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ONTOLOGY REPORT - ANNOTATIONS


Term:viral encephalitis
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Accession:DOID:646 term browser browse the term
Definition:Inflammation of brain parenchymal tissue as a result of viral infection. Encephalitis may occur as primary or secondary manifestation of TOGAVIRIDAE INFECTIONS; HERPESVIRIDAE INFECTIONS; ADENOVIRIDAE INFECTIONS; FLAVIVIRIDAE INFECTIONS; BUNYAVIRIDAE INFECTIONS; PICORNAVIRIDAE INFECTIONS; PARAMYXOVIRIDAE INFECTIONS; ORTHOMYXOVIRIDAE INFECTIONS; RETROVIRIDAE INFECTIONS; and ARENAVIRIDAE INFECTIONS.
Synonyms:exact_synonym: epidemic encephalitides;   epidemic encephalitis;   viral infectious encephalomyelitis
 primary_id: MESH:D018792
 alt_id: DOID:9001940;   RDO:0004052
 xref: NCI:C34576
For additional species annotation, visit the Alliance of Genome Resources.


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viral encephalitis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adrb2 adrenoceptor beta 2 JBrowse link 18 57,513,792 57,515,834 RGD:11554173
G Becn1 beclin 1 JBrowse link 10 89,209,944 89,225,297 RGD:6483316
G Ccr1 C-C motif chemokine receptor 1 JBrowse link 8 132,996,646 133,002,201 RGD:5688146
G Cd274 CD274 molecule JBrowse link 1 247,519,890 247,539,659 RGD:6893671
G E2f1 E2F transcription factor 1 JBrowse link 3 150,062,895 150,073,721 RGD:10401094
G Mmp9 matrix metallopeptidase 9 JBrowse link 3 161,413,410 161,421,473 RGD:5130920
G Oprm1 opioid receptor, mu 1 JBrowse link 1 43,454,803 43,704,948 RGD:11554173
Herpes Simplex Encephalitis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Apoe apolipoprotein E JBrowse link 1 80,612,894 80,616,820 RGD:7771554
G Aqp4 aquaporin 4 JBrowse link 18 6,766,009 6,782,757 RGD:8698664
G Calca calcitonin-related polypeptide alpha JBrowse link 1 184,184,018 184,188,922 RGD:7240516
G Calcr calcitonin receptor JBrowse link 4 28,627,439 28,702,559 RGD:7240516
G Ccr2 C-C motif chemokine receptor 2 RGD:8661752
G Ccr5 C-C motif chemokine receptor 5 JBrowse link 8 133,192,398 133,215,599 RGD:8551839
G Cx3cr1 C-X3-C motif chemokine receptor 1 JBrowse link 8 128,740,756 128,754,514 RGD:8661752
G Gdnf glial cell derived neurotrophic factor JBrowse link 2 56,884,181 56,912,964 RGD:8657070
G Irf3 interferon regulatory factor 3 JBrowse link 1 100,992,244 100,997,202 RGD:11554173
G Lta lymphotoxin alpha JBrowse link 20 4,851,889 4,854,677 RGD:8548806
G Mmp2 matrix metallopeptidase 2 JBrowse link 19 15,542,771 15,570,589 RGD:8547868
G Mmp9 matrix metallopeptidase 9 JBrowse link 3 161,413,410 161,421,473 RGD:8547867
RGD:8547868
G Stat4 signal transducer and activator of transcription 4 JBrowse link 9 54,340,649 54,457,753 RGD:8661706
G Ticam1 toll-like receptor adaptor molecule 1 JBrowse link 9 10,780,185 10,790,280 RGD:11554173
G Tlr2 toll-like receptor 2 JBrowse link 2 182,840,171 182,846,061 RGD:8553026
RGD:5130178
G Tlr3 toll-like receptor 3 JBrowse link 16 50,016,466 50,031,011 RGD:8554872
RGD:11554173
RGD:7240710
G Tlr4 toll-like receptor 4 JBrowse link 5 82,587,424 82,601,056 RGD:5130178
G Tlr9 toll-like receptor 9 JBrowse link 8 114,916,122 114,920,171 RGD:5130178
G Traf3 Tnf receptor-associated factor 3 JBrowse link 6 135,610,698 135,720,247 RGD:11554173
G Unc93b1 unc-93 homolog B1, TLR signaling regulator JBrowse link 1 219,172,987 219,183,941 RGD:11554173
Herpes Simplex Encephalitis 1 term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tlr3 toll-like receptor 3 JBrowse link 16 50,016,466 50,031,011 RGD:8554872
G Unc93b1 unc-93 homolog B1, TLR signaling regulator JBrowse link 1 219,172,987 219,183,941 RGD:8554872
RGD:7240710
Herpes Simplex Encephalitis 3 term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Amn amnion associated transmembrane protein JBrowse link 6 135,724,455 135,731,896 RGD:8554872
G Traf3 Tnf receptor-associated factor 3 JBrowse link 6 135,610,698 135,720,247 RGD:8554872
RGD:7240710
Herpes Simplex Encephalitis 4 term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ticam1 toll-like receptor adaptor molecule 1 JBrowse link 9 10,780,185 10,790,280 RGD:8554872
RGD:7240710
Herpes Simplex Encephalitis 7 term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Irf3 interferon regulatory factor 3 JBrowse link 1 100,992,244 100,997,202 RGD:7240710
RGD:8554872
HIV Encephalitis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G App amyloid beta precursor protein JBrowse link 11 24,425,013 24,641,872 RGD:13782045
G Bace1 beta-secretase 1 JBrowse link 8 50,140,092 50,162,388 RGD:13782045
G Cdk5 cyclin-dependent kinase 5 JBrowse link 4 7,282,945 7,287,427 RGD:13506927
G Mfn1 mitofusin 1 JBrowse link 2 118,929,738 118,971,689 RGD:12910851
Japanese encephalitis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Camk2n1 calcium/calmodulin-dependent protein kinase II inhibitor 1 JBrowse link 5 156,876,706 156,878,486 RGD:18337278
Nasu-Hakola disease term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Trem2 triggering receptor expressed on myeloid cells 2 JBrowse link 9 14,611,541 14,618,076 RGD:8554872
G Tyrobp transmembrane immune signaling adaptor Tyrobp JBrowse link 1 88,875,370 88,879,305 RGD:7240710
RGD:8554872
tick-borne encephalitis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cd40 CD40 molecule JBrowse link 3 161,519,789 161,534,943 RGD:11352252
G Cd40lg CD40 ligand JBrowse link X 159,703,703 159,714,886 RGD:11352252
West Nile fever term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ccr5 C-C motif chemokine receptor 5 JBrowse link 8 133,192,398 133,215,599 RGD:7240710
RGD:8554872
RGD:11554173
G S100b S100 calcium binding protein B JBrowse link 20 13,130,633 13,142,856 RGD:5508797

Term paths to the root
Path 1
Term Annotations click to browse term
  disease 15489
    disease by infectious agent 830
      viral infectious disease 513
        Central Nervous System Viral Diseases 59
          viral encephalitis 48
            Arbovirus Encephalitis + 5
            Equine Encephalomyelitis + 0
            HIV Encephalitis 4
            Herpes Simplex Encephalitis + 32
            Human Herpesvirus 6 Encephalitis 0
            Murray Valley encephalitis 0
            Nipah virus encephalitis 0
            Varicella Zoster Encephalitis 0
            progressive multifocal leukoencephalopathy 0
            subacute sclerosing panencephalitis + 2
Path 2
Term Annotations click to browse term
  disease 15489
    disease of anatomical entity 14790
      nervous system disease 10147
        central nervous system disease 8254
          brain disease 7600
            encephalitis 67
              Infectious Encephalitis 48
                viral encephalitis 48
                  Arbovirus Encephalitis + 5
                  Equine Encephalomyelitis + 0
                  HIV Encephalitis 4
                  Herpes Simplex Encephalitis + 32
                  Human Herpesvirus 6 Encephalitis 0
                  Murray Valley encephalitis 0
                  Nipah virus encephalitis 0
                  Varicella Zoster Encephalitis 0
                  progressive multifocal leukoencephalopathy 0
                  subacute sclerosing panencephalitis + 2
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.