,877,731

42,920,149