RGD DISEASE ONTOLOGY - ANNOTATIONS
RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.
Term: pneumonia
Accession: DOID:552
browse the term
Definition: Infection of the lung often accompanied by inflammation.
Synonyms: exact_synonym: Experimental Lung Inflammation; Experimental Lung Inflammations; Lobar Pneumonia; Lobar Pneumonias; Lung Inflammation; Lung Inflammations; Pneumonias; Pneumonitides; Pneumonitis; Pulmonary Inflammation; Pulmonary Inflammations; acute pneumonia
primary_id: MESH:D011014
alt_id: RDO:0001311
xref: NCI:C3333
For additional species annotation, visit the
Alliance of Genome Resources .
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Abcf1
ATP binding cassette subfamily F member 1
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:21625544
NCBI chr20:3,309,914...3,322,828
Ensembl chr20:3,309,899...3,322,825
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Abo
ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase
severity
ISO
DNA:polymorphism:cds:allele A (human)
RGD
PMID:4375858
RGD:39938844
NCBI chr 3:4,374,679...4,394,374
Ensembl chr 3:4,374,602...4,394,428
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Ace
angiotensin I converting enzyme
disease_progression
ISO
associated with Hypertension
RGD
PMID:17727310 , PMID:19455553 , PMID:20051911
RGD:4140922 , RGD:4140918 , RGD:4140916
NCBI chr10:94,170,766...94,213,831
Ensembl chr10:94,170,766...94,187,822
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Adora1
adenosine A1 receptor
ISO
RGD
PMID:15630442
RGD:5129098
NCBI chr13:51,042,111...51,076,913
Ensembl chr13:51,042,248...51,076,852
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Adora2a
adenosine A2a receptor
ISO
associated with Lung Injury associated with Anemia, Sickle Cell
RGD
PMID:18703794 , PMID:17601796 , PMID:20798237
RGD:4890364 , RGD:4890376 , RGD:4890358
NCBI chr20:14,265,251...14,282,873
Ensembl chr20:14,265,252...14,282,873
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Adrb2
adrenoceptor beta 2
IDA
RGD
PMID:19925785
RGD:4145041
NCBI chr18:57,513,792...57,515,834
Ensembl chr18:57,513,793...57,515,834
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Agt
angiotensinogen
ISO
CTD Direct Evidence: therapeutic
CTD
PMID:28960804
NCBI chr19:57,321,594...57,333,460
Ensembl chr19:57,321,640...57,333,433
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Ahr
aryl hydrocarbon receptor
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:23337360
NCBI chr 6:54,963,990...55,001,806
Ensembl chr 6:54,963,990...55,001,464
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Alb
albumin
disease_progression
ISO
RGD
PMID:23286966
RGD:11035283
NCBI chr14:19,176,275...19,191,793
Ensembl chr14:19,176,277...19,191,863
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Bdkrb2
bradykinin receptor B2
ISO
RGD
PMID:15021973
RGD:4891030
NCBI chr 6:129,399,468...129,429,676
Ensembl chr 6:129,399,468...129,429,676
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C3
complement C3
IDA
RGD
PMID:10886251
RGD:5129562
NCBI chr 9:9,721,137...9,747,084
Ensembl chr 9:9,721,105...9,747,167
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C3ar1
complement C3a receptor 1
ISO
associated with Respiratory Syncytial Virus Infections
RGD
PMID:17079327
RGD:5129688
NCBI chr 4:155,681,767...155,691,240
Ensembl chr 4:155,684,029...155,690,869
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C5
complement C5
ISO
associated with Respiratory Syncytial Virus Infections
RGD
PMID:17079327 , PMID:3631740
RGD:5129688 , RGD:5130161
NCBI chr 3:14,049,993...14,113,931 NCBI chr 3:14,206,466...14,229,141
Ensembl chr 3:14,049,995...14,229,080
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Casp1
caspase 1
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:21625544
NCBI chr 8:2,605,743...2,614,637
Ensembl chr 8:2,604,962...2,614,631
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Ccl11
C-C motif chemokine ligand 11
IMP ISO IEP
CTD Direct Evidence: marker/mechanism mRNA, protein:increased expression:lung, respiratory system fluid/secretion
CTD
PMID:21625544 , PMID:10595930 , PMID:11290805
RGD:4145450 , RGD:4145445
NCBI chr10:69,434,965...69,439,566
Ensembl chr10:69,434,941...69,439,575
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Ccl12
chemokine (C-C motif) ligand 12
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:21625544
NCBI chr10:69,476,866...69,478,416
Ensembl chr10:69,476,775...69,478,462
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Ccl17
C-C motif chemokine ligand 17
IEP ISO
mRNA:increased expression:lung CTD Direct Evidence: marker/mechanism
CTD
PMID:21625544 , PMID:15993846
RGD:2306304
NCBI chr19:10,619,220...10,620,671
Ensembl chr19:10,619,220...10,620,671
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Ccl19
C-C motif chemokine ligand 19
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:21625544
NCBI chr 5:58,181,025...58,182,969
Ensembl chr 5:58,181,026...58,183,017
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Ccl2
C-C motif chemokine ligand 2
ISO
protein:increased expression:respiratory system fluid/secretion CTD Direct Evidence: marker/mechanism
CTD
PMID:21625544 , PMID:19648283
RGD:4891461
NCBI chr10:69,412,065...69,413,863
Ensembl chr10:69,412,017...69,413,870
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Ccl20
C-C motif chemokine ligand 20
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:21625544
NCBI chr 9:88,918,359...88,921,017
Ensembl chr 9:88,918,433...88,921,001
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Ccl22
C-C motif chemokine ligand 22
IEP
mRNA:increased expression:lung
RGD
PMID:15993846
RGD:2306304
NCBI chr19:10,674,189...10,681,145
Ensembl chr19:10,674,189...10,681,145
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Ccl24
C-C motif chemokine ligand 24
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:21625544
NCBI chr12:24,131,529...24,152,626
Ensembl chr12:24,148,567...24,152,625
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Ccl3
C-C motif chemokine ligand 3
ISO
mRNA:increased expression:bronchoalveolar lavage (human)
RGD
PMID:32407669
RGD:30296672
NCBI chr10:70,869,516...70,871,066
Ensembl chr10:70,869,513...70,871,066
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Ccl4
C-C motif chemokine ligand 4
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:21625544
NCBI chr10:70,870,926...70,886,357
Ensembl chr10:70,884,531...70,886,355
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Ccl7
C-C motif chemokine ligand 7
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:21625544 , PMID:15191918
RGD:5130985
NCBI chr10:69,423,083...69,424,933
Ensembl chr10:69,423,086...69,424,979
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Ccr1
C-C motif chemokine receptor 1
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:21625544 , PMID:20870892
RGD:5688175
NCBI chr 8:132,996,646...133,002,201
Ensembl chr 8:132,996,649...133,002,201
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Ccr2
C-C motif chemokine receptor 2
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:21625544 , PMID:14615370 , PMID:17284325
RGD:4145068 , RGD:8661704
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Ccr3
C-C motif chemokine receptor 3
ISO
mRNA:increased expression:lung
RGD
PMID:19762220
RGD:4145622
NCBI chr 8:133,026,539...133,040,999
Ensembl chr 8:133,029,625...133,040,997
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Ccr5
C-C motif chemokine receptor 5
ISO
Idiopathic Pneumonia Syndrome; mRNA:increased expression:lung (mouse)
RGD
PMID:15546955
RGD:4892103
NCBI chr 8:133,192,398...133,215,599
Ensembl chr 8:133,197,032...133,215,614
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Ccr6
C-C motif chemokine receptor 6
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:21625544
NCBI chr 1:53,063,380...53,087,519
Ensembl chr 1:53,065,025...53,087,474
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Ccr7
C-C motif chemokine receptor 7
ISO
mRNA, protein:increased expression:lung
RGD
PMID:16394278
RGD:5130919
NCBI chr10:87,057,335...87,067,444
Ensembl chr10:87,057,136...87,067,456
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Ccr9
C-C motif chemokine receptor 9
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:21625544
NCBI chr 8:132,827,325...132,842,130
Ensembl chr 8:132,828,091...132,842,130
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Cd14
CD14 molecule
ISO
protein:increased expression:multiple
RGD
PMID:20302606
RGD:4144794
NCBI chr18:29,560,341...29,562,290
Ensembl chr18:29,560,365...29,562,153
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Cd40lg
CD40 ligand
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:21625544
NCBI chr X:159,703,703...159,714,886
Ensembl chr X:159,703,578...159,716,562
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Crhr2
corticotropin releasing hormone receptor 2
ISO
RGD
PMID:16855006
RGD:5130933
NCBI chr 4:85,286,371...85,329,374
Ensembl chr 4:85,286,372...85,329,362
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Crp
C-reactive protein
severity disease_progression
ISO
RGD
PMID:21258955 , PMID:21439658
RGD:5131283 , RGD:5131291
NCBI chr13:91,080,448...91,081,358
Ensembl chr13:91,054,974...91,093,713
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Csf2
colony stimulating factor 2
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:11732872 , PMID:19633061
RGD:4142837
NCBI chr10:39,602,089...39,604,070
Ensembl chr10:39,602,089...39,604,070
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Csf3r
colony stimulating factor 3 receptor
ISO
mRNA:increased expression:bronchoalveolar lavage (human)
RGD
PMID:32407669
RGD:30296672
NCBI chr 5:144,031,353...144,051,966
Ensembl chr 5:144,031,402...144,051,600
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Csk
C-terminal Src kinase
ISO
RGD
PMID:14975240
RGD:5134363
NCBI chr 8:62,405,714...62,424,707
Ensembl chr 8:62,405,715...62,424,303
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Cx3cl1
C-X3-C motif chemokine ligand 1
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:21625544
NCBI chr19:10,644,267...10,654,861
Ensembl chr19:10,644,244...10,653,800
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Cxcl1
C-X-C motif chemokine ligand 1
IEP ISO
mRNA, protein:increased expression:lung CTD Direct Evidence: marker/mechanism
CTD
PMID:21625544 , PMID:20728373
RGD:5134959
NCBI chr14:18,743,678...18,745,457
Ensembl chr14:18,743,685...18,745,457
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Cxcl10
C-X-C motif chemokine ligand 10
ISO
associated with Lupus Erythematosus, Systemic;mRNA:increased expression:lung
RGD
PMID:15265940 , PMID:14979941
RGD:5135445 , RGD:5135491
NCBI chr14:17,210,733...17,212,930
Ensembl chr14:17,210,733...17,212,930
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Cxcl2
C-X-C motif chemokine ligand 2
IEP ISO
mRNA, protein:increased expression:lung mRNA:increased expression:lung
RGD
PMID:20728373 , PMID:18367723
RGD:5134959 , RGD:5135235
NCBI chr14:18,731,346...18,733,391
Ensembl chr14:18,731,378...18,733,391
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Cxcl3
C-X-C motif chemokine ligand 3
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:21625544
NCBI chr14:18,820,168...18,839,659
Ensembl chr14:18,820,168...18,839,595
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Cxcl6
C-X-C motif chemokine ligand 6
ISO
protein:increased expression:sputum
RGD
PMID:18410262
RGD:5135259
NCBI chr14:18,860,201...18,920,839
Ensembl chr14:18,860,264...18,862,407
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Cxcl9
C-X-C motif chemokine ligand 9
ISO
protein:increased expression:serum CTD Direct Evidence: marker/mechanism
CTD
PMID:21625544 , PMID:17052299 , PMID:15265940
RGD:5135440 , RGD:5135445
NCBI chr14:17,228,832...17,233,743
Ensembl chr14:17,228,856...17,234,712
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Cxcr2
C-X-C motif chemokine receptor 2
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:21625544
NCBI chr 9:81,427,275...81,435,065
Ensembl chr 9:81,427,730...81,434,102
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Cxcr3
C-X-C motif chemokine receptor 3
ISO
CTD Direct Evidence: marker/mechanism associated with Lupus Erythematosus, Systemic;mRNA:increased expression:lung
CTD
PMID:21625544 , PMID:15265940 , PMID:14979941
RGD:5135445 , RGD:5135491
NCBI chr X:71,614,346...71,616,997
Ensembl chr X:71,614,346...71,616,997
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Cyp1a1
cytochrome P450, family 1, subfamily a, polypeptide 1
susceptibility
ISO
DNA:polymorphism (human)
RGD
PMID:15928955
RGD:4142512
NCBI chr 8:62,472,087...62,478,122
Ensembl chr 8:62,472,095...62,478,147
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Cyp2e1
cytochrome P450, family 2, subfamily e, polypeptide 1
ISO
protein:increased expression:alveolus, epithelial cell DNA:polymorphism (human)
RGD
PMID:14698565 , PMID:15928955
RGD:4892223 , RGD:4142512
NCBI chr 1:213,511,892...213,522,195
Ensembl chr 1:213,511,874...213,535,542
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Defb1
defensin beta 1
ISO
protein:increased expression:serum
RGD
PMID:17000097
RGD:4892262
NCBI chr16:75,294,385...75,309,127
Ensembl chr16:75,294,376...75,309,176
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Des
desmin
ISO
ClinVar Annotator: match by term: pneumonitis
ClinVar
PMID:24033266 PMID:24503780 PMID:25741868 PMID:26265630 PMID:26724190 PMID:28341588 PMID:28492532
NCBI chr 9:82,556,574...82,564,288
Ensembl chr 9:82,556,573...82,564,294
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Edn1
endothelin 1
severity
ISO
protein:increased secretion:plasma (human)
RGD
PMID:20529344
RGD:4144879
NCBI chr17:22,136,814...22,143,745
Ensembl chr17:22,137,324...22,143,324
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Egf
epidermal growth factor
resistance
ISO
RGD
PMID:21701422
RGD:6906904
NCBI chr 2:68,820,616...68,895,537
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Egr1
early growth response 1
ISO
CTD Direct Evidence: therapeutic
CTD
PMID:29787794
NCBI chr18:27,657,903...27,660,101
Ensembl chr18:27,657,628...27,661,429
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Fcgr3a
Fc fragment of IgG receptor IIIa
treatment
ISO
associated with Hodgkin Disease;DNA:SNP:exon:p.F158V (rs396991) (human)
RGD
PMID:20423913
RGD:11352258
NCBI chr13:89,385,775...89,396,047
Ensembl chr13:89,385,859...89,396,051
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Hdc
histidine decarboxylase
ISO
RGD
PMID:14556983
RGD:5143922
NCBI chr 3:119,057,524...119,075,599
Ensembl chr 3:119,057,517...119,075,619
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Hmox1
heme oxygenase 1
susceptibility
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:16582079 , PMID:16582079
RGD:1601608
NCBI chr19:14,508,634...14,515,455
Ensembl chr19:14,508,616...14,515,456
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Icam1
intercellular adhesion molecule 1
treatment
IEP
associated with Reperfusion Injury
RGD
PMID:22882462
RGD:8547727
NCBI chr 8:22,035,287...22,047,049
Ensembl chr 8:22,035,256...22,047,059
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Ifnar1
interferon alpha and beta receptor subunit 1
resistance
ISO
Cryptococcus (yeast) pneumonia
RGD
PMID:18566423 , PMID:18566423
RGD:5490275 , RGD:5490275
NCBI chr11:31,640,407...31,666,839
Ensembl chr11:31,640,407...31,664,061
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Ifng
interferon gamma
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:21625544
NCBI chr 7:61,337,383...61,341,419
Ensembl chr 7:61,337,381...61,341,419
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Ikbkb
inhibitor of nuclear factor kappa B kinase subunit beta
treatment
IMP ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:31095431 , PMID:20080200
RGD:7495767
NCBI chr16:74,177,233...74,230,809
Ensembl chr16:74,177,215...74,230,815
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Il10
interleukin 10
disease_progression
ISO
protein:increased expression:blood
RGD
PMID:20595152
RGD:4140400
NCBI chr13:47,738,933...47,743,392
Ensembl chr13:47,739,526...47,743,392
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Il13
interleukin 13
ISO
associated with Respiratory Distress Syndrome, Newborn; protein:increased expression:bronchoalveolar lavage fluid CTD Direct Evidence: marker/mechanism
CTD
PMID:21625544 , PMID:19695190
RGD:4145774
NCBI chr10:38,982,909...38,985,466
Ensembl chr10:38,982,909...38,985,466
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Il13ra2
interleukin 13 receptor subunit alpha 2
ISO
mRNA:increased expression:lung, fibroblast
RGD
PMID:15161635
RGD:4890021
NCBI chr X:118,443,955...118,514,716
Ensembl chr X:118,443,823...118,513,061
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Il17a
interleukin 17A
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:21625544 , PMID:20498020 , PMID:22848348
RGD:4888524 , RGD:9068417
NCBI chr 9:26,841,299...26,844,786
Ensembl chr 9:26,841,299...26,844,786
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Il18
interleukin 18
ISO IEP
protein:increased expression:serum CTD Direct Evidence: marker/mechanism associated with reperfusion injury mRNA, protein:increased expression:lung,bronchoalveolar fluid
CTD
PMID:21625544 , PMID:15955140 , PMID:16052682 , PMID:11739527 , PMID:17400729
RGD:4889836 , RGD:4889825 , RGD:729357 , RGD:4889590
NCBI chr 8:55,009,666...55,016,286
Ensembl chr 8:54,993,859...55,016,299
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Il1a
interleukin 1 alpha
IEP
mRNA:increased expression:lung
RGD
PMID:8806881
RGD:7794765
NCBI chr 3:121,824,712...121,836,122
Ensembl chr 3:121,825,412...121,836,086
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Il1b
interleukin 1 beta
ISO IEP
CTD Direct Evidence: marker/mechanism mRNA:increased expression:lung protein:increased expression:lung mRNA, protein:increased expression:lung
CTD
PMID:21625544 , PMID:20007584 , PMID:20476872 , PMID:19901996 , PMID:19825784 , PMID:20155581
RGD:4142812 , RGD:4142536 , RGD:4143211 , RGD:4142831 , RGD:4142827
NCBI chr 3:121,876,256...121,882,637
Ensembl chr 3:121,876,263...121,882,726
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Il1r1
interleukin 1 receptor type 1
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:21625544
NCBI chr 9:46,962,291...47,038,139
Ensembl chr 9:46,962,288...47,036,670
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Il1r2
interleukin 1 receptor type 2
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:21625544
NCBI chr 9:46,840,646...46,881,241
Ensembl chr 9:46,840,992...46,881,264
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Il1rn
interleukin 1 receptor antagonist
no_association disease_progression
ISO IEP
mRNA:increased expression:lung mRNA:increased expression:bronchioalveolar lavage fluid, neutrophil (rat) DNA:polymorphism (human) DNA:polymorphism:intron (human)
RGD
PMID:17569781 , PMID:1385928 , PMID:16369129 , PMID:19900796 , PMID:18838927
RGD:4142871 , RGD:8551846 , RGD:4143213 , RGD:4143204 , RGD:4142865
NCBI chr 3:1,449,778...1,468,624
Ensembl chr 3:1,452,644...1,468,614
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Il27
interleukin 27
ISO
RGD
PMID:19124731
RGD:5128483
NCBI chr 1:198,003,615...198,010,112
Ensembl chr 1:198,003,683...198,008,893
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Il2rb
interleukin 2 receptor subunit beta
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:21625544
NCBI chr 7:119,701,338...119,716,238
Ensembl chr 7:119,701,251...119,716,238
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Il33
interleukin 33
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:24453940
NCBI chr 1:248,112,611...248,147,030
Ensembl chr 1:248,132,090...248,147,029
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Il4
interleukin 4
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:21625544
NCBI chr10:38,963,979...38,969,531
Ensembl chr10:38,963,979...38,969,531
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Il4r
interleukin 4 receptor
ISO
mRNA:decreased expression:bronchoalveolar lavage (human)
RGD
PMID:32407669
RGD:30296672
NCBI chr 1:196,942,343...196,967,221
Ensembl chr 1:196,942,364...196,967,220
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Il5ra
interleukin 5 receptor subunit alpha
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:21625544
NCBI chr 4:138,796,165...138,834,164
Ensembl chr 4:138,795,327...138,830,117
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Il6
interleukin 6
disease_progression
ISO
protein:increased expression:blood CTD Direct Evidence: marker/mechanism
CTD
PMID:21625544 , PMID:20595152
RGD:4140400
NCBI chr 4:3,043,231...3,047,807
Ensembl chr 4:3,043,231...3,047,807
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Il6st
interleukin 6 signal transducer
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:21625544
NCBI chr 2:44,279,199...44,319,427
Ensembl chr 2:44,289,393...44,314,944
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Itga2
integrin subunit alpha 2
treatment
ISO
RGD
PMID:11207307
RGD:8693217
NCBI chr 2:46,996,904...47,097,011
Ensembl chr 2:47,000,323...47,096,961
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Itga4
integrin subunit alpha 4
treatment
IMP
RGD
PMID:8703473
RGD:9698424
NCBI chr 3:66,178,745...66,265,547
Ensembl chr 3:66,193,059...66,263,960
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Itgb2
integrin subunit beta 2
IMP ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:21625544 , PMID:10030843
RGD:6482228
NCBI chr20:11,777,773...11,815,647
Ensembl chr20:11,777,783...11,815,647
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Itgb3
integrin subunit beta 3
disease_progression
ISO
RGD
PMID:12746502
RGD:5100478
NCBI chr10:92,667,869...92,783,413
Ensembl chr10:92,667,869...92,783,410
G
Lias
lipoic acid synthetase
ISO
CTD Direct Evidence: therapeutic
CTD
PMID:32017981
NCBI chr14:44,507,217...44,524,287
Ensembl chr14:44,507,218...44,524,252
G
Mbl2
mannose binding lectin 2
ISO
protein:increased secretion:lung (human) protein:increased expression:Bronchoalveolar lavage:
RGD
PMID:18988662 , PMID:15249448
RGD:4889459 , RGD:8693755
NCBI chr 1:248,435,069...248,442,669
Ensembl chr 1:248,723,397...248,729,962
G
Mif
macrophage migration inhibitory factor
severity
ISO
DNA:repeats:promoter
RGD
PMID:19346297
RGD:4891058
NCBI chr20:13,715,219...13,732,980
Ensembl chr20:13,732,198...13,732,859
G
Mir20a
microRNA 20a
ISO
RGD
PMID:29115456
RGD:25823151
NCBI chr15:100,180,334...100,180,418
Ensembl chr15:100,180,334...100,180,418
G
Mmp9
matrix metallopeptidase 9
ISO
RGD
PMID:18007984
RGD:5130157
NCBI chr 3:161,413,410...161,421,473
Ensembl chr 3:161,413,298...161,421,520
G
Muc1
mucin 1, cell surface associated
ISO
protein:increased expression:serum
RGD
PMID:11802251
RGD:5131281
NCBI chr 2:188,543,137...188,547,874
Ensembl chr 2:188,543,137...188,547,874
G
Muc2
mucin 2, oligomeric mucus/gel-forming
treatment
IDA
RGD
PMID:23590300
RGD:7349359
NCBI chr 1:214,663,929...214,693,197
G
Myd88
MYD88, innate immune signal transduction adaptor
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:26882889
NCBI chr 8:128,022,512...128,027,462
Ensembl chr 8:128,022,473...128,026,841
G
Mylk
myosin light chain kinase
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:15863634
NCBI chr11:69,013,060...69,260,039
Ensembl chr11:69,013,050...69,223,158
G
Parp1
poly (ADP-ribose) polymerase 1
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:20561897
NCBI chr13:98,857,255...98,889,444
Ensembl chr13:98,857,177...98,889,716
G
Pf4
platelet factor 4
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:21625544
NCBI chr14:18,848,549...18,849,258
Ensembl chr14:18,848,549...18,849,258
G
Pomc
proopiomelanocortin
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:6254450
NCBI chr 6:28,382,937...28,388,771
Ensembl chr 6:28,382,962...28,388,967
G
Reg3b
regenerating family member 3 beta
IDA
RGD
PMID:12579542
RGD:9831426
NCBI chr 4:109,467,272...109,470,510
Ensembl chr 4:109,467,272...109,470,510
G
Serpine1
serpin family E member 1
disease_progression
ISO
Pneumonia, Ventilator-Associated; protein:increased expression:Bronchoalveolar Lavage Fluid DNA:polymorphism:promoter:
RGD
PMID:20473240 , PMID:19387177
RGD:4143511 , RGD:4143525
NCBI chr12:22,641,104...22,651,482
Ensembl chr12:22,641,104...22,651,482
G
Sftpa1
surfactant protein A1
ISO
protein:decreased expression:lung
RGD
PMID:15967375 , PMID:8542113
RGD:4143394 , RGD:4143452
NCBI chr16:18,716,019...18,719,404
Ensembl chr16:18,716,019...18,719,403
G
Sftpb
surfactant protein B
ISO
RGD
PMID:12594064 , PMID:16024721 , PMID:15967375
RGD:4143412 , RGD:4143393 , RGD:4143394
NCBI chr 4:100,166,855...100,175,941
Ensembl chr 4:100,166,863...100,175,938
G
Sftpc
surfactant protein C
ISO
RGD
PMID:15967375
RGD:4143394
NCBI chr15:52,211,538...52,214,480
Ensembl chr15:52,211,544...52,214,616
G
Sftpd
surfactant protein D
ISO
associated with Bronchitis;protein:decreased expression:lung
RGD
PMID:18266831 , PMID:17925426 , PMID:15967375
RGD:4143517 , RGD:4143504 , RGD:4143394
NCBI chr16:18,753,535...18,766,100
Ensembl chr16:18,745,458...18,766,174
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Sirt1
sirtuin 1
ISO
CTD Direct Evidence: therapeutic
CTD
PMID:24633890
NCBI chr20:26,831,971...26,851,587
Ensembl chr20:26,833,357...26,852,199
G
Slc11a2
solute carrier family 11 member 2
IMP
RGD
PMID:21278260
RGD:5688709
NCBI chr 7:142,025,812...142,062,892
Ensembl chr 7:142,025,815...142,063,212
G
Sod3
superoxide dismutase 3
ISO
RGD
PMID:16842247
RGD:1581268
NCBI chr14:60,958,583...60,971,143
Ensembl chr14:60,958,592...60,964,324
G
Spp1
secreted phosphoprotein 1
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:21625544
NCBI chr14:6,673,686...6,679,965
Ensembl chr14:6,673,686...6,679,901
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Tgfb1
transforming growth factor, beta 1
severity
ISO
CTD Direct Evidence: marker/mechanism protein:increased expression:lung
CTD
PMID:21625544 , PMID:19181604 , PMID:19965809
RGD:4145141 , RGD:4145120
NCBI chr 1:82,480,875...82,497,196
Ensembl chr 1:82,480,195...82,497,199
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Tlr2
toll-like receptor 2
susceptibility
ISO
RGD
PMID:19011150
RGD:4145330
NCBI chr 2:182,840,171...182,846,061
Ensembl chr 2:182,840,727...182,846,061
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Tlr4
toll-like receptor 4
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:26882889 , PMID:20357263
RGD:4142858
NCBI chr 5:82,587,424...82,601,056
Ensembl chr 5:82,587,420...82,601,052
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Tnc
tenascin C
ISO
protein:increased expression:serum, respiratory system fluid/secretion
RGD
PMID:19721293
RGD:4889573
NCBI chr 5:79,789,686...79,874,555
Ensembl chr 5:79,789,671...79,874,671
G
Tnf
tumor necrosis factor
ISO
CTD Direct Evidence: marker/mechanism|therapeutic
CTD
PMID:21625544 PMID:28917655
NCBI chr20:5,189,382...5,192,000
Ensembl chr20:5,189,390...5,192,000
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Tnfrsf1a
TNF receptor superfamily member 1A
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:21625544
NCBI chr 4:157,864,905...157,877,634
Ensembl chr 4:157,864,969...157,877,633
G
Tnfrsf1b
TNF receptor superfamily member 1B
susceptibility
ISO
Idiopathic Pneumonia Syndrome CTD Direct Evidence: marker/mechanism associated with Carcinoma, Non-Small-Cell Lung; DNA:snp:cds:p.M196R rs1061622 (human)
CTD
PMID:21625544 , PMID:18664626 , PMID:20811626
RGD:5131448 , RGD:5131286
NCBI chr 5:163,136,390...163,167,299
Ensembl chr 5:163,136,390...163,167,299
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Tnfsf12
TNF superfamily member 12
ISO
mRNA:decreased expression:bronchoalveolar lavage (human)
RGD
PMID:32407669
RGD:30296672
NCBI chr10:56,290,780...56,300,137
Ensembl chr10:56,290,780...56,300,077
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Ttr
transthyretin
ISO
ClinVar Annotator: match by term: Pneumonia
ClinVar
PMID:1351039 PMID:1358785 PMID:1997217 PMID:2002274 PMID:2063870 PMID:2237288 PMID:2320592 PMID:2349941 PMID:2590199 PMID:2646319 PMID:3030336 PMID:3229002 PMID:3627183 PMID:3934968 PMID:7868124 PMID:8698351 PMID:9017939 PMID:10762172 PMID:10842715 PMID:11385707 PMID:11752419 PMID:11752443 PMID:12050338 PMID:12217248 PMID:12874413 PMID:12874414 PMID:14569203 PMID:14640030 PMID:15123043 PMID:15299606 PMID:15820680 PMID:16011990 PMID:16432141 PMID:16631014 PMID:16631015 PMID:17251346 PMID:17503405 PMID:18276611 PMID:18318779 PMID:18830126 PMID:19781421 PMID:20301373 PMID:20435197 PMID:21600538 PMID:22083004 PMID:22184092 PMID:22745357 PMID:22877808 PMID:22995991 PMID:23414091 PMID:23713495 PMID:23716704 PMID:24073013 PMID:24184229 PMID:24474780 PMID:24517438 PMID:24633258 PMID:24818650 PMID:24945718 PMID:25225131 PMID:25395306 PMID:25551524 PMID:25741868 PMID:25819286 PMID:25846356 PMID:26123279 PMID:26428663 PMID:26467025 PMID:26537620 PMID:28492532
NCBI chr18:15,532,963...15,542,180
Ensembl chr18:15,532,963...15,540,177
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Vdr
vitamin D receptor
susceptibility
ISO
DNA:SNP: :rs2239185(human)
RGD
PMID:17224129 , PMID:25367052
RGD:4889851 , RGD:11074745
NCBI chr 7:139,344,452...139,394,138
Ensembl chr 7:139,342,063...139,394,166
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Bmp1
bone morphogenetic protein 1
ISO
ClinVar Annotator: match by term: Hamman-Rich syndrome
ClinVar
PMID:24033266 PMID:25741868
NCBI chr15:52,166,401...52,210,786
Ensembl chr15:52,166,401...52,210,746
G
Sftpc
surfactant protein C
ISO
ClinVar Annotator: match by term: Hamman-Rich syndrome
ClinVar
PMID:15516475 PMID:19910179 PMID:24033266 PMID:25741868 PMID:28492532
NCBI chr15:52,211,538...52,214,480
Ensembl chr15:52,211,544...52,214,616
G
Tert
telomerase reverse transcriptase
ISO
ClinVar Annotator: match by term: Hamman-Rich syndrome
ClinVar
PMID:28492532
NCBI chr 1:32,250,876...32,275,330
Ensembl chr 1:32,251,714...32,272,476
G
Ace
angiotensin I converting enzyme
ISO
associated with Cerebrovascular Accident
RGD
PMID:14990394
RGD:4140926
NCBI chr10:94,170,766...94,213,831
Ensembl chr10:94,170,766...94,187,822
G
Cxcl1
C-X-C motif chemokine ligand 1
IEP
RGD
PMID:19515386
RGD:4891456
NCBI chr14:18,743,678...18,745,457
Ensembl chr14:18,743,685...18,745,457
G
Cxcl2
C-X-C motif chemokine ligand 2
IEP
RGD
PMID:19515386
RGD:4891456
NCBI chr14:18,731,346...18,733,391
Ensembl chr14:18,731,378...18,733,391
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Edn1
endothelin 1
IEP
protein:increased secretion:plasma (rat)
RGD
PMID:19262391
RGD:4145069
NCBI chr17:22,136,814...22,143,745
Ensembl chr17:22,137,324...22,143,324
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Flna
filamin A
ISO
ClinVar Annotator: match by term: Aspiration pneumonia
ClinVar
PMID:28492532 PMID:30311386
NCBI chr X:156,460,785...156,487,245
Ensembl chr X:156,463,953...156,487,245
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Il1a
interleukin 1 alpha
IEP
protein:increased expression:Bronchoalveolar Lavage Fluid
RGD
PMID:18042282
RGD:4142854
NCBI chr 3:121,824,712...121,836,122
Ensembl chr 3:121,825,412...121,836,086
G
Iqsec2
IQ motif and Sec7 domain ArfGEF 2
ISO
ClinVar Annotator: match by term: Aspiration pneumonia
ClinVar
PMID:30311386
NCBI chr X:22,212,137...22,293,810
Ensembl chr X:22,212,132...22,294,402
G
Nos2
nitric oxide synthase 2
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:15607125
NCBI chr10:66,188,290...66,221,621
Ensembl chr10:66,189,786...66,313,190
G
Plec
plectin
ISO
ClinVar Annotator: match by term: Aspiration pneumonia
ClinVar
PMID:28492532 PMID:30311386
NCBI chr 7:117,230,319...117,291,859
Ensembl chr 7:117,230,319...117,289,961
G
Tnf
tumor necrosis factor
IEP
protein:increased expression:Bronchoalveolar Lavage Fluid
RGD
PMID:18042282
RGD:4142854
NCBI chr20:5,189,382...5,192,000
Ensembl chr20:5,189,390...5,192,000
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Abcc1
ATP binding cassette subfamily C member 1
ISO
RGD
PMID:11238654
RGD:5128828
NCBI chr10:549,537...672,235
Ensembl chr10:549,883...672,196
G
Ace2
angiotensin I converting enzyme 2
ISO
associated with Pseudomonas Infections;mRNA, protein:altered expression, altered activity:lung (mouse)
RGD
PMID:31645418
RGD:40818279
NCBI chr X:32,050,734...32,095,860
Ensembl chr X:32,049,931...32,096,016
G
Ager
advanced glycosylation end product-specific receptor
severity
ISO
RGD
PMID:21629785
RGD:6767559
NCBI chr20:4,363,152...4,366,079
Ensembl chr20:4,363,152...4,366,079
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C3
complement C3
ISO
RGD
PMID:16014897
RGD:5129508
NCBI chr 9:9,721,137...9,747,084
Ensembl chr 9:9,721,105...9,747,167
G
C3ar1
complement C3a receptor 1
ISO
RGD
PMID:16461429
RGD:5129690
NCBI chr 4:155,681,767...155,691,240
Ensembl chr 4:155,684,029...155,690,869
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C5
complement C5
ISO
RGD
PMID:17975174
RGD:5129707
NCBI chr 3:14,049,993...14,113,931 NCBI chr 3:14,206,466...14,229,141
Ensembl chr 3:14,049,995...14,229,080
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Cat
catalase
IDA
protein:decreased expression:lung, plasma
RGD
PMID:19842849
RGD:5130748
NCBI chr 3:93,379,872...93,412,058
Ensembl chr 3:93,379,874...93,412,058
G
Ccl19
C-C motif chemokine ligand 19
ISO
mRNA, protein:increased expression:lung
RGD
PMID:20176793
RGD:5130918
NCBI chr 5:58,181,025...58,182,969
Ensembl chr 5:58,181,026...58,183,017
G
Ccl2
C-C motif chemokine ligand 2
ISO
RGD
PMID:20042590
RGD:4891443
NCBI chr10:69,412,065...69,413,863
Ensembl chr10:69,412,017...69,413,870
G
Ccl4
C-C motif chemokine ligand 4
ISO
RGD
PMID:20483921
RGD:5130905
NCBI chr10:70,870,926...70,886,357
Ensembl chr10:70,884,531...70,886,355
G
Ccr2
C-C motif chemokine receptor 2
ISO
RGD
PMID:20042590
RGD:4891443
G
Ccr7
C-C motif chemokine receptor 7
ISO
RGD
PMID:20176793
RGD:5130918
NCBI chr10:87,057,335...87,067,444
Ensembl chr10:87,057,136...87,067,456
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Cd14
CD14 molecule
ISO
RGD
PMID:16210672
RGD:4144197
NCBI chr18:29,560,341...29,562,290
Ensembl chr18:29,560,365...29,562,153
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Cd40
CD40 molecule
ISO
RGD
PMID:20102413
RGD:5132268
NCBI chr 3:161,519,789...161,534,943
Ensembl chr 3:161,519,743...161,534,704
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Cd80
Cd80 molecule
ISO
RGD
PMID:20949109
RGD:4892562
NCBI chr11:64,815,201...64,855,293
Ensembl chr11:64,827,635...64,855,353
G
Chuk
component of inhibitor of nuclear factor kappa B kinase complex
ISO
RGD
PMID:18643924
RGD:5133701
NCBI chr 1:263,848,829...263,884,354
Ensembl chr 1:263,848,884...263,885,169
G
Csf3
colony stimulating factor 3
disease_progression treatment
ISO
associated with Peritonitis;
RGD
PMID:21373266 , PMID:12352049
RGD:5133733 , RGD:11039437
NCBI chr10:86,616,785...86,619,160
Ensembl chr10:86,616,785...86,619,157
G
Csf3r
colony stimulating factor 3 receptor
disease_progression
ISO
RGD
PMID:17185469
RGD:5133739
NCBI chr 5:144,031,353...144,051,966
Ensembl chr 5:144,031,402...144,051,600
G
Cxcl1
C-X-C motif chemokine ligand 1
ISO IEP
RGD
PMID:21723409 , PMID:11052817
RGD:5135062 , RGD:5135234
NCBI chr14:18,743,678...18,745,457
Ensembl chr14:18,743,685...18,745,457
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Cxcl10
C-X-C motif chemokine ligand 10
severity
ISO
RGD
PMID:16299319 , PMID:15618188
RGD:5135458 , RGD:5135459
NCBI chr14:17,210,733...17,212,930
Ensembl chr14:17,210,733...17,212,930
G
Cxcl11
C-X-C motif chemokine ligand 11
ISO
RGD
PMID:15618188
RGD:5135459
NCBI chr14:17,195,395...17,198,170
Ensembl chr14:17,195,014...17,198,291
G
Cxcl2
C-X-C motif chemokine ligand 2
severity
ISO IEP
RGD
PMID:19239431 , PMID:11052817 , PMID:21723409
RGD:5135065 , RGD:5135234 , RGD:5135062
NCBI chr14:18,731,346...18,733,391
Ensembl chr14:18,731,378...18,733,391
G
Cxcl3
C-X-C motif chemokine ligand 3
IEP
RGD
PMID:11052817
RGD:5135234
NCBI chr14:18,820,168...18,839,659
Ensembl chr14:18,820,168...18,839,595
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Cxcl6
C-X-C motif chemokine ligand 6
ISO
RGD
PMID:19846873
RGD:4145490
NCBI chr14:18,860,201...18,920,839
Ensembl chr14:18,860,264...18,862,407
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Cxcl9
C-X-C motif chemokine ligand 9
ISO
RGD
PMID:15618188
RGD:5135459
NCBI chr14:17,228,832...17,233,743
Ensembl chr14:17,228,856...17,234,712
G
Cxcr3
C-X-C motif chemokine receptor 3
ISO
RGD
PMID:15618188
RGD:5135459
NCBI chr X:71,614,346...71,616,997
Ensembl chr X:71,614,346...71,616,997
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Cyp2j4
cytochrome P450, family 2, subfamily j, polypeptide 4
IEP
protein:decreased expression:lung
RGD
PMID:14766666
RGD:1625385
NCBI chr 5:119,546,458...119,564,843
Ensembl chr 5:119,546,461...119,564,846
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Defb4
defensin beta 4
ISO
protein:increased expression:plasma
RGD
PMID:10213993
RGD:4892266
NCBI chr16:75,634,598...75,637,789
Ensembl chr16:75,634,598...75,637,789
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F2
coagulation factor II
IEP
protein:increased expression:lung
RGD
PMID:21897338
RGD:6893486
NCBI chr 3:80,529,468...80,542,993
Ensembl chr 3:80,529,428...80,543,031
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Fcgr2a
Fc fragment of IgG receptor IIa
ISO
RGD
PMID:17975174
RGD:5129707
NCBI chr13:91,146,878...91,163,691
Ensembl chr13:91,168,973...91,198,036 Ensembl chr13:91,168,973...91,198,036
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Foxp3
forkhead box P3
severity
ISO
RGD
PMID:25398094
RGD:38501102
NCBI chr X:15,753,175...15,768,648
Ensembl chr X:15,753,175...15,768,522
G
Icam1
intercellular adhesion molecule 1
ISO
protein:increased expression:lung (mouse)
RGD
PMID:19846873
RGD:4145490
NCBI chr 8:22,035,287...22,047,049
Ensembl chr 8:22,035,256...22,047,059
G
Ifnar1
interferon alpha and beta receptor subunit 1
severity
ISO
RGD
PMID:19487810 , PMID:19487810
RGD:5490274 , RGD:5490274
NCBI chr11:31,640,407...31,666,839
Ensembl chr11:31,640,407...31,664,061
G
Ifng
interferon gamma
severity
ISO
RGD
PMID:25398094
RGD:38501102
NCBI chr 7:61,337,383...61,341,419
Ensembl chr 7:61,337,381...61,341,419
G
Il10
interleukin 10
severity
ISO
RGD
PMID:25398094
RGD:38501102
NCBI chr13:47,738,933...47,743,392
Ensembl chr13:47,739,526...47,743,392
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Il15
interleukin 15
ISO
RGD
PMID:17911627
RGD:5000754
NCBI chr19:23,542,606...23,624,366
Ensembl chr19:23,542,889...23,554,594
G
Il17a
interleukin 17A
severity
ISO
RGD
PMID:18802100 , PMID:25398094
RGD:4889153 , RGD:38501102
NCBI chr 9:26,841,299...26,844,786
Ensembl chr 9:26,841,299...26,844,786
G
Il18
interleukin 18
ISO
RGD
PMID:17664259
RGD:4889913
NCBI chr 8:55,009,666...55,016,286
Ensembl chr 8:54,993,859...55,016,299
G
Il1b
interleukin 1 beta
severity treatment
ISO
associated with Agranulocytosis
RGD
PMID:18596024 , PMID:25398094 , PMID:7546648
RGD:4143205 , RGD:38501102 , RGD:10755357
NCBI chr 3:121,876,256...121,882,637
Ensembl chr 3:121,876,263...121,882,726
G
Il1rl1
interleukin 1 receptor-like 1
treatment
ISO IEP
associated with Sepsis associated with Acinetobacter infectious disease
RGD
PMID:20959556 , PMID:29508184
RGD:5144223 , RGD:40818077
NCBI chr 9:47,133,483...47,184,316
Ensembl chr 9:47,134,034...47,182,170
G
Il1rn
interleukin 1 receptor antagonist
ISO
RGD
PMID:18596024 , PMID:18322242
RGD:4143205 , RGD:4143206
NCBI chr 3:1,449,778...1,468,624
Ensembl chr 3:1,452,644...1,468,614
G
Il22
interleukin 22
ISO
RGD
PMID:21178015
RGD:5147404
NCBI chr 7:61,236,037...61,240,502
Ensembl chr 7:61,236,037...61,240,502
G
Il6
interleukin 6
severity
ISO
RGD
PMID:25398094
RGD:38501102
NCBI chr 4:3,043,231...3,047,807
Ensembl chr 4:3,043,231...3,047,807
G
Irak3
interleukin-1 receptor-associated kinase 3
ISO
RGD
PMID:28120642 , PMID:20439918
RGD:34888234 , RGD:36049799
NCBI chr 7:64,922,830...64,982,224
Ensembl chr 7:64,923,615...64,982,281
G
Irf1
interferon regulatory factor 1
ISO
RGD
PMID:11854220
RGD:5128725
NCBI chr10:39,109,530...39,116,532
Ensembl chr10:39,109,522...39,116,531
G
Irf3
interferon regulatory factor 3
ISO
RGD
PMID:20720199
RGD:4891951
NCBI chr 1:100,992,244...100,997,202
Ensembl chr 1:100,992,405...100,997,198
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Itgb3
integrin subunit beta 3
IEP
protein:increased expression:lung, neutrophil
RGD
PMID:15114484
RGD:4993468
NCBI chr10:92,667,869...92,783,413
Ensembl chr10:92,667,869...92,783,410
G
Lep
leptin
ISO
RGD
PMID:11937559
RGD:5128871
NCBI chr 4:56,337,695...56,351,818
Ensembl chr 4:56,337,695...56,351,818
G
Mbl2
mannose binding lectin 2
ISO
Legionella Pneumonia; DNA:mutations:5' utr, exon:multiple (human)
RGD
PMID:18641104
RGD:4889477
NCBI chr 1:248,435,069...248,442,669
Ensembl chr 1:248,723,397...248,729,962
G
Mc1r
melanocortin 1 receptor
ISO
RGD
PMID:18304533
RGD:5687324
NCBI chr19:56,215,420...56,219,987
G
Mmp9
matrix metallopeptidase 9
ISO
protein:increased expression:bronchoalveolar lavage fluid
RGD
PMID:17202364 , PMID:19535150
RGD:5130727 , RGD:5129533
NCBI chr 3:161,413,410...161,421,473
Ensembl chr 3:161,413,298...161,421,520
G
Mpo
myeloperoxidase
ISO
protein:increased activity:bronchoalveolar lavage Fluid:
RGD
PMID:11269653
RGD:5130992
NCBI chr10:75,087,892...75,098,260
Ensembl chr10:75,087,892...75,098,260
G
Nod1
nucleotide-binding oligomerization domain containing 1
ISO
RGD
PMID:19360122
RGD:5131449
NCBI chr 4:85,123,965...85,175,206
Ensembl chr 4:85,123,960...85,174,951
G
Nod2
nucleotide-binding oligomerization domain containing 2
ISO
RGD
PMID:19360122
RGD:5131449
NCBI chr19:19,342,061...19,389,366
Ensembl chr19:19,332,594...19,377,492
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Pdpn
podoplanin
IEP
protein:increased expression:lung
RGD
PMID:7864138
RGD:2292375
NCBI chr 5:161,947,137...161,981,441
Ensembl chr 5:161,947,137...161,981,441
G
Pecam1
platelet and endothelial cell adhesion molecule 1
IEP
protein:decreased expression:lung
RGD
PMID:12524254
RGD:724645
NCBI chr10:94,850,971...94,913,202
G
Pgf
placental growth factor
ISO
protein:increased expression:plasma
RGD
PMID:16702604
RGD:6483601
NCBI chr 6:108,994,016...109,004,598
Ensembl chr 6:108,994,018...109,004,598
G
Rorc
RAR-related orphan receptor C
severity
ISO
RGD
PMID:25398094
RGD:38501102
NCBI chr 2:195,612,471...195,636,797
Ensembl chr 2:195,617,021...195,637,630
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Serpine1
serpin family E member 1
severity
ISO
RGD
PMID:17032919
RGD:4144840
NCBI chr12:22,641,104...22,651,482
Ensembl chr12:22,641,104...22,651,482
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Sftpa1
surfactant protein A1
IEP
protein:increased expression:lung
RGD
PMID:12169586
RGD:4143464
NCBI chr16:18,716,019...18,719,404
Ensembl chr16:18,716,019...18,719,403
G
Sftpb
surfactant protein B
ISO IEP
associated with Cystic Fibrosis;protein:increased expression:lung
RGD
PMID:15271694 , PMID:12169586
RGD:4143403 , RGD:4143464
NCBI chr 4:100,166,855...100,175,941
Ensembl chr 4:100,166,863...100,175,938
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Sftpc
surfactant protein C
ISO IEP
RGD
PMID:18566429 , PMID:12169586
RGD:4144114 , RGD:4143464
NCBI chr15:52,211,538...52,214,480
Ensembl chr15:52,211,544...52,214,616
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Sftpd
surfactant protein D
ISO IEP
associated with Cystic Fibrosis;protein:decreased expression:lung protein:increased expression:lung
RGD
PMID:15271694 , PMID:12169586
RGD:4143403 , RGD:4143464
NCBI chr16:18,753,535...18,766,100
Ensembl chr16:18,745,458...18,766,174
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Stat3
signal transducer and activator of transcription 3
ISO
RGD
PMID:18192501
RGD:6892945
NCBI chr10:88,790,401...88,842,263
Ensembl chr10:88,790,408...88,842,233
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Tgfb1
transforming growth factor, beta 1
severity
ISO
RGD
PMID:25398094
RGD:38501102
NCBI chr 1:82,480,875...82,497,196
Ensembl chr 1:82,480,195...82,497,199
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Tlr2
toll-like receptor 2
ISO IDA
RGD
PMID:18768871 , PMID:19844782
RGD:4145337 , RGD:4889533
NCBI chr 2:182,840,171...182,846,061
Ensembl chr 2:182,840,727...182,846,061
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Tlr4
toll-like receptor 4
ISO
RGD
PMID:20650991 , PMID:16210672
RGD:4144172 , RGD:4144197
NCBI chr 5:82,587,424...82,601,056
Ensembl chr 5:82,587,420...82,601,052
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Tlr5
toll-like receptor 5
ISO
RGD
PMID:19801452
RGD:5129503
NCBI chr13:101,364,784...101,385,764
Ensembl chr13:101,381,510...101,385,764
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Tlr6
toll-like receptor 6
IDA
RGD
PMID:19844782
RGD:4889533
NCBI chr14:45,024,351...45,041,188
Ensembl chr14:45,024,351...45,046,446
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Tlr9
toll-like receptor 9
ISO
RGD
PMID:20360853
RGD:5130719
NCBI chr 8:114,916,122...114,920,171
Ensembl chr 8:114,916,122...114,920,171
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Tnf
tumor necrosis factor
disease_progression treatment severity
ISO
associated with Agranulocytosis
RGD
PMID:10650487 , PMID:7546648 , PMID:9310939 , PMID:12958055
RGD:4143476 , RGD:10755357 , RGD:10450564 , RGD:10449451
NCBI chr20:5,189,382...5,192,000
Ensembl chr20:5,189,390...5,192,000
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Tnfrsf1a
TNF receptor superfamily member 1A
ISO
protein:increased expression:serum (mouse)
RGD
PMID:19842848
RGD:5131429
NCBI chr 4:157,864,905...157,877,634
Ensembl chr 4:157,864,969...157,877,633
G
Tnfrsf1b
TNF receptor superfamily member 1B
ISO
protein:increased expression:serum (mouse)
RGD
PMID:19842848
RGD:5131429
NCBI chr 5:163,136,390...163,167,299
Ensembl chr 5:163,136,390...163,167,299
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Zc3h12a
zinc finger CCCH type containing 12A
ISO
associated with Pseudomonas Infections
RGD
PMID:29695841
RGD:39938967
NCBI chr 5:143,111,342...143,120,131
Ensembl chr 5:143,111,074...143,120,165
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Ccl5
C-C motif chemokine ligand 5
ISO
protein:increased secretion:serum (human)
RGD
PMID:20350425
RGD:4892019
NCBI chr10:70,739,764...70,744,303
Ensembl chr10:70,739,800...70,744,315
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Cxcr2
C-X-C motif chemokine receptor 2
disease_progression
ISO
associated with Plague
RGD
PMID:21356370
RGD:5134954
NCBI chr 9:81,427,275...81,435,065
Ensembl chr 9:81,427,730...81,434,102
G
Mbl2
mannose binding lectin 2
ISO
associated with Down Syndrome; protein:decreased secretion:serum (human)
RGD
PMID:19804807
RGD:4889483
NCBI chr 1:248,435,069...248,442,669
Ensembl chr 1:248,723,397...248,729,962
G
Pik3cd
phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit delta
severity
ISO
RGD
PMID:29893841
RGD:40890270
NCBI chr 5:166,602,053...166,628,028
Ensembl chr 5:166,602,053...166,628,028
G
Tnfrsf1a
TNF receptor superfamily member 1A
ISO
protein:increased expression:lung, macrophage (human)
RGD
PMID:21144722
RGD:5131112
NCBI chr 4:157,864,905...157,877,634
Ensembl chr 4:157,864,969...157,877,633
G
Tnfrsf1b
TNF receptor superfamily member 1B
ISO
protein:increased expression:lung, lymphocyte (human)
RGD
PMID:21144722
RGD:5131112
NCBI chr 5:163,136,390...163,167,299
Ensembl chr 5:163,136,390...163,167,299
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Sftpc
surfactant protein C
ISS
OMIM:263000
MouseDO
NCBI chr15:52,211,538...52,214,480
Ensembl chr15:52,211,544...52,214,616
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Cxcl6
C-X-C motif chemokine ligand 6
ISO
associated with Scleroderma, Diffuse protein:increased expression:serum
RGD
PMID:18432520 , PMID:16085216
RGD:5135258 , RGD:5135260
NCBI chr14:18,860,201...18,920,839
Ensembl chr14:18,860,264...18,862,407
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Icam1
intercellular adhesion molecule 1
ISO
protein:increased expression:lung, alveolar macrophage (human)
RGD
PMID:19218648
RGD:4145518
NCBI chr 8:22,035,287...22,047,049
Ensembl chr 8:22,035,256...22,047,059
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Il6
interleukin 6
IEP
protein:increased expression:bronchoalveolar lavage (rat)
RGD
PMID:10988147
RGD:11062092
NCBI chr 4:3,043,231...3,047,807
Ensembl chr 4:3,043,231...3,047,807
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Keap1
Kelch-like ECH-associated protein 1
ISO
protein:increased expression:hyperplastic lung epithelium, alveolus (human)
RGD
PMID:20718723
RGD:6893300
NCBI chr 8:22,250,518...22,259,868
Ensembl chr 8:22,250,518...22,259,779
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Mtor
mechanistic target of rapamycin kinase
ISO
RGD
PMID:21444868
RGD:7245946
NCBI chr 5:165,263,813...165,373,967
Ensembl chr 5:165,263,800...165,373,967
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Scgb1a1
secretoglobin family 1A member 1
ISO
protein:increased expression:serum
RGD
PMID:15467329
RGD:5144148
NCBI chr 1:225,279,698...225,283,246
Ensembl chr 1:225,279,676...225,283,326
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Abca3
ATP binding cassette subfamily A member 3
ISO
ClinVar Annotator: match by term: Idiopathic fibrosing alveolitis, chronic form
ClinVar
PMID:25741868
NCBI chr10:13,723,365...13,780,558
Ensembl chr10:13,723,405...13,779,963
G
Ahrr
aryl-hydrocarbon receptor repressor
ISO
ClinVar Annotator: match by term: Idiopathic fibrosing alveolitis, chronic form
ClinVar
PMID:12629597 PMID:28492532
NCBI chr 1:31,603,297...31,698,329
Ensembl chr 1:31,603,297...31,698,329
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Apoa1
apolipoprotein A1
ISO
protein: decreased expression: respiratory system fluid/secretion
RGD
PMID:20463180
RGD:5508222
NCBI chr 8:50,525,091...50,526,875
Ensembl chr 8:50,525,091...50,526,875
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Atp11a
ATPase phospholipid transporting 11A
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:23583980
NCBI chr16:81,990,340...82,100,222
Ensembl chr16:81,990,340...82,100,222
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Bmp1
bone morphogenetic protein 1
ISO
ClinVar Annotator: match by term: Idiopathic Pulmonary Fibrosis
ClinVar
PMID:24033266 PMID:25741868
NCBI chr15:52,166,401...52,210,786
Ensembl chr15:52,166,401...52,210,746
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Brd4
bromodomain containing 4
ISO
RGD
PMID:23759512
RGD:9586353
NCBI chr 7:14,222,101...14,303,055
Ensembl chr 7:14,222,101...14,303,055
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Brd9
bromodomain containing 9
ISO
ClinVar Annotator: match by term: Idiopathic fibrosing alveolitis, chronic form
ClinVar
PMID:12629597 PMID:28492532
NCBI chr 1:31,939,612...31,968,120
Ensembl chr 1:31,939,585...31,967,915
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Ccl12
chemokine (C-C motif) ligand 12
ISO
CTD Direct Evidence: therapeutic
CTD
PMID:28434932
NCBI chr10:69,476,866...69,478,416
Ensembl chr10:69,476,775...69,478,462
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Cep72
centrosomal protein 72
ISO
ClinVar Annotator: match by term: Idiopathic fibrosing alveolitis, chronic form
ClinVar
PMID:12629597 PMID:28492532
NCBI chr 1:31,834,977...31,864,938
Ensembl chr 1:31,835,000...31,864,628
G
Cflar
CASP8 and FADD-like apoptosis regulator
ISO
mRNA,protein:increased expression:lung myofibroblast:
RGD
PMID:22582174
RGD:11341695
NCBI chr 9:65,534,608...65,586,395
Ensembl chr 9:65,534,704...65,587,251
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Ctc1
CST telomere replication complex component 1
ISO
ClinVar Annotator: match by term: Idiopathic fibrosing alveolitis, chronic form
ClinVar
NCBI chr10:55,596,172...55,616,873
Ensembl chr10:55,596,148...55,616,889
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Cxcl6
C-X-C motif chemokine ligand 6
ISO
DNA:polymorphism:promoter:-156G>C (human) protein:increased expression:lung, macrophage, type II pneumocyte
RGD
PMID:20137269 , PMID:11751193
RGD:5135241 , RGD:5135250
NCBI chr14:18,860,201...18,920,839
Ensembl chr14:18,860,264...18,862,407
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Dpp9
dipeptidyl peptidase 9
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:23583980
NCBI chr 9:10,846,493...10,882,560
Ensembl chr 9:10,846,596...10,882,649
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Dsp
desmoplakin
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:23583980
NCBI chr17:27,286,811...27,334,453
Ensembl chr17:27,286,796...27,334,379
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Dtnbp1
dystrobrevin binding protein 1
ISO
ClinVar Annotator: match by term: Idiopathic fibrosing alveolitis, chronic form
ClinVar
NCBI chr17:20,090,136...20,182,332
Ensembl chr17:20,090,246...20,182,206
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Ehmt2
euchromatic histone lysine methyltransferase 2
ISO
RGD
PMID:24652950
RGD:9589169
NCBI chr20:4,576,033...4,592,980
Ensembl chr20:4,576,057...4,592,980
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Esr1
estrogen receptor 1
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:30165855
NCBI chr 1:41,192,029...41,594,799
Ensembl chr 1:41,192,824...41,594,796
G
Exoc3
exocyst complex component 3
ISO
ClinVar Annotator: match by term: Idiopathic fibrosing alveolitis, chronic form
ClinVar
PMID:12629597 PMID:28492532
NCBI chr 1:31,700,953...31,731,726
Ensembl chr 1:31,700,953...31,731,815
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F3
coagulation factor III, tissue factor
ISO
protein:increased expression:respiratory system fluid/secretion
RGD
PMID:10946084
RGD:11060143
NCBI chr 2:225,310,686...225,322,281
Ensembl chr 2:225,310,624...225,322,272
G
Fam13a
family with sequence similarity 13, member A
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:23583980
NCBI chr 4:89,183,180...89,281,282
Ensembl chr 4:89,183,768...89,281,222
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Fas
Fas cell surface death receptor
ISO
RGD
PMID:15148335
RGD:11049166
NCBI chr 1:252,589,785...252,624,790
Ensembl chr 1:252,589,785...252,624,790
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Faslg
Fas ligand
ISO
RGD
PMID:15148335
RGD:11049166
NCBI chr13:79,696,811...79,717,581
Ensembl chr13:79,698,445...79,705,705
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Fosl2
FOS like 2, AP-1 transcription factor subunit
ISS
OMIM:178500
MouseDO
NCBI chr 6:25,598,936...25,616,995
Ensembl chr 6:25,598,936...25,616,995
G
Gper1
G protein-coupled estrogen receptor 1
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:30165855
NCBI chr12:17,309,122...17,315,267
Ensembl chr12:17,309,834...17,311,112
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Hif1a
hypoxia inducible factor 1 subunit alpha
ISO
CTD Direct Evidence: therapeutic
CTD
PMID:28434932
NCBI chr 6:96,810,868...96,856,303
Ensembl chr 6:96,810,907...96,856,052
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Hps4
HPS4, biogenesis of lysosomal organelles complex 3 subunit 2
ISO
ClinVar Annotator: match by term: Idiopathic fibrosing alveolitis, chronic form
ClinVar
NCBI chr12:50,285,239...50,315,893
Ensembl chr12:50,285,278...50,314,406
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Il1rl1
interleukin 1 receptor-like 1
ISO
protein:increased expression:serum
RGD
PMID:14555548
RGD:5144236
NCBI chr 9:47,133,483...47,184,316
Ensembl chr 9:47,134,034...47,182,170
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Il1rn
interleukin 1 receptor antagonist
ISO
ClinVar Annotator: match by term: Idiopathic fibrosing alveolitis, chronic form
ClinVar
NCBI chr 3:1,449,778...1,468,624
Ensembl chr 3:1,452,644...1,468,614
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Il2ra
interleukin 2 receptor subunit alpha
ISO
RGD
PMID:21309737
RGD:5147438
NCBI chr17:70,500,672...70,547,929
Ensembl chr17:70,499,083...70,548,071
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Lama3
laminin subunit alpha 3
ISO
ClinVar Annotator: match by term: Idiopathic fibrosing alveolitis, chronic form
ClinVar
NCBI chr18:3,704,866...3,941,215
Ensembl chr18:3,705,916...3,940,838
G
Mmp1
matrix metallopeptidase 1
ISO
protein:increased expression:lung,bronchoalveolar lavage fluid: ClinVar Annotator: match by term: Idiopathic fibrosing alveolitis, chronic form
ClinVar
PMID:18447576
RGD:4890373
NCBI chr 8:5,703,206...5,723,593
Ensembl chr 8:5,703,206...5,723,591
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Mmp19
matrix metallopeptidase 19
ISO
ClinVar Annotator: match by term: Idiopathic fibrosing alveolitis, chronic form
ClinVar
NCBI chr 7:3,216,392...3,224,202
Ensembl chr 7:3,216,497...3,224,201
G
Mmp3
matrix metallopeptidase 3
ISO
mRNA, protein:increased expression:lung CTD Direct Evidence: therapeutic
CTD
PMID:28434932 , PMID:21871427
RGD:8694097
NCBI chr 8:5,676,608...5,698,579
Ensembl chr 8:5,676,665...5,698,579
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Muc1
mucin 1, cell surface associated
ISO
protein:increased expression:serum:
RGD
PMID:22963039
RGD:7244290
NCBI chr 2:188,543,137...188,547,874
Ensembl chr 2:188,543,137...188,547,874
G
Muc5b
mucin 5B, oligomeric mucus/gel-forming
ISO
ClinVar Annotator: match by term: Pulmonary fibrosis, idiopathic, susceptibility to CTD Direct Evidence: marker/mechanism
OMIM ClinVar CTD
PMID:21506741 PMID:21506748 PMID:23321605 PMID:23583980 PMID:23692170 PMID:23695349 PMID:23940607 PMID:24033266 PMID:25926289 PMID:30345907
NCBI chr 1:214,778,459...214,811,237
Ensembl chr 1:214,778,496...214,810,720
G
Nkd2
NKD inhibitor of WNT signaling pathway 2
ISO
ClinVar Annotator: match by term: Idiopathic fibrosing alveolitis, chronic form
ClinVar
PMID:12629597 PMID:28492532
NCBI chr 1:32,054,390...32,085,416
Ensembl chr 1:32,058,044...32,084,877
G
Ntrk2
neurotrophic receptor tyrosine kinase 2
ISO
mRNA:increased expression:lung
RGD
PMID:21330466
RGD:5684550
NCBI chr17:5,934,651...6,245,778
Ensembl chr17:5,933,729...6,244,676
G
Parn
poly(A)-specific ribonuclease
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:25848748
NCBI chr10:1,309,724...1,461,123
Ensembl chr10:1,308,414...1,461,269
G
Parp1
poly (ADP-ribose) polymerase 1
ISO
mRNA,protein:increased expression, increased activity:fibroblast
RGD
PMID:23260200
RGD:10413908
NCBI chr13:98,857,255...98,889,444
Ensembl chr13:98,857,177...98,889,716
G
Pdcd6
programmed cell death 6
ISO
ClinVar Annotator: match by term: Idiopathic fibrosing alveolitis, chronic form
ClinVar
PMID:12629597 PMID:28492532
NCBI chr 1:31,576,183...31,591,852
Ensembl chr 1:31,576,183...31,591,849
G
Plau
plasminogen activator, urokinase
ISO
CTD Direct Evidence: therapeutic
CTD
PMID:18491991
NCBI chr15:3,644,296...3,650,765
Ensembl chr15:3,644,769...3,650,819
G
Ptgs2
prostaglandin-endoperoxide synthase 2
ISO
DNA:SNPs: :3050G>C, 8473C>T (human) protein:decreased expression:lung:
RGD
PMID:21319594 , PMID:14511257 , PMID:20203246
RGD:5135280 , RGD:5135507 , RGD:5135461
NCBI chr13:67,351,230...67,356,920
Ensembl chr13:67,351,087...67,359,335
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RT1-Db1
RT1 class II, locus Db1
susceptibility
ISO
DNA:polymorphism (human)
RGD
PMID:21373184
RGD:5147566
NCBI chr20:4,087,621...4,097,190
Ensembl chr20:4,087,618...4,097,190
G
Rtel1
regulator of telomere elongation helicase 1
ISO
ClinVar Annotator: match by term: Idiopathic fibrosing alveolitis, chronic form CTD Direct Evidence: marker/mechanism
ClinVar CTD
PMID:23329068 PMID:23453664 PMID:23959892 PMID:24009516 PMID:24033266 PMID:25047097 PMID:25099625 PMID:25607374 PMID:25620558 PMID:25848748 PMID:26025130 PMID:28099038 PMID:28492532
NCBI chr 3:176,818,012...176,856,531
Ensembl chr 3:176,818,437...176,856,531
G
Rtkn2
rhotekin 2
ISO
ClinVar Annotator: match by term: Idiopathic fibrosing alveolitis, chronic form
ClinVar
NCBI chr20:21,919,486...22,004,279
Ensembl chr20:21,932,878...22,004,279
G
Sdha
succinate dehydrogenase complex flavoprotein subunit A
ISO
ClinVar Annotator: match by term: Idiopathic fibrosing alveolitis, chronic form
ClinVar
PMID:12629597 PMID:28492532
NCBI chr 1:31,545,631...31,570,601
Ensembl chr 1:31,545,631...31,570,601
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Sftpa1
surfactant protein A1
ISO
ClinVar Annotator: match by term: Pulmonary fibrosis, idiopathic, susceptibility to
ClinVar
PMID:13680361 PMID:24033266
NCBI chr16:18,716,019...18,719,404
Ensembl chr16:18,716,019...18,719,403
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Sftpc
surfactant protein C
ISO
CTD Direct Evidence: marker/mechanism ClinVar Annotator: match by term: Idiopathic fibrosing alveolitis, chronic form ClinVar Annotator: match by term: Fibrocystic pulmonary dysplasia ClinVar Annotator: match by term: Idiopathic Pulmonary Fibrosis ClinVar Annotator: match by OMIM:178500
CTD ClinVar
PMID:15039969 PMID:15516475 PMID:18383112 PMID:19443464 PMID:19910179 PMID:22308375 PMID:23025826 PMID:23775869 PMID:24033266 PMID:24081995 PMID:25657025 PMID:25741868 PMID:25782673 PMID:28492532
NCBI chr15:52,211,538...52,214,480
Ensembl chr15:52,211,544...52,214,616
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Slc12a7
solute carrier family 12 member 7
ISO
ClinVar Annotator: match by term: Idiopathic fibrosing alveolitis, chronic form
ClinVar
PMID:12629597 PMID:28492532
NCBI chr 1:32,086,755...32,167,950
Ensembl chr 1:32,086,755...32,141,036
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Slc6a18
solute carrier family 6 member 18
ISO
ClinVar Annotator: match by term: Idiopathic fibrosing alveolitis, chronic form
ClinVar
PMID:12629597 PMID:28492532
NCBI chr 1:32,221,679...32,235,599
Ensembl chr 1:32,221,636...32,236,051
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Slc6a19
solute carrier family 6 member 19
ISO
ClinVar Annotator: match by term: Idiopathic fibrosing alveolitis, chronic form
ClinVar
PMID:12629597 PMID:28492532
NCBI chr 1:32,199,869...32,218,628
Ensembl chr 1:32,199,810...32,220,045
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Slc9a3
solute carrier family 9 member A3
ISO
ClinVar Annotator: match by term: Idiopathic fibrosing alveolitis, chronic form
ClinVar
PMID:12629597 PMID:28492532
NCBI chr 1:31,731,652...31,777,144
Ensembl chr 1:31,734,327...31,777,070
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St14
ST14 transmembrane serine protease matriptase
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:26599507
NCBI chr 8:32,240,113...32,280,813
Ensembl chr 8:32,240,133...32,280,869
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Stat3
signal transducer and activator of transcription 3
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:30481203 , PMID:22684844
RGD:6892915
NCBI chr10:88,790,401...88,842,263
Ensembl chr10:88,790,408...88,842,233
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Stn1
STN1 subunit of CST complex
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:23583980
NCBI chr 1:267,281,786...267,315,714
Ensembl chr 1:267,281,764...267,315,729
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Terc
telomerase RNA component
ISO
ClinVar Annotator: match by term: Idiopathic fibrosing alveolitis, chronic form CTD Direct Evidence: marker/mechanism
ClinVar CTD
PMID:17392301 PMID:17460043 PMID:23535734
NCBI chr 2:116,432,723...116,433,110
Ensembl chr 2:116,432,691...116,433,110
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Tert
telomerase reverse transcriptase
ISO
ClinVar Annotator: match by OMIM:178500 ClinVar Annotator: match by term: Idiopathic fibrosing alveolitis, chronic form CTD Direct Evidence: marker/mechanism DNA:deletion, missense mutations, splice-site mutations:multiple
ClinVar CTD
PMID:12167716 PMID:12629597 PMID:15814878 PMID:15885610 PMID:16247010 PMID:16627250 PMID:16990594 PMID:17264120 PMID:17392301 PMID:17460043 PMID:17785587 PMID:18042801 PMID:18460650 PMID:18635888 PMID:18753630 PMID:18931339 PMID:19147845 PMID:19561322 PMID:19674077 PMID:19760749 PMID:19796246 PMID:20022961 PMID:20502709 PMID:20858879 PMID:20871597 PMID:20966039 PMID:21258621 PMID:21436073 PMID:21483807 PMID:21520173 PMID:21520174 PMID:21602826 PMID:21635204 PMID:21931702 PMID:22037553 PMID:22364217 PMID:22424236 PMID:22476886 PMID:22512499 PMID:22664374 PMID:22853774 PMID:22863003 PMID:23066086 PMID:23157242 PMID:23335200 PMID:23348503 PMID:23535731 PMID:23535734 PMID:23538340 PMID:23583980 PMID:23716176 PMID:23901009 PMID:24033266 PMID:24833766 PMID:24983628 PMID:25108601 PMID:25244922 PMID:25271372 PMID:25346280 PMID:25365545 PMID:25562321 PMID:25741868 PMID:25785092 PMID:26024875 PMID:26136524 PMID:26194807 PMID:26329388 PMID:26360549 PMID:26365799 PMID:26433962 PMID:26887940 PMID:27192671 PMID:27418648 PMID:27824607 PMID:28102861 PMID:28154186 PMID:28192371 PMID:28492532 PMID:28677271 PMID:28767289 PMID:28813500 PMID:29036293 PMID:29382801 PMID:29483670 PMID:30203795 PMID:30426156 PMID:30995915 PMID:31265491 , PMID:17392301
RGD:11038666
NCBI chr 1:32,250,876...32,275,330
Ensembl chr 1:32,251,714...32,272,476
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Tfpi
tissue factor pathway inhibitor
severity
ISO
protein:increased expression:Bronchoalveolar lavage,epithelial cell:
RGD
PMID:10946084
RGD:11060143
NCBI chr 3:71,852,738...71,902,127
Ensembl chr 3:71,852,744...71,893,618
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Thbd
thrombomodulin
severity
ISO
RGD
PMID:20418386
RGD:5685036
NCBI chr 3:142,748,673...142,752,325
Ensembl chr 3:142,748,674...142,752,325
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Tnf
tumor necrosis factor
ISS
OMIM:178500
MouseDO
NCBI chr20:5,189,382...5,192,000
Ensembl chr20:5,189,390...5,192,000
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Tppp
tubulin polymerization promoting protein
ISO
ClinVar Annotator: match by term: Idiopathic fibrosing alveolitis, chronic form
ClinVar
PMID:12629597 PMID:28492532
NCBI chr 1:31,866,755...31,890,778
Ensembl chr 1:31,870,899...31,890,778
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Trip13
thyroid hormone receptor interactor 13
ISO
ClinVar Annotator: match by term: Idiopathic fibrosing alveolitis, chronic form
ClinVar
PMID:12629597 PMID:28492532
NCBI chr 1:31,967,980...32,012,923
Ensembl chr 1:31,967,978...32,012,919
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Wnt5a
Wnt family member 5A
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:28726637
NCBI chr16:4,469,451...4,490,271
Ensembl chr16:4,469,468...4,489,860
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Zdhhc11
zinc finger, DHHC-type containing 11
ISO
ClinVar Annotator: match by term: Idiopathic fibrosing alveolitis, chronic form
ClinVar
PMID:12629597 PMID:28492532
NCBI chr 1:31,906,049...31,936,603
Ensembl chr 1:31,906,064...31,936,537
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Il23a
interleukin 23 subunit alpha
severity
ISO
RGD
PMID:16157683
RGD:39457940
NCBI chr 7:2,710,609...2,712,723
Ensembl chr 7:2,710,609...2,712,723
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Irak3
interleukin-1 receptor-associated kinase 3
severity
ISO
mRNA:increased expression:lung (mouse)
RGD
PMID:22729155 , PMID:20864681
RGD:35316077 , RGD:36049798
NCBI chr 7:64,922,830...64,982,224
Ensembl chr 7:64,923,615...64,982,281
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Ada
adenosine deaminase
ISO
protein:increased expression:serum
RGD
PMID:9255891
RGD:5128857
NCBI chr 3:160,115,840...160,139,947
Ensembl chr 3:160,115,842...160,139,947
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Atp1b2
ATPase Na+/K+ transporting subunit beta 2
severity
ISO
RGD
PMID:28302172
RGD:32716376
NCBI chr10:56,205,622...56,211,879
Ensembl chr10:56,205,625...56,211,891
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Ccl4
C-C motif chemokine ligand 4
ISO
RGD
PMID:16988274
RGD:4892091
NCBI chr10:70,870,926...70,886,357
Ensembl chr10:70,884,531...70,886,355
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Ccl5
C-C motif chemokine ligand 5
ISO
protein:increased secretion:lung, secretion (mouse)
RGD
PMID:18717637
RGD:4891914
NCBI chr10:70,739,764...70,744,303
Ensembl chr10:70,739,800...70,744,315
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Ccr5
C-C motif chemokine receptor 5
ISO
protein:increased expression:lung, T-helper cell (mouse)
RGD
PMID:16988274
RGD:4892091
NCBI chr 8:133,192,398...133,215,599
Ensembl chr 8:133,197,032...133,215,614
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Clec5a
C-type lectin domain containing 5A
severity
ISO
RGD
PMID:28302172
RGD:32716376
NCBI chr 4:68,810,330...68,819,921
Ensembl chr 4:68,808,359...68,819,928
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Col3a1
collagen type III alpha 1 chain
severity
ISO
RGD
PMID:28302172
RGD:32716376
NCBI chr 9:52,023,295...52,059,221
Ensembl chr 9:52,023,295...52,059,217
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Col6a1
collagen type VI alpha 1 chain
severity
ISO
RGD
PMID:28302172
RGD:32716376
NCBI chr20:12,657,913...12,676,370
Ensembl chr20:12,658,065...12,675,561
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Col6a2
collagen type VI alpha 2 chain
severity
ISO
RGD
PMID:28302172
RGD:32716376
NCBI chr20:12,773,472...12,801,179
Ensembl chr20:12,773,427...12,801,180
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Crp
C-reactive protein
ISO
RGD
PMID:21426633
RGD:5131292
NCBI chr13:91,080,448...91,081,358
Ensembl chr13:91,054,974...91,093,713
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Dnase1l3
deoxyribonuclease 1-like 3
severity
ISO
RGD
PMID:28302172
RGD:32716376
NCBI chr15:18,710,492...18,736,476
Ensembl chr15:18,710,492...18,736,473
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Fcer2
Fc fragment of IgE receptor II
severity
ISO
RGD
PMID:28302172
RGD:32716376
NCBI chr12:2,233,772...2,245,324
Ensembl chr12:2,233,778...2,245,324
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Flt1
Fms related receptor tyrosine kinase 1
severity
ISO
RGD
PMID:28302172
RGD:32716376
NCBI chr12:9,033,993...9,205,886
Ensembl chr12:9,034,308...9,205,905
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Galc
galactosylceramidase
ISO
associated with Guillain-Barre syndrome; protein:increased expression:serum (human) associated with Guillain-Barre syndrome; protein:increased expression:Cerebrospinal fluid, serum (human) protein:increased expression:serum (mouse)
RGD
PMID:27490360 , PMID:29301655 , PMID:30396892 , PMID:30396892 , PMID:12225900
RGD:38599168 , RGD:38599172 , RGD:38599171 , RGD:38599171 , RGD:38599169
NCBI chr 6:122,177,195...122,239,411
Ensembl chr 6:122,178,602...122,239,614
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Hdc
histidine decarboxylase
ISO
RGD
PMID:17158962
RGD:5143920
NCBI chr 3:119,057,524...119,075,599
Ensembl chr 3:119,057,517...119,075,619
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Htra3
HtrA serine peptidase 3
severity
ISO
RGD
PMID:28302172
RGD:32716376
NCBI chr14:80,248,140...80,276,534
Ensembl chr14:80,248,140...80,276,534
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Ifng
interferon gamma
ISO
mRNA:increased expression:lung:
RGD
PMID:7935058
RGD:10755754
NCBI chr 7:61,337,383...61,341,419
Ensembl chr 7:61,337,381...61,341,419
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Il13
interleukin 13
ISO
protein:increased expression:serum
RGD
PMID:20416219
RGD:4145765
NCBI chr10:38,982,909...38,985,466
Ensembl chr10:38,982,909...38,985,466
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Il22ra2
interleukin 22 receptor subunit alpha 2
severity
ISO
RGD
PMID:28302172
RGD:32716376
NCBI chr 1:15,084,136...15,107,423
Ensembl chr 1:15,093,599...15,106,954
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Inhba
inhibin subunit beta A
severity
ISO
RGD
PMID:28302172
RGD:32716376
NCBI chr17:51,894,869...51,919,998
Ensembl chr17:51,898,217...51,912,496
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Klrb1
killer cell lectin like receptor B1
severity
ISO
RGD
PMID:28302172
RGD:32716376
NCBI chr 4:162,774,050...162,792,804
Ensembl chr 4:162,774,109...162,792,804
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Ms4a1
membrane spanning 4-domains A1
severity
ISO
RGD
PMID:28302172
RGD:32716376
NCBI chr 1:227,429,241...227,441,492
Ensembl chr 1:227,429,596...227,441,442
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Pld4
phospholipase D family, member 4
severity
ISO
RGD
PMID:28302172
RGD:32716376
NCBI chr 6:137,323,713...137,331,231
Ensembl chr 6:137,323,713...137,331,231
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Spib
Spi-B transcription factor
severity
ISO
RGD
PMID:28302172
RGD:32716376
NCBI chr 1:100,531,538...100,537,397
Ensembl chr 1:100,531,457...100,537,377
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Tcf7
transcription factor 7
severity
ISO
RGD
PMID:28302172
RGD:32716376
NCBI chr10:37,616,033...37,646,027
Ensembl chr10:37,617,279...37,645,802
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Tcl1a
Tcl1 family Akt coactivator A
severity
ISO
RGD
PMID:28302172
RGD:32716376
NCBI chr 6:128,888,768...128,894,761
Ensembl chr 6:128,888,768...128,894,761
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Tnf
tumor necrosis factor
ISO
protein:increased expression:serum
RGD
PMID:20416219
RGD:4145765
NCBI chr20:5,189,382...5,192,000
Ensembl chr20:5,189,390...5,192,000
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Tnfrsf13c
TNF receptor superfamily member 13C
severity
ISO
RGD
PMID:28302172
RGD:32716376
NCBI chr 7:123,453,799...123,456,289
Ensembl chr 7:123,453,788...123,456,268
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Alox5
arachidonate 5-lipoxygenase
ISO
RGD
PMID:12773506
RGD:4890419
NCBI chr 4:148,398,004...148,446,308
Ensembl chr 4:148,398,892...148,446,303
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Aicda
activation-induced cytidine deaminase
ISO
RGD
PMID:26456931
RGD:11098923
NCBI chr 4:155,359,909...155,371,104
Ensembl chr 4:155,359,921...155,369,671
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Alox5
arachidonate 5-lipoxygenase
ISO
RGD
PMID:20231413
RGD:4890435
NCBI chr 4:148,398,004...148,446,308
Ensembl chr 4:148,398,892...148,446,303
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C3
complement C3
disease_progression
ISO IEP
protein:decreased expression:serum associated with Liver Cirrhosis, Experimental;protein:decreased expression:respiratory system fluid/secretion
RGD
PMID:20405 , PMID:17956621 , PMID:15972516
RGD:5130163 , RGD:5129523 , RGD:5129509
NCBI chr 9:9,721,137...9,747,084
Ensembl chr 9:9,721,105...9,747,167
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C5
complement C5
severity
ISO
RGD
PMID:7814608
RGD:5130159
NCBI chr 3:14,049,993...14,113,931 NCBI chr 3:14,206,466...14,229,141
Ensembl chr 3:14,049,995...14,229,080
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Ccl5
C-C motif chemokine ligand 5
susceptibility
ISO
RGD
PMID:16455992
RGD:4892130
NCBI chr10:70,739,764...70,744,303
Ensembl chr10:70,739,800...70,744,315
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Cd14
CD14 molecule
ISO
RGD
PMID:17185649
RGD:4144788
NCBI chr18:29,560,341...29,562,290
Ensembl chr18:29,560,365...29,562,153
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Chi3l1
chitinase 3 like 1
ISO
protein:increased secretion:serum (human)
RGD
PMID:10515841
RGD:4892626
NCBI chr13:51,022,844...51,030,797
Ensembl chr13:51,022,681...51,030,802
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Crhr1
corticotropin releasing hormone receptor 1
ISO
RGD
PMID:21774994
RGD:5147472
NCBI chr10:92,191,473...92,233,662
Ensembl chr10:92,191,718...92,232,645
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Crhr2
corticotropin releasing hormone receptor 2
ISO
RGD
PMID:21774994
RGD:5147472
NCBI chr 4:85,286,371...85,329,374
Ensembl chr 4:85,286,372...85,329,362
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Crp
C-reactive protein
disease_progression
ISO
RGD
PMID:21281676
RGD:5131293
NCBI chr13:91,080,448...91,081,358
Ensembl chr13:91,054,974...91,093,713
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Cxcl1
C-X-C motif chemokine ligand 1
ISO
protein:increased expression:respiratory system fluid/secretion
RGD
PMID:20958976
RGD:5134957
NCBI chr14:18,743,678...18,745,457
Ensembl chr14:18,743,685...18,745,457
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Cxcl9
C-X-C motif chemokine ligand 9
ISO
protein:increased expression:lung
RGD
PMID:20381636
RGD:5135285
NCBI chr14:17,228,832...17,233,743
Ensembl chr14:17,228,856...17,234,712
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Defb4
defensin beta 4
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:24894820
NCBI chr16:75,634,598...75,637,789
Ensembl chr16:75,634,598...75,637,789
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Hmox1
heme oxygenase 1
ISO
associated with influenza;protein:increased expression:lung
RGD
PMID:17348295
RGD:4145366
NCBI chr19:14,508,634...14,515,455
Ensembl chr19:14,508,616...14,515,456
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Hp
haptoglobin
ISO
RGD
PMID:19396720
RGD:5147385
NCBI chr19:42,096,255...42,100,805
Ensembl chr19:42,097,995...42,100,804
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Il15
interleukin 15
ISO
protein:increased expression:alveolar macrophage, bronchial epithelial cell
RGD
PMID:17611121
RGD:5000755
NCBI chr19:23,542,606...23,624,366
Ensembl chr19:23,542,889...23,554,594
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Il15ra
interleukin 15 receptor subunit alpha
ISO
RGD
PMID:17611121
RGD:5000755
NCBI chr17:70,451,861...70,481,838
Ensembl chr17:70,451,411...70,481,750
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Il17a
interleukin 17A
ISO
RGD
PMID:19995896
RGD:4888531
NCBI chr 9:26,841,299...26,844,786
Ensembl chr 9:26,841,299...26,844,786
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Il18
interleukin 18
ISO
RGD
PMID:15770015
RGD:4889960
NCBI chr 8:55,009,666...55,016,286
Ensembl chr 8:54,993,859...55,016,299
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Il6
interleukin 6
ISO
RGD
PMID:20643849
RGD:4143255
NCBI chr 4:3,043,231...3,047,807
Ensembl chr 4:3,043,231...3,047,807
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Lep
leptin
ISO
RGD
PMID:17822444
RGD:5128869
NCBI chr 4:56,337,695...56,351,818
Ensembl chr 4:56,337,695...56,351,818
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Lepr
leptin receptor
ISO
RGD
PMID:21148797
RGD:5128846
NCBI chr 5:120,503,475...120,682,281
Ensembl chr 5:120,564,645...120,682,221
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Mapk1
mitogen activated protein kinase 1
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:24894820
NCBI chr11:88,203,863...88,273,301
Ensembl chr11:88,211,599...88,273,254
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Mapk3
mitogen activated protein kinase 3
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:24894820
NCBI chr 1:198,192,773...198,198,975
Ensembl chr 1:198,192,773...198,198,975
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Masp2
mannan-binding lectin serine peptidase 2
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:12904520
NCBI chr 5:165,415,105...165,429,857
Ensembl chr 5:165,415,136...165,430,054
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Mbl2
mannose binding lectin 2
no_association
ISO
DNA:mutations:5' utr, exon:multiple (human) DNA:polymorphisms:5' utr, exon:multiple (human)
RGD
PMID:18641104 , PMID:12047967
RGD:4889477 , RGD:4889478
NCBI chr 1:248,435,069...248,442,669
Ensembl chr 1:248,723,397...248,729,962
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Nos2
nitric oxide synthase 2
ISO
RGD
PMID:17056580
RGD:4891950
NCBI chr10:66,188,290...66,221,621
Ensembl chr10:66,189,786...66,313,190
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Sftpd
surfactant protein D
severity
ISO
RGD
PMID:16255775
RGD:4143519
NCBI chr16:18,753,535...18,766,100
Ensembl chr16:18,745,458...18,766,174
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Sirt1
sirtuin 1
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:24894820
NCBI chr20:26,831,971...26,851,587
Ensembl chr20:26,833,357...26,852,199
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Sting1
stimulator of interferon response cGAMP interactor 1
ISO
RGD
PMID:29263110
RGD:39128230
NCBI chr18:28,529,537...28,535,828
Ensembl chr18:28,529,576...28,535,828
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Tlr2
toll-like receptor 2
ISO
RGD
PMID:19956717
RGD:4145321
NCBI chr 2:182,840,171...182,846,061
Ensembl chr 2:182,840,727...182,846,061
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Tnf
tumor necrosis factor
ISO
associated with influenza;protein:increased expression:lung
RGD
PMID:9032201 , PMID:17348295
RGD:4143479 , RGD:4145366
NCBI chr20:5,189,382...5,192,000
Ensembl chr20:5,189,390...5,192,000
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Azin1
antizyme inhibitor 1
IEP
mRNA:increased expression:alveolar macrophage
RGD
PMID:19158080
RGD:14700806
NCBI chr 7:77,345,646...77,372,398
Ensembl chr 7:77,345,646...77,372,398
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C3
complement C3
IEP
RGD
PMID:17169032
RGD:5129525
NCBI chr 9:9,721,137...9,747,084
Ensembl chr 9:9,721,105...9,747,167
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Ccl2
C-C motif chemokine ligand 2
ISO
protein:increased expression:respiratory system fluid/secretion
RGD
PMID:20618689
RGD:4891428
NCBI chr10:69,412,065...69,413,863
Ensembl chr10:69,412,017...69,413,870
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Cd40
CD40 molecule
treatment
ISO
RGD
PMID:10968950
RGD:8547797
NCBI chr 3:161,519,789...161,534,943
Ensembl chr 3:161,519,743...161,534,704
G
Csf2
colony stimulating factor 2
IEP
protein:increased expression:respiratory system fluid/secretion
RGD
PMID:19487471
RGD:5131475
NCBI chr10:39,602,089...39,604,070
Ensembl chr10:39,602,089...39,604,070
G
Il23a
interleukin 23 subunit alpha
ISO
RGD
PMID:17403873
RGD:39458043
NCBI chr 7:2,710,609...2,712,723
Ensembl chr 7:2,710,609...2,712,723
G
Il33
interleukin 33
treatment
ISO
RGD
PMID:21220696
RGD:40400892
NCBI chr 1:248,112,611...248,147,030
Ensembl chr 1:248,132,090...248,147,029
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Muc1
mucin 1, cell surface associated
ISO
protein:increased expression:serum
RGD
PMID:9617869
RGD:5131424
NCBI chr 2:188,543,137...188,547,874
Ensembl chr 2:188,543,137...188,547,874
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Nos2
nitric oxide synthase 2
IEP
mRNA:increased expression:alveolar macrophage protein:decreased dimerization:alveolar macrophage
RGD
PMID:20377877 , PMID:20558778
RGD:4144112 , RGD:4891486
NCBI chr10:66,188,290...66,221,621
Ensembl chr10:66,189,786...66,313,190
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RT1-Bb
RT1 class II, locus Bb
IEP
RGD
PMID:20377877
RGD:4144112
NCBI chr20:4,043,726...4,049,367
Ensembl chr20:4,039,413...4,049,711
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Sftpa1
surfactant protein A1
ISO
protein:increased expression:lung
RGD
PMID:11385364
RGD:4143431
NCBI chr16:18,716,019...18,719,404
Ensembl chr16:18,716,019...18,719,403
G
Sftpb
surfactant protein B
ISO
protein:decreased expression:lung
RGD
PMID:11385364
RGD:4143431
NCBI chr 4:100,166,855...100,175,941
Ensembl chr 4:100,166,863...100,175,938
G
Sftpc
surfactant protein C
ISO
protein:decreased expression:lung
RGD
PMID:11385364
RGD:4143431
NCBI chr15:52,211,538...52,214,480
Ensembl chr15:52,211,544...52,214,616
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Sftpd
surfactant protein D
ISO
protein:increased expression:lung
RGD
PMID:11385364
RGD:4143431
NCBI chr16:18,753,535...18,766,100
Ensembl chr16:18,745,458...18,766,174
G
Tlr2
toll-like receptor 2
ISO
RGD
PMID:18400546
RGD:4145341
NCBI chr 2:182,840,171...182,846,061
Ensembl chr 2:182,840,727...182,846,061
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Gc
GC, vitamin D binding protein
ISO
protein:increased expression:bronchoalveolar fluid:
RGD
PMID:21136918
RGD:5509873
NCBI chr14:20,267,023...20,302,577
Ensembl chr14:20,266,891...20,302,581
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Akt1
AKT serine/threonine kinase 1
treatment
ISO
RGD
PMID:23613163
RGD:38676477
NCBI chr 6:137,218,398...137,239,970
Ensembl chr 6:137,218,376...137,236,258
G
Cd86
CD86 molecule
ISO
protein:decreased expression:spleen, plasmacytoid dendritic cell (mouse)
RGD
PMID:20949109
RGD:4892562
NCBI chr11:67,060,305...67,117,990
Ensembl chr11:67,082,193...67,118,795
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Cftr
CF transmembrane conductance regulator
ISO
RGD
PMID:28289144
RGD:36049750
NCBI chr 4:42,693,263...42,860,679
Ensembl chr 4:42,692,836...42,860,676
G
Csf3
colony stimulating factor 3
treatment
ISO
RGD
PMID:10228098
RGD:11039478
NCBI chr10:86,616,785...86,619,160
Ensembl chr10:86,616,785...86,619,157
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Fn1
fibronectin 1
IDA
RGD
PMID:12065530
RGD:7205474
NCBI chr 9:78,900,111...78,969,018
Ensembl chr 9:78,900,103...78,969,078
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Ifnar1
interferon alpha and beta receptor subunit 1
susceptibility
ISO
RGD
PMID:19603548 , PMID:19603548
RGD:5490273 , RGD:5490273
NCBI chr11:31,640,407...31,666,839
Ensembl chr11:31,640,407...31,664,061
G
Il10
interleukin 10
ISO
mRNA, protein:increased expression:lung
RGD
PMID:22940620
RGD:7364825
NCBI chr13:47,738,933...47,743,392
Ensembl chr13:47,739,526...47,743,392
G
Il15
interleukin 15
ISO
RGD
PMID:18390740
RGD:4996474
NCBI chr19:23,542,606...23,624,366
Ensembl chr19:23,542,889...23,554,594
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Il1b
interleukin 1 beta
ISO
RGD
PMID:20065029
RGD:4142828
NCBI chr 3:121,876,256...121,882,637
Ensembl chr 3:121,876,263...121,882,726
G
Il33
interleukin 33
ISO
mRNA:increased expression:lung:
RGD
PMID:28401938
RGD:40400699
NCBI chr 1:248,112,611...248,147,030
Ensembl chr 1:248,132,090...248,147,029
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Nod2
nucleotide-binding oligomerization domain containing 2
ISO
RGD
PMID:20493961
RGD:5131444
NCBI chr19:19,342,061...19,389,366
Ensembl chr19:19,332,594...19,377,492
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Prkn
parkin RBR E3 ubiquitin protein ligase
ISO
protein:increased expression:lung (mouse)
RGD
PMID:28663335
RGD:13432209
NCBI chr 1:48,880,015...50,069,998
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Ptpn11
protein tyrosine phosphatase, non-receptor type 11
severity
ISO
mRNA:increased expression:lung associated with influenza
RGD
PMID:31782850 , PMID:31782850
RGD:39131288 , RGD:39131288
NCBI chr12:40,895,515...40,955,999
Ensembl chr12:40,895,515...40,955,999
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Clec4m
C-type lectin domain family 4 member M
severity
ISO
RGD
PMID:16134084
RGD:39938986
NCBI chr12:2,817,633...2,826,303
Ensembl chr12:2,816,065...2,826,378
G
Ido1
indoleamine 2,3-dioxygenase 1
ISO
mRNA:increased expression:lung (mouse)
RGD
PMID:20385761
RGD:39938865
NCBI chr16:72,216,326...72,228,098
Ensembl chr16:72,216,326...72,228,098
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Ifng
interferon gamma
ISO
protein:increased expression:lung,natural killer cell (mouse)
RGD
PMID:21887255
RGD:40818252
NCBI chr 7:61,337,383...61,341,419
Ensembl chr 7:61,337,381...61,341,419
G
Il6
interleukin 6
ISO
protein:increased expression:lung,natural killer cell (mouse)
RGD
PMID:21887255
RGD:40818252
NCBI chr 4:3,043,231...3,047,807
Ensembl chr 4:3,043,231...3,047,807
G
Irak3
interleukin-1 receptor-associated kinase 3
severity
ISO
RGD
PMID:22492852
RGD:35316076
NCBI chr 7:64,922,830...64,982,224
Ensembl chr 7:64,923,615...64,982,281
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Lamp1
lysosomal-associated membrane protein 1
ISO
protein:increased expression:lung, natural killer cell (mouse)
RGD
PMID:21887255
RGD:40818252
NCBI chr16:81,689,576...81,714,341
Ensembl chr16:81,689,335...81,714,419
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Ncr1
natural cytotoxicity triggering receptor 1
severity
ISO
RGD
PMID:21887255
RGD:40818252
NCBI chr 1:73,178,917...73,226,504
Ensembl chr 1:73,179,013...73,226,777
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Pdcd1
programmed cell death 1
treatment
ISO
RGD
PMID:25624454
RGD:40818422
NCBI chr 9:101,305,742...101,319,937
Ensembl chr 9:101,307,764...101,319,845
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Pik3cd
phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit delta
treatment
ISO
associated with immunodeficiency 14
RGD
PMID:30093657
RGD:40890269
NCBI chr 5:166,602,053...166,628,028
Ensembl chr 5:166,602,053...166,628,028
G
Pik3cg
phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma
severity
ISO
RGD
PMID:17322108
RGD:38599154
NCBI chr 6:51,465,696...51,501,234
Ensembl chr 6:51,465,908...51,498,337
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Tnf
tumor necrosis factor
ISO
protein:increased expression:lung,natural killer cell (mouse)
RGD
PMID:21887255
RGD:40818252
NCBI chr20:5,189,382...5,192,000
Ensembl chr20:5,189,390...5,192,000
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Ace
angiotensin I converting enzyme
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:15381116
NCBI chr10:94,170,766...94,213,831
Ensembl chr10:94,170,766...94,187,822
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Ccl11
C-C motif chemokine ligand 11
ISO
RGD
PMID:20644177
RGD:4140459
NCBI chr10:69,434,965...69,439,566
Ensembl chr10:69,434,941...69,439,575
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Ccl2
C-C motif chemokine ligand 2
ISO
RGD
PMID:19617401
RGD:4891451
NCBI chr10:69,412,065...69,413,863
Ensembl chr10:69,412,017...69,413,870
G
Ccl3
C-C motif chemokine ligand 3
ISO
mRNA:increased expression:bronchoalveolar lavage (human)
RGD
PMID:32407669
RGD:30296672
NCBI chr10:70,869,516...70,871,066
Ensembl chr10:70,869,513...70,871,066
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Ccl4
C-C motif chemokine ligand 4
ISO
RGD
PMID:20957032
RGD:5130904
NCBI chr10:70,870,926...70,886,357
Ensembl chr10:70,884,531...70,886,355
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Ccr1
C-C motif chemokine receptor 1
ISO
RGD
PMID:15254170
RGD:5688163
NCBI chr 8:132,996,646...133,002,201
Ensembl chr 8:132,996,649...133,002,201
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Cxcl1
C-X-C motif chemokine ligand 1
IEP
protein:increased expression:respiratory system fluid/secretion
RGD
PMID:19671179
RGD:5134975
NCBI chr14:18,743,678...18,745,457
Ensembl chr14:18,743,685...18,745,457
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Cxcl10
C-X-C motif chemokine ligand 10
ISO
RGD
PMID:17655904
RGD:5135437
NCBI chr14:17,210,733...17,212,930
Ensembl chr14:17,210,733...17,212,930
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Cxcl16
C-X-C motif chemokine ligand 16
ISO
mRNA:decreased expression:bronchoalveolar lavage (human)
RGD
PMID:32407669
RGD:30296672
NCBI chr10:57,060,005...57,064,600
Ensembl chr10:57,060,007...57,064,600
G
Cxcl2
C-X-C motif chemokine ligand 2
IEP
protein:increased expression:respiratory system fluid/secretion
RGD
PMID:19671179
RGD:5134975
NCBI chr14:18,731,346...18,733,391
Ensembl chr14:18,731,378...18,733,391
G
Cxcl9
C-X-C motif chemokine ligand 9
ISO
RGD
PMID:17655904
RGD:5135437
NCBI chr14:17,228,832...17,233,743
Ensembl chr14:17,228,856...17,234,712
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Hmox1
heme oxygenase 1
ISO
mRNA:increased expression:lung
RGD
PMID:8843786
RGD:4145417
NCBI chr19:14,508,634...14,515,455
Ensembl chr19:14,508,616...14,515,456
G
Ifnar1
interferon alpha and beta receptor subunit 1
disease_progression
ISO
H1N1 virus susceptibility
RGD
PMID:21383977 , PMID:21383977
RGD:5490272 , RGD:5490272
NCBI chr11:31,640,407...31,666,839
Ensembl chr11:31,640,407...31,664,061
G
Il10
interleukin 10
treatment
ISO
RGD
PMID:25219125
RGD:10450576
NCBI chr13:47,738,933...47,743,392
Ensembl chr13:47,739,526...47,743,392
G
Il15
interleukin 15
ISO
RGD
PMID:20335267
RGD:4892670
NCBI chr19:23,542,606...23,624,366
Ensembl chr19:23,542,889...23,554,594
G
Il17ra
interleukin 17 receptor A
ISO
mRNA:decreased expression:bronchoalveolar lavage (human)
RGD
PMID:32407669
RGD:30296672
NCBI chr 4:152,995,865...153,018,394
Ensembl chr 4:152,995,865...153,018,394
G
Il1b
interleukin 1 beta
ISO
mRNA:increased expression:bronchoalveolar lavage (human)
RGD
PMID:32407669
RGD:30296672
NCBI chr 3:121,876,256...121,882,637
Ensembl chr 3:121,876,263...121,882,726
G
Il1rn
interleukin 1 receptor antagonist
ISO
mRNA:increased expression:bronchoalveolar lavage (human)
RGD
PMID:32407669
RGD:30296672
NCBI chr 3:1,449,778...1,468,624
Ensembl chr 3:1,452,644...1,468,614
G
Il4r
interleukin 4 receptor
ISO
mRNA:decreased expression:bronchoalveolar lavage (human)
RGD
PMID:32407669
RGD:30296672
NCBI chr 1:196,942,343...196,967,221
Ensembl chr 1:196,942,364...196,967,220
G
Mif
macrophage migration inhibitory factor
ISO
RGD
PMID:19941385
RGD:4891005
NCBI chr20:13,715,219...13,732,980
Ensembl chr20:13,732,198...13,732,859
G
Tlr9
toll-like receptor 9
ISO
DNA:snp:promoter:g.-1237T>C rs5743836 (human)
RGD
PMID:19539691
RGD:5130766
NCBI chr 8:114,916,122...114,920,171
Ensembl chr 8:114,916,122...114,920,171
G
Tnf
tumor necrosis factor
treatment
ISO
RGD
PMID:25219125
RGD:10450576
NCBI chr20:5,189,382...5,192,000
Ensembl chr20:5,189,390...5,192,000
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