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ONTOLOGY REPORT - ANNOTATIONS
Term:pneumonia
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Accession:DOID:552 term browser browse the term
Definition:Infection of the lung often accompanied by inflammation.
Synonyms:exact_synonym: Experimental Lung Inflammation;   Experimental Lung Inflammations;   Lobar Pneumonia;   Lobar Pneumonias;   Lung Inflammation;   Lung Inflammations;   Pneumonias;   Pneumonitides;   Pneumonitis;   Pulmonary Inflammation;   Pulmonary Inflammations;   acute pneumonia
 primary_id: MESH:D011014
 alt_id: RDO:0001311
 xref: NCI:C3333
For additional species annotation, visit the Alliance of Genome Resources.

show annotations for term's descendants       view all columns           Sort by:
 
pneumonia term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abcf1 ATP binding cassette subfamily F member 1 JBrowse link 20 3,309,914 3,322,828 RGD:11554173
G Ace angiotensin I converting enzyme JBrowse link 10 94,170,766 94,213,831 RGD:4140922
RGD:4140918
RGD:4140916
G Adora1 adenosine A1 receptor JBrowse link 13 51,042,111 51,076,913 RGD:5129098
G Adora2a adenosine A2a receptor JBrowse link 20 14,265,251 14,282,873 RGD:4890364
RGD:4890376
RGD:4890358
G Adrb2 adrenoceptor beta 2 JBrowse link 18 57,513,792 57,515,834 RGD:4145041
G Agt angiotensinogen JBrowse link 19 57,321,594 57,333,460 RGD:11554173
G Ahr aryl hydrocarbon receptor JBrowse link 6 54,963,990 55,001,806 RGD:11554173
G Alb albumin JBrowse link 14 19,176,275 19,191,793 RGD:11035283
G Bdkrb2 bradykinin receptor B2 JBrowse link 6 129,399,468 129,429,676 RGD:4891030
G C3 complement C3 JBrowse link 9 9,721,137 9,747,084 RGD:5129562
G C3ar1 complement C3a receptor 1 JBrowse link 4 155,681,767 155,691,240 RGD:5129688
G C5 complement C5 JBrowse link 3
3		 14,049,993
14,206,466		 14,113,931
14,229,141		 RGD:5129688
RGD:5130161
G Casp1 caspase 1 JBrowse link 8 2,605,743 2,614,637 RGD:11554173
G Ccl11 C-C motif chemokine ligand 11 JBrowse link 10 69,434,965 69,439,566 RGD:4145450
RGD:11554173
RGD:4145445
G Ccl12 chemokine (C-C motif) ligand 12 JBrowse link 10 69,476,866 69,478,416 RGD:11554173
G Ccl17 C-C motif chemokine ligand 17 JBrowse link 19 10,619,220 10,620,671 RGD:2306304
RGD:11554173
G Ccl19 C-C motif chemokine ligand 19 JBrowse link 5 58,181,025 58,182,969 RGD:11554173
G Ccl2 C-C motif chemokine ligand 2 JBrowse link 10 69,412,065 69,413,863 RGD:4891461
RGD:11554173
G Ccl20 C-C motif chemokine ligand 20 JBrowse link 9 88,918,359 88,921,017 RGD:11554173
G Ccl22 C-C motif chemokine ligand 22 JBrowse link 19 10,674,189 10,681,145 RGD:2306304
G Ccl24 C-C motif chemokine ligand 24 JBrowse link 12 24,131,529 24,152,626 RGD:11554173
G Ccl4 C-C motif chemokine ligand 4 JBrowse link 10 70,870,926 70,886,357 RGD:11554173
G Ccl7 C-C motif chemokine ligand 7 JBrowse link 10 69,423,083 69,424,933 RGD:5130985
RGD:11554173
G Ccr1 C-C motif chemokine receptor 1 JBrowse link 8 132,996,646 133,002,201 RGD:5688175
RGD:11554173
G Ccr2 C-C motif chemokine receptor 2 RGD:4145068
RGD:11554173
RGD:8661704
G Ccr3 C-C motif chemokine receptor 3 JBrowse link 8 133,026,539 133,040,999 RGD:4145622
G Ccr5 C-C motif chemokine receptor 5 JBrowse link 8 133,192,398 133,215,599 RGD:4892103
G Ccr6 C-C motif chemokine receptor 6 JBrowse link 1 53,063,380 53,087,519 RGD:11554173
G Ccr7 C-C motif chemokine receptor 7 JBrowse link 10 87,057,335 87,067,444 RGD:5130919
G Ccr9 C-C motif chemokine receptor 9 JBrowse link 8 132,827,325 132,842,130 RGD:11554173
G Cd14 CD14 molecule JBrowse link 18 29,560,341 29,562,290 RGD:4144794
G Cd40lg CD40 ligand JBrowse link X 159,703,703 159,714,886 RGD:11554173
G Crhr2 corticotropin releasing hormone receptor 2 JBrowse link 4 85,286,371 85,329,374 RGD:5130933
G Crp C-reactive protein JBrowse link 13 91,080,448 91,081,358 RGD:5131283
RGD:5131291
G Csf2 colony stimulating factor 2 JBrowse link 10 39,602,089 39,604,070 RGD:4142837
RGD:11554173
G Csk C-terminal Src kinase JBrowse link 8 62,405,714 62,424,707 RGD:5134363
G Cx3cl1 C-X3-C motif chemokine ligand 1 JBrowse link 19 10,644,267 10,654,861 RGD:11554173
G Cxcl1 C-X-C motif chemokine ligand 1 JBrowse link 14 18,743,678 18,745,457 RGD:5134959
RGD:11554173
G Cxcl10 C-X-C motif chemokine ligand 10 JBrowse link 14 17,210,733 17,212,930 RGD:5135445
RGD:5135491
G Cxcl2 C-X-C motif chemokine ligand 2 JBrowse link 14 18,731,346 18,733,391 RGD:5134959
RGD:5135235
G Cxcl3 chemokine (C-X-C motif) ligand 3 JBrowse link 14 18,820,168 18,839,659 RGD:11554173
G Cxcl6 C-X-C motif chemokine ligand 6 JBrowse link 14 18,860,201 18,920,839 RGD:5135259
G Cxcl9 C-X-C motif chemokine ligand 9 JBrowse link 14 17,228,832 17,233,743 RGD:5135440
RGD:11554173
RGD:5135445
G Cxcr2 C-X-C motif chemokine receptor 2 JBrowse link 9 81,427,275 81,435,065 RGD:11554173
G Cxcr3 C-X-C motif chemokine receptor 3 JBrowse link X 71,614,346 71,616,997 RGD:5135445
RGD:11554173
RGD:5135491
G Cyp1a1 cytochrome P450, family 1, subfamily a, polypeptide 1 JBrowse link 8 62,472,087 62,478,122 RGD:4142512
G Cyp2e1 cytochrome P450, family 2, subfamily e, polypeptide 1 JBrowse link 1 213,511,892 213,522,195 RGD:4892223
RGD:4142512
G Defb1 defensin beta 1 JBrowse link 16 75,294,385 75,309,127 RGD:4892262
G Des desmin JBrowse link 9 82,556,574 82,564,288 RGD:8554872
G Edn1 endothelin 1 JBrowse link 17 22,136,814 22,143,745 RGD:4144879
G Egf epidermal growth factor JBrowse link 2 68,820,616 68,895,537 RGD:6906904
G Egr1 early growth response 1 JBrowse link 18 27,657,903 27,660,101 RGD:11554173
G Fcgr3a Fc fragment of IgG receptor IIIa JBrowse link 13 89,385,775 89,396,047 RGD:11352258
G Hdc histidine decarboxylase JBrowse link 3 119,057,524 119,075,599 RGD:5143922
G Hmox1 heme oxygenase 1 JBrowse link 19 14,508,634 14,515,455 RGD:1601608
RGD:11554173
G Icam1 intercellular adhesion molecule 1 JBrowse link 8 22,035,287 22,047,049 RGD:8547727
G Ifnar1 interferon alpha and beta receptor subunit 1 JBrowse link 11 31,640,407 31,666,839 RGD:5490275
G Ifng interferon gamma JBrowse link 7 61,337,383 61,341,419 RGD:11554173
G Ikbkb inhibitor of nuclear factor kappa B kinase subunit beta JBrowse link 16 74,177,233 74,230,809 RGD:7495767
RGD:11554173
G Il10 interleukin 10 JBrowse link 13 47,738,933 47,743,392 RGD:4140400
G Il13 interleukin 13 JBrowse link 10 38,982,909 38,985,466 RGD:4145774
RGD:11554173
G Il13ra2 interleukin 13 receptor subunit alpha 2 JBrowse link X 118,443,955 118,514,716 RGD:4890021
G Il17a interleukin 17A JBrowse link 9 26,841,299 26,844,786 RGD:4888524
RGD:11554173
RGD:9068417
G Il18 interleukin 18 JBrowse link 8 55,009,666 55,016,286 RGD:4889836
RGD:11554173
RGD:4889825
RGD:729357
RGD:4889590
G Il1a interleukin 1 alpha JBrowse link 3 121,824,712 121,836,122 RGD:7794765
G Il1b interleukin 1 beta JBrowse link 3 121,876,256 121,882,637 RGD:4142812
RGD:11554173
RGD:4142536
RGD:4143211
RGD:4142831
RGD:4142827
G Il1r1 interleukin 1 receptor type 1 JBrowse link 9 46,962,291 47,038,139 RGD:11554173
G Il1r2 interleukin 1 receptor type 2 JBrowse link 9 46,840,646 46,881,241 RGD:11554173
G Il1rn interleukin 1 receptor antagonist JBrowse link 3 1,449,778 1,468,624 RGD:4142871
RGD:8551846
RGD:4143213
RGD:4143204
RGD:4142865
G Il27 interleukin 27 JBrowse link 1 198,003,615 198,010,112 RGD:5128483
G Il2rb interleukin 2 receptor subunit beta JBrowse link 7 119,701,338 119,716,238 RGD:11554173
G Il33 interleukin 33 JBrowse link 1 248,112,611 248,147,030 RGD:11554173
G Il4 interleukin 4 JBrowse link 10 38,963,979 38,969,531 RGD:11554173
G Il5ra interleukin 5 receptor subunit alpha JBrowse link 4 138,796,165 138,834,164 RGD:11554173
G Il6 interleukin 6 JBrowse link 4 3,043,231 3,047,807 RGD:4140400
RGD:11554173
G Il6st interleukin 6 signal transducer JBrowse link 2 44,279,199 44,319,427 RGD:11554173
G Itga2 integrin subunit alpha 2 JBrowse link 2 46,996,904 47,097,011 RGD:8693217
G Itga4 integrin subunit alpha 4 JBrowse link 3 66,178,745 66,265,547 RGD:9698424
G Itgb2 integrin subunit beta 2 JBrowse link 20 11,777,773 11,815,647 RGD:6482228
RGD:11554173
G Itgb3 integrin subunit beta 3 JBrowse link 10 92,667,869 92,783,413 RGD:5100478
G Mbl2 mannose binding lectin 2 JBrowse link 1 248,435,069 248,442,669 RGD:4889459
RGD:8693755
G Mif macrophage migration inhibitory factor JBrowse link 20 13,715,219 13,732,980 RGD:4891058
G Mmp9 matrix metallopeptidase 9 JBrowse link 3 161,413,410 161,421,473 RGD:5130157
G Muc1 mucin 1, cell surface associated JBrowse link 2 188,543,137 188,547,874 RGD:5131281
G Muc2 mucin 2, oligomeric mucus/gel-forming JBrowse link 1 214,663,929 214,693,197 RGD:7349359
G Myd88 MYD88, innate immune signal transduction adaptor JBrowse link 8 128,022,512 128,027,462 RGD:11554173
G Mylk myosin light chain kinase JBrowse link 11 69,013,060 69,260,039 RGD:11554173
G Parp1 poly (ADP-ribose) polymerase 1 JBrowse link 13 98,857,255 98,889,444 RGD:11554173
G Pf4 platelet factor 4 JBrowse link 14 18,848,549 18,849,258 RGD:11554173
G Pomc proopiomelanocortin JBrowse link 6 28,382,937 28,388,771 RGD:11554173
G Reg3b regenerating family member 3 beta JBrowse link 4 109,467,272 109,470,510 RGD:9831426
G Serpine1 serpin family E member 1 JBrowse link 12 22,641,104 22,651,482 RGD:4143511
RGD:4143525
G Sftpa1 surfactant protein A1 JBrowse link 16 18,716,019 18,719,404 RGD:4143394
RGD:4143452
G Sftpb surfactant protein B JBrowse link 4 100,166,855 100,175,941 RGD:4143412
RGD:4143393
RGD:4143394
G Sftpc surfactant protein C JBrowse link 15 52,211,538 52,214,480 RGD:4143394
G Sftpd surfactant protein D JBrowse link 16 18,753,535 18,766,100 RGD:4143517
RGD:4143504
RGD:4143394
G Sirt1 sirtuin 1 JBrowse link 20 26,831,971 26,851,587 RGD:11554173
G Slc11a2 solute carrier family 11 member 2 JBrowse link 7 142,025,812 142,062,892 RGD:5688709
G Sod3 superoxide dismutase 3 JBrowse link 14 60,958,583 60,971,143 RGD:1581268
G Spp1 secreted phosphoprotein 1 JBrowse link 14 6,673,686 6,679,965 RGD:11554173
G Tgfb1 transforming growth factor, beta 1 JBrowse link 1 82,480,875 82,497,196 RGD:4145141
RGD:11554173
RGD:4145120
G Tlr2 toll-like receptor 2 JBrowse link 2 182,840,171 182,846,061 RGD:4145330
G Tlr4 toll-like receptor 4 JBrowse link 5 82,587,424 82,601,056 RGD:4142858
RGD:11554173
G Tnc tenascin C JBrowse link 5 79,789,686 79,874,555 RGD:4889573
G Tnf tumor necrosis factor JBrowse link 20 5,189,382 5,192,000 RGD:11554173
G Tnfrsf1a TNF receptor superfamily member 1A JBrowse link 4 157,864,905 157,877,634 RGD:11554173
G Tnfrsf1b TNF receptor superfamily member 1B JBrowse link 5 163,136,390 163,167,299 RGD:5131448
RGD:11554173
RGD:5131286
G Ttr transthyretin JBrowse link 18 15,532,963 15,542,180 RGD:8554872
G Vdr vitamin D receptor JBrowse link 7 139,344,452 139,394,138 RGD:4889851
RGD:11074745
aspiration pneumonia term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ace angiotensin I converting enzyme JBrowse link 10 94,170,766 94,213,831 RGD:4140926
G Cxcl1 C-X-C motif chemokine ligand 1 JBrowse link 14 18,743,678 18,745,457 RGD:4891456
G Cxcl2 C-X-C motif chemokine ligand 2 JBrowse link 14 18,731,346 18,733,391 RGD:4891456
G Edn1 endothelin 1 JBrowse link 17 22,136,814 22,143,745 RGD:4145069
G Il1a interleukin 1 alpha JBrowse link 3 121,824,712 121,836,122 RGD:4142854
G Nos2 nitric oxide synthase 2 JBrowse link 10 66,188,290 66,221,621 RGD:11554173
G Tnf tumor necrosis factor JBrowse link 20 5,189,382 5,192,000 RGD:4142854
bacterial pneumonia term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abcc1 ATP binding cassette subfamily C member 1 JBrowse link 10 549,537 672,235 RGD:5128828
G Ager advanced glycosylation end product-specific receptor JBrowse link 20 4,363,152 4,366,079 RGD:6767559
G C3 complement C3 JBrowse link 9 9,721,137 9,747,084 RGD:5129508
G C3ar1 complement C3a receptor 1 JBrowse link 4 155,681,767 155,691,240 RGD:5129690
G C5 complement C5 JBrowse link 3
3		 14,049,993
14,206,466		 14,113,931
14,229,141		 RGD:5129707
G Cat catalase JBrowse link 3 93,379,872 93,412,058 RGD:5130748
G Ccl19 C-C motif chemokine ligand 19 JBrowse link 5 58,181,025 58,182,969 RGD:5130918
G Ccl2 C-C motif chemokine ligand 2 JBrowse link 10 69,412,065 69,413,863 RGD:4891443
G Ccl4 C-C motif chemokine ligand 4 JBrowse link 10 70,870,926 70,886,357 RGD:5130905
G Ccr2 C-C motif chemokine receptor 2 RGD:4891443
G Ccr7 C-C motif chemokine receptor 7 JBrowse link 10 87,057,335 87,067,444 RGD:5130918
G Cd14 CD14 molecule JBrowse link 18 29,560,341 29,562,290 RGD:4144197
G Cd40 CD40 molecule JBrowse link 3 161,519,789 161,534,943 RGD:5132268
G Cd80 Cd80 molecule JBrowse link 11 64,815,201 64,855,293 RGD:4892562
G Chuk component of inhibitor of nuclear factor kappa B kinase complex JBrowse link 1 263,848,829 263,884,354 RGD:5133701
G Csf3 colony stimulating factor 3 JBrowse link 10 86,616,785 86,619,160 RGD:5133733
RGD:11039437
G Csf3r colony stimulating factor 3 receptor JBrowse link 5 144,031,353 144,051,966 RGD:5133739
G Cxcl1 C-X-C motif chemokine ligand 1 JBrowse link 14 18,743,678 18,745,457 RGD:5135062
RGD:5135234
G Cxcl10 C-X-C motif chemokine ligand 10 JBrowse link 14 17,210,733 17,212,930 RGD:5135458
RGD:5135459
G Cxcl11 C-X-C motif chemokine ligand 11 JBrowse link 14 17,195,395 17,198,170 RGD:5135459
G Cxcl2 C-X-C motif chemokine ligand 2 JBrowse link 14 18,731,346 18,733,391 RGD:5135065
RGD:5135234
RGD:5135062
G Cxcl3 chemokine (C-X-C motif) ligand 3 JBrowse link 14 18,820,168 18,839,659 RGD:5135234
G Cxcl6 C-X-C motif chemokine ligand 6 JBrowse link 14 18,860,201 18,920,839 RGD:4145490
G Cxcl9 C-X-C motif chemokine ligand 9 JBrowse link 14 17,228,832 17,233,743 RGD:5135459
G Cxcr3 C-X-C motif chemokine receptor 3 JBrowse link X 71,614,346 71,616,997 RGD:5135459
G Cyp2j4 cytochrome P450, family 2, subfamily j, polypeptide 4 JBrowse link 5 119,546,458 119,564,843 RGD:1625385
G Defb4 defensin beta 4 JBrowse link 16 75,634,598 75,637,789 RGD:4892266
G F2 coagulation factor II JBrowse link 3 80,529,468 80,542,993 RGD:6893486
G Fcgr2a Fc fragment of IgG receptor IIa JBrowse link 13 91,146,878 91,163,691 RGD:5129707
G Icam1 intercellular adhesion molecule 1 JBrowse link 8 22,035,287 22,047,049 RGD:4145490
G Ifnar1 interferon alpha and beta receptor subunit 1 JBrowse link 11 31,640,407 31,666,839 RGD:5490274
G Il15 interleukin 15 JBrowse link 19 23,542,606 23,624,366 RGD:5000754
G Il17a interleukin 17A JBrowse link 9 26,841,299 26,844,786 RGD:4889153
G Il18 interleukin 18 JBrowse link 8 55,009,666 55,016,286 RGD:4889913
G Il1b interleukin 1 beta JBrowse link 3 121,876,256 121,882,637 RGD:4143205
RGD:10755357
G Il1rl1 interleukin 1 receptor-like 1 JBrowse link 9 47,133,483 47,184,316 RGD:5144223
G Il1rn interleukin 1 receptor antagonist JBrowse link 3 1,449,778 1,468,624 RGD:4143205
RGD:4143206
G Il22 interleukin 22 JBrowse link 7 61,236,037 61,240,502 RGD:5147404
G Irf1 interferon regulatory factor 1 JBrowse link 10 39,109,530 39,116,532 RGD:5128725
G Irf3 interferon regulatory factor 3 JBrowse link 1 100,992,244 100,997,202 RGD:4891951
G Itgb3 integrin subunit beta 3 JBrowse link 10 92,667,869 92,783,413 RGD:4993468
G Lep leptin JBrowse link 4 56,337,695 56,351,818 RGD:5128871
G Mbl2 mannose binding lectin 2 JBrowse link 1 248,435,069 248,442,669 RGD:4889477
G Mc1r melanocortin 1 receptor JBrowse link 19 56,215,420 56,219,987 RGD:5687324
G Mmp9 matrix metallopeptidase 9 JBrowse link 3 161,413,410 161,421,473 RGD:5130727
RGD:5129533
G Mpo myeloperoxidase JBrowse link 10 75,087,892 75,098,260 RGD:5130992
G Nod1 nucleotide-binding oligomerization domain containing 1 JBrowse link 4 85,123,965 85,175,206 RGD:5131449
G Nod2 nucleotide-binding oligomerization domain containing 2 JBrowse link 19 19,342,061 19,389,366 RGD:5131449
G Pdpn podoplanin JBrowse link 5 161,947,137 161,981,441 RGD:2292375
G Pecam1 platelet and endothelial cell adhesion molecule 1 JBrowse link 10 94,850,971 94,913,202 RGD:724645
G Pgf placental growth factor JBrowse link 6 108,994,016 109,004,598 RGD:6483601
G Serpine1 serpin family E member 1 JBrowse link 12 22,641,104 22,651,482 RGD:4144840
G Sftpa1 surfactant protein A1 JBrowse link 16 18,716,019 18,719,404 RGD:4143464
G Sftpb surfactant protein B JBrowse link 4 100,166,855 100,175,941 RGD:4143403
RGD:4143464
G Sftpc surfactant protein C JBrowse link 15 52,211,538 52,214,480 RGD:4144114
RGD:4143464
G Sftpd surfactant protein D JBrowse link 16 18,753,535 18,766,100 RGD:4143403
RGD:4143464
G Stat3 signal transducer and activator of transcription 3 JBrowse link 10 88,790,401 88,842,263 RGD:6892945
G Tlr2 toll-like receptor 2 JBrowse link 2 182,840,171 182,846,061 RGD:4145337
RGD:4889533
G Tlr4 toll-like receptor 4 JBrowse link 5 82,587,424 82,601,056 RGD:4144172
RGD:4144197
G Tlr5 toll-like receptor 5 JBrowse link 13 101,364,784 101,385,764 RGD:5129503
G Tlr6 toll-like receptor 6 JBrowse link 14 45,024,351 45,041,188 RGD:4889533
G Tlr9 toll-like receptor 9 JBrowse link 8 114,916,122 114,920,171 RGD:5130719
G Tnf tumor necrosis factor JBrowse link 20 5,189,382 5,192,000 RGD:4143476
RGD:10755357
RGD:10450564
RGD:10449451
G Tnfrsf1a TNF receptor superfamily member 1A JBrowse link 4 157,864,905 157,877,634 RGD:5131429
G Tnfrsf1b TNF receptor superfamily member 1B JBrowse link 5 163,136,390 163,167,299 RGD:5131429
bronchopneumonia term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ccl5 C-C motif chemokine ligand 5 JBrowse link 10 70,739,764 70,744,303 RGD:4892019
G Cxcr2 C-X-C motif chemokine receptor 2 JBrowse link 9 81,427,275 81,435,065 RGD:5134954
G Mbl2 mannose binding lectin 2 JBrowse link 1 248,435,069 248,442,669 RGD:4889483
cryptogenic organizing pneumonia term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tnfrsf1a TNF receptor superfamily member 1A JBrowse link 4 157,864,905 157,877,634 RGD:5131112
G Tnfrsf1b TNF receptor superfamily member 1B JBrowse link 5 163,136,390 163,167,299 RGD:5131112
desquamative interstitial pneumonia term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sftpc surfactant protein C JBrowse link 15 52,211,538 52,214,480 RGD:13592920
idiopathic interstitial pneumonia term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cxcl6 C-X-C motif chemokine ligand 6 JBrowse link 14 18,860,201 18,920,839 RGD:5135258
RGD:5135260
G Icam1 intercellular adhesion molecule 1 JBrowse link 8 22,035,287 22,047,049 RGD:4145518
G Il6 interleukin 6 JBrowse link 4 3,043,231 3,047,807 RGD:11062092
G Keap1 Kelch-like ECH-associated protein 1 JBrowse link 8 22,250,518 22,259,868 RGD:6893300
G Mtor mechanistic target of rapamycin kinase JBrowse link 5 165,263,813 165,373,967 RGD:7245946
G Scgb1a1 secretoglobin family 1A member 1 JBrowse link 1 225,279,698 225,283,246 RGD:5144148
idiopathic pulmonary fibrosis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abca3 ATP binding cassette subfamily A member 3 JBrowse link 10 13,723,365 13,780,558 RGD:8554872
G Apoa1 apolipoprotein A1 JBrowse link 8 50,525,091 50,526,875 RGD:5508222
G Atp11a ATPase phospholipid transporting 11A JBrowse link 16 81,990,340 82,100,222 RGD:11554173
G Bmp1 bone morphogenetic protein 1 JBrowse link 15 52,166,401 52,210,786 RGD:8554872
G Brd4 bromodomain containing 4 JBrowse link 7 14,222,101 14,303,055 RGD:9586353
G Ccl12 chemokine (C-C motif) ligand 12 JBrowse link 10 69,476,866 69,478,416 RGD:11554173
G Cflar CASP8 and FADD-like apoptosis regulator JBrowse link 9 65,534,608 65,586,395 RGD:11341695
G Ctc1 CST telomere replication complex component 1 JBrowse link 10 55,596,172 55,616,873 RGD:8554872
G Cxcl6 C-X-C motif chemokine ligand 6 JBrowse link 14 18,860,201 18,920,839 RGD:5135241
RGD:5135250
G Dpp9 dipeptidyl peptidase 9 JBrowse link 9 10,846,493 10,882,560 RGD:11554173
G Dsp desmoplakin JBrowse link 17 27,286,811 27,334,453 RGD:11554173
G Dtnbp1 dystrobrevin binding protein 1 JBrowse link 17 20,090,136 20,182,332 RGD:8554872
G Ehmt2 euchromatic histone lysine methyltransferase 2 JBrowse link 20 4,576,033 4,592,980 RGD:9589169
G Esr1 estrogen receptor 1 JBrowse link 1 41,192,029 41,594,799 RGD:11554173
G F3 coagulation factor III, tissue factor JBrowse link 2 225,310,686 225,322,281 RGD:11060143
G Fam13a family with sequence similarity 13, member A JBrowse link 4 89,183,180 89,281,282 RGD:11554173
G Fas Fas cell surface death receptor JBrowse link 1 252,589,785 252,624,790 RGD:11049166
G Faslg Fas ligand JBrowse link 13 79,696,811 79,717,581 RGD:11049166
G Fosl2 FOS like 2, AP-1 transcription factor subunit JBrowse link 6 25,598,936 25,616,995 RGD:13592920
G Gper1 G protein-coupled estrogen receptor 1 JBrowse link 12 17,309,122 17,315,267 RGD:11554173
G Hif1a hypoxia inducible factor 1 subunit alpha JBrowse link 6 96,810,868 96,856,303 RGD:11554173
G Hps4 HPS4, biogenesis of lysosomal organelles complex 3 subunit 2 JBrowse link 12 50,285,239 50,315,893 RGD:8554872
G Il1rl1 interleukin 1 receptor-like 1 JBrowse link 9 47,133,483 47,184,316 RGD:5144236
G Il1rn interleukin 1 receptor antagonist JBrowse link 3 1,449,778 1,468,624 RGD:8554872
G Il2ra interleukin 2 receptor subunit alpha JBrowse link 17 70,500,672 70,547,929 RGD:5147438
G Lama3 laminin subunit alpha 3 JBrowse link 18 3,704,866 3,941,215 RGD:8554872
G Mmp1 matrix metallopeptidase 1 JBrowse link 8 5,703,206 5,723,593 RGD:4890373
RGD:8554872
G Mmp19 matrix metallopeptidase 19 JBrowse link 7 3,216,392 3,224,202 RGD:8554872
G Mmp3 matrix metallopeptidase 3 JBrowse link 8 5,676,608 5,698,579 RGD:8694097
RGD:11554173
G Muc1 mucin 1, cell surface associated JBrowse link 2 188,543,137 188,547,874 RGD:7244290
G Muc5b mucin 5B, oligomeric mucus/gel-forming JBrowse link 1 214,778,459 214,811,237 RGD:7240710
RGD:8554872
RGD:11554173
G Ntrk2 neurotrophic receptor tyrosine kinase 2 JBrowse link 17 5,934,651 6,245,778 RGD:5684550
G Parn poly(A)-specific ribonuclease JBrowse link 10 1,309,724 1,461,123 RGD:11554173
G Parp1 poly (ADP-ribose) polymerase 1 JBrowse link 13 98,857,255 98,889,444 RGD:10413908
G Plau plasminogen activator, urokinase JBrowse link 15 3,644,296 3,650,765 RGD:11554173
G Ptgs2 prostaglandin-endoperoxide synthase 2 JBrowse link 13 67,351,230 67,356,920 RGD:5135280
RGD:5135507
RGD:5135461
G RT1-Db1 RT1 class II, locus Db1 JBrowse link 20 4,087,621 4,097,190 RGD:5147566
G Rtel1 regulator of telomere elongation helicase 1 JBrowse link 3 176,818,012 176,856,531 RGD:8554872
RGD:11554173
G Rtkn2 rhotekin 2 JBrowse link 20 21,919,486 22,004,279 RGD:8554872
G Sftpa1 surfactant protein A1 JBrowse link 16 18,716,019 18,719,404 RGD:8554872
G Sftpc surfactant protein C JBrowse link 15 52,211,538 52,214,480 RGD:11554173
RGD:8554872
G Stat3 signal transducer and activator of transcription 3 JBrowse link 10 88,790,401 88,842,263 RGD:6892915
RGD:11554173
G Stn1 STN1 subunit of CST complex JBrowse link 1 267,281,786 267,315,714 RGD:11554173
G Terc telomerase RNA component JBrowse link 2 116,432,723 116,433,110 RGD:8554872
RGD:11554173
G Tert telomerase reverse transcriptase JBrowse link 1 32,250,876 32,275,330 RGD:8554872
RGD:11554173
RGD:11038666
G Tfpi tissue factor pathway inhibitor JBrowse link 3 71,852,738 71,902,127 RGD:11060143
G Thbd thrombomodulin JBrowse link 3 142,748,673 142,752,325 RGD:5685036
G Tnf tumor necrosis factor JBrowse link 20 5,189,382 5,192,000 RGD:13592920
G Wnt5a Wnt family member 5A JBrowse link 16 4,469,451 4,490,271 RGD:11554173
Mycoplasma pneumoniae pneumonia term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ada adenosine deaminase JBrowse link 3 160,115,840 160,139,947 RGD:5128857
G Ccl4 C-C motif chemokine ligand 4 JBrowse link 10 70,870,926 70,886,357 RGD:4892091
G Ccl5 C-C motif chemokine ligand 5 JBrowse link 10 70,739,764 70,744,303 RGD:4891914
G Ccr5 C-C motif chemokine receptor 5 JBrowse link 8 133,192,398 133,215,599 RGD:4892091
G Crp C-reactive protein JBrowse link 13 91,080,448 91,081,358 RGD:5131292
G Hdc histidine decarboxylase JBrowse link 3 119,057,524 119,075,599 RGD:5143920
G Ifng interferon gamma JBrowse link 7 61,337,383 61,341,419 RGD:10755754
G Il13 interleukin 13 JBrowse link 10 38,982,909 38,985,466 RGD:4145765
G Tnf tumor necrosis factor JBrowse link 20 5,189,382 5,192,000 RGD:4145765
pleuropneumonia term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Alox5 arachidonate 5-lipoxygenase JBrowse link 4 148,398,004 148,446,308 RGD:4890419
Pneumococcal Pneumonia term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Alox5 arachidonate 5-lipoxygenase JBrowse link 4 148,398,004 148,446,308 RGD:4890435
G C3 complement C3 JBrowse link 9 9,721,137 9,747,084 RGD:5130163
RGD:5129523
RGD:5129509
G C5 complement C5 JBrowse link 3
3		 14,049,993
14,206,466		 14,113,931
14,229,141		 RGD:5130159
G Ccl5 C-C motif chemokine ligand 5 JBrowse link 10 70,739,764 70,744,303 RGD:4892130
G Cd14 CD14 molecule JBrowse link 18 29,560,341 29,562,290 RGD:4144788
G Chi3l1 chitinase 3 like 1 JBrowse link 13 51,022,844 51,030,797 RGD:4892626
G Crhr1 corticotropin releasing hormone receptor 1 JBrowse link 10 92,191,473 92,233,662 RGD:5147472
G Crhr2 corticotropin releasing hormone receptor 2 JBrowse link 4 85,286,371 85,329,374 RGD:5147472
G Crp C-reactive protein JBrowse link 13 91,080,448 91,081,358 RGD:5131293
G Cxcl1 C-X-C motif chemokine ligand 1 JBrowse link 14 18,743,678 18,745,457 RGD:5134957
G Cxcl9 C-X-C motif chemokine ligand 9 JBrowse link 14 17,228,832 17,233,743 RGD:5135285
G Defb4 defensin beta 4 JBrowse link 16 75,634,598 75,637,789 RGD:11554173
G Hmox1 heme oxygenase 1 JBrowse link 19 14,508,634 14,515,455 RGD:4145366
G Hp haptoglobin JBrowse link 19 42,096,255 42,100,805 RGD:5147385
G Il15 interleukin 15 JBrowse link 19 23,542,606 23,624,366 RGD:5000755
G Il15ra interleukin 15 receptor subunit alpha JBrowse link 17 70,451,861 70,481,838 RGD:5000755
G Il17a interleukin 17A JBrowse link 9 26,841,299 26,844,786 RGD:4888531
G Il18 interleukin 18 JBrowse link 8 55,009,666 55,016,286 RGD:4889960
G Il6 interleukin 6 JBrowse link 4 3,043,231 3,047,807 RGD:4143255
G Lep leptin JBrowse link 4 56,337,695 56,351,818 RGD:5128869
G Lepr leptin receptor JBrowse link 5 120,503,475 120,682,281 RGD:5128846
G Mapk1 mitogen activated protein kinase 1 JBrowse link 11 88,203,863 88,273,301 RGD:11554173
G Mapk3 mitogen activated protein kinase 3 JBrowse link 1 198,192,773 198,198,975 RGD:11554173
G Masp2 mannan-binding lectin serine peptidase 2 JBrowse link 5 165,415,105 165,429,857 RGD:11554173
G Mbl2 mannose binding lectin 2 JBrowse link 1 248,435,069 248,442,669 RGD:4889477
RGD:4889478
G Nos2 nitric oxide synthase 2 JBrowse link 10 66,188,290 66,221,621 RGD:4891950
G Sftpd surfactant protein D JBrowse link 16 18,753,535 18,766,100 RGD:4143519
G Sirt1 sirtuin 1 JBrowse link 20 26,831,971 26,851,587 RGD:11554173
G Tlr2 toll-like receptor 2 JBrowse link 2 182,840,171 182,846,061 RGD:4145321
G Tnf tumor necrosis factor JBrowse link 20 5,189,382 5,192,000 RGD:4143479
RGD:4145366
pneumocystosis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Azin1 antizyme inhibitor 1 JBrowse link 7 77,345,646 77,372,398 RGD:14700806
G C3 complement C3 JBrowse link 9 9,721,137 9,747,084 RGD:5129525
G Ccl2 C-C motif chemokine ligand 2 JBrowse link 10 69,412,065 69,413,863 RGD:4891428
G Cd40 CD40 molecule JBrowse link 3 161,519,789 161,534,943 RGD:8547797
G Csf2 colony stimulating factor 2 JBrowse link 10 39,602,089 39,604,070 RGD:5131475
G Muc1 mucin 1, cell surface associated JBrowse link 2 188,543,137 188,547,874 RGD:5131424
G Nos2 nitric oxide synthase 2 JBrowse link 10 66,188,290 66,221,621 RGD:4144112
RGD:4891486
G RT1-Bb RT1 class II, locus Bb JBrowse link 20 4,043,726 4,049,367 RGD:4144112
G Sftpa1 surfactant protein A1 JBrowse link 16 18,716,019 18,719,404 RGD:4143431
G Sftpb surfactant protein B JBrowse link 4 100,166,855 100,175,941 RGD:4143431
G Sftpc surfactant protein C JBrowse link 15 52,211,538 52,214,480 RGD:4143431
G Sftpd surfactant protein D JBrowse link 16 18,753,535 18,766,100 RGD:4143431
G Tlr2 toll-like receptor 2 JBrowse link 2 182,840,171 182,846,061 RGD:4145341
Pneumonia, Staphylococcal term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cd86 CD86 molecule JBrowse link 11 67,060,305 67,117,990 RGD:4892562
G Csf3 colony stimulating factor 3 JBrowse link 10 86,616,785 86,619,160 RGD:11039478
G Fn1 fibronectin 1 JBrowse link 9 78,900,111 78,969,018 RGD:7205474
G Ifnar1 interferon alpha and beta receptor subunit 1 JBrowse link 11 31,640,407 31,666,839 RGD:5490273
G Il10 interleukin 10 JBrowse link 13 47,738,933 47,743,392 RGD:7364825
G Il15 interleukin 15 JBrowse link 19 23,542,606 23,624,366 RGD:4996474
G Il1b interleukin 1 beta JBrowse link 3 121,876,256 121,882,637 RGD:4142828
G Nod2 nucleotide-binding oligomerization domain containing 2 JBrowse link 19 19,342,061 19,389,366 RGD:5131444
G Prkn parkin RBR E3 ubiquitin protein ligase JBrowse link 1 48,880,015 50,069,998 RGD:13432209
Pneumonia, Ventilator-Associated term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gc GC, vitamin D binding protein JBrowse link 14 20,267,023 20,302,577 RGD:5509873
viral pneumonia term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ace angiotensin I converting enzyme JBrowse link 10 94,170,766 94,213,831 RGD:11554173
G Ccl11 C-C motif chemokine ligand 11 JBrowse link 10 69,434,965 69,439,566 RGD:4140459
G Ccl2 C-C motif chemokine ligand 2 JBrowse link 10 69,412,065 69,413,863 RGD:4891451
G Ccl4 C-C motif chemokine ligand 4 JBrowse link 10 70,870,926 70,886,357 RGD:5130904
G Ccr1 C-C motif chemokine receptor 1 JBrowse link 8 132,996,646 133,002,201 RGD:5688163
G Cxcl1 C-X-C motif chemokine ligand 1 JBrowse link 14 18,743,678 18,745,457 RGD:5134975
G Cxcl10 C-X-C motif chemokine ligand 10 JBrowse link 14 17,210,733 17,212,930 RGD:5135437
G Cxcl2 C-X-C motif chemokine ligand 2 JBrowse link 14 18,731,346 18,733,391 RGD:5134975
G Cxcl9 C-X-C motif chemokine ligand 9 JBrowse link 14 17,228,832 17,233,743 RGD:5135437
G Hmox1 heme oxygenase 1 JBrowse link 19 14,508,634 14,515,455 RGD:4145417
G Ifnar1 interferon alpha and beta receptor subunit 1 JBrowse link 11 31,640,407 31,666,839 RGD:5490272
G Il10 interleukin 10 JBrowse link 13 47,738,933 47,743,392 RGD:10450576
G Il15 interleukin 15 JBrowse link 19 23,542,606 23,624,366 RGD:4892670
G Mif macrophage migration inhibitory factor JBrowse link 20 13,715,219 13,732,980 RGD:4891005
G Tlr9 toll-like receptor 9 JBrowse link 8 114,916,122 114,920,171 RGD:5130766
G Tnf tumor necrosis factor JBrowse link 20 5,189,382 5,192,000 RGD:10450576
Term paths to the root
Path 1
Term Annotations click to browse term
  disease 15626
    disease of anatomical entity 14956
      Immune & Inflammatory Diseases 3100
        Inflammation 2040
          pneumonia 199
            Cholesterol Pneumonia 0
            Necrotizing Pneumonia 0
            Pneumonia, Ventilator-Associated 1
            aspiration pneumonia + 7
            aspiration pneumonitis + 0
            bacterial pneumonia + 93
            bronchopneumonia 3
            eosinophilic pneumonia + 0
            idiopathic interstitial pneumonia + 56
            pleuropneumonia 1
            pneumocystosis 13
            toxic pneumonitis 0
            viral pneumonia 16
Path 2
Term Annotations click to browse term
  disease 15626
    disease of anatomical entity 0
      respiratory system disease 2416
        lower respiratory tract disease 1436
          lung disease 1395
            pneumonia 199
              Cholesterol Pneumonia 0
              Necrotizing Pneumonia 0
              Pneumonia, Ventilator-Associated 1
              aspiration pneumonia + 7
              aspiration pneumonitis + 0
              bacterial pneumonia + 93
              bronchopneumonia 3
              eosinophilic pneumonia + 0
              idiopathic interstitial pneumonia + 56
              pleuropneumonia 1
              pneumocystosis 13
              toxic pneumonitis 0
              viral pneumonia 16
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.