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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.
Term:stomach carcinoma
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Accession:DOID:5517 term browser browse the term
Definition:A stomach cancer that is located_in the stomach. (DO)
Synonyms:exact_synonym: carcinoma of stomach;   gastric carcinoma
 narrow_synonym: gastric non-cardia carcinoma
 xref: EFO:0000178;   EFO:0008502;   NCI:C24225;   NCI:C4911
For additional species annotation, visit the Alliance of Genome Resources.


show annotations for term's descendants           Sort by:
stomach carcinoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arid1a AT-rich interaction domain 1A disease_progression ISO protein:decreased expression:stomach (human) RGD PMID:24767857 RGD:125097484 NCBI chr 5:145,908,173...145,981,552
Ensembl chr 5:145,908,181...145,985,564 		JBrowse link
G Atp6v1c1 ATPase H+ transporting V1 subunit C1 ISO RGD PMID:23722107 RGD:14700649 NCBI chr 7:69,834,464...69,872,278
Ensembl chr 7:69,834,463...69,872,278 		JBrowse link
G Azgp1 alpha-2-glycoprotein 1, zinc-binding disease_progression ISO RGD PMID:23935945 RGD:153350143 NCBI chr12:16,930,990...16,939,333
Ensembl chr12:16,931,024...16,939,091 		JBrowse link
G Bcl2l10 Bcl2-like 10 ISO protein:decreased expression:stomach: RGD PMID:21171085 PMID:21171085 RGD:14392807, RGD:14392807 NCBI chr 8:76,107,326...76,113,373
Ensembl chr 8:76,107,326...76,113,367 		JBrowse link
G Bcor BCL6 co-repressor disease_progression ISO RGD PMID:27313181 RGD:150340706 NCBI chr  X:10,609,756...10,729,613
Ensembl chr  X:10,687,732...10,729,613 		JBrowse link
G Birc5 baculoviral IAP repeat-containing 5 IEP protein:increased expression:stomach RGD PMID:12854136 RGD:2293138 NCBI chr10:103,072,530...103,081,382
Ensembl chr10:103,073,408...103,081,380 		JBrowse link
G Brca1 BRCA1, DNA repair associated disease_progression ISO RGD PMID:23569343 RGD:9589059 NCBI chr10:86,417,441...86,477,762
Ensembl chr10:86,418,000...86,477,304 		JBrowse link
G Cblb Cbl proto-oncogene B disease_progression
severity		 ISO RGD PMID:28334634 PMID:20038312 RGD:150540337, RGD:150540338 NCBI chr11:48,589,878...48,756,940
Ensembl chr11:48,592,703...48,756,839 		JBrowse link
G Cbx7 chromobox 7 ISO mRNA:decreased expression:stomach: RGD PMID:22041561 RGD:9587355 NCBI chr 7:111,460,656...111,479,231
Ensembl chr 7:111,460,656...111,477,973 		JBrowse link
G Ccnd2 cyclin D2 severity
disease_progression		 ISO RGD PMID:14612939 PMID:9778110 PMID:14612939 RGD:151665142, RGD:151665349, RGD:151665142 NCBI chr 4:159,966,883...159,989,261
Ensembl chr 4:159,962,363...159,989,495 		JBrowse link
G Cdkn1a cyclin-dependent kinase inhibitor 1A disease_progression ISO RGD PMID:11745255 RGD:8662389 NCBI chr20:7,149,177...7,159,727
Ensembl chr20:7,149,217...7,159,585 		JBrowse link
G Erbb2 erb-b2 receptor tyrosine kinase 2 disease_progression ISO RGD PMID:21709195 RGD:126781768 NCBI chr10:83,411,197...83,435,078
Ensembl chr10:83,411,313...83,435,078 		JBrowse link
G Erbb3 erb-b2 receptor tyrosine kinase 3 disease_progression ISO RGD PMID:21709195 RGD:126781768 NCBI chr 7:994,549...1,015,876
Ensembl chr 7:996,225...1,015,525 		JBrowse link
G Erbb4 erb-b2 receptor tyrosine kinase 4 disease_progression ISO RGD PMID:21709195 RGD:126781768 NCBI chr 9:69,523,733...70,596,743
Ensembl chr 9:69,531,481...70,596,595 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 treatment ISO human cell line in a mouse model RGD PMID:31255687 RGD:155663557 NCBI chr 1:184,745,418...184,850,655
Ensembl chr 1:184,745,420...184,850,626 		JBrowse link
G Gpx1 glutathione peroxidase 1 exacerbates ISO protein:decreased expression:stomach (human) RGD PMID:8001233 RGD:152023661 NCBI chr 8:109,026,905...109,028,031
Ensembl chr 8:109,026,905...109,028,024 		JBrowse link
G Grb7 growth factor receptor bound protein 7 ISO mRNA:increased expression:stomach (human) RGD PMID:9125150 RGD:151347662 NCBI chr10:83,443,387...83,453,057
Ensembl chr10:83,444,004...83,453,052 		JBrowse link
G Kdm4a lysine demethylase 4A severity ISO mRNA, protein:increased expression:gastric mucosa (human) RGD PMID:24802408 RGD:9587437 NCBI chr 5:131,672,754...131,719,534
Ensembl chr 5:131,672,754...131,719,501 		JBrowse link
G Kdm4c lysine demethylase 4C severity ISO protein:increased expression:stomach (human) RGD PMID:24418035 RGD:9588260 NCBI chr 5:88,100,710...88,306,821
Ensembl chr 5:88,100,733...88,306,818 		JBrowse link
G Kdm5a lysine demethylase 5A ISO mRNA:increased expression:stomach (human) RGD PMID:23794145 RGD:9588529 NCBI chr 4:153,565,909...153,643,912
Ensembl chr 4:153,565,846...153,642,422 		JBrowse link
G Kmt2c lysine methyltransferase 2C severity ISO protein:decreased expression:stomach (human) RGD PMID:25222251 RGD:9588234 NCBI chr 4:9,620,638...9,834,787
Ensembl chr 4:9,609,627...9,833,539 		JBrowse link
G Kras KRAS proto-oncogene, GTPase ISO gastric cancer, OMIM:137215 RGD PMID:7773929 RGD:1600468 NCBI chr 4:178,185,418...178,218,484 JBrowse link
G Letmd1 LETM1 domain containing 1 ISO mRNA, protein:increased expression:stomach RGD PMID:12879013 RGD:2314918 NCBI chr 7:131,584,241...131,597,797
Ensembl chr 7:131,584,259...131,597,796 		JBrowse link
G Mdc1 mediator of DNA damage checkpoint 1 severity ISO protein:decreased expression:stomach (human) RGD PMID:23569343 RGD:9589059 NCBI chr20:2,893,693...2,912,394
Ensembl chr20:2,895,505...2,910,240 		JBrowse link
G Mmp1 matrix metallopeptidase 1 ISO mRNA:increased expression:gastric mucosa (human) RGD PMID:20944126 RGD:7206857 NCBI chr 8:4,658,588...4,679,099
Ensembl chr 8:4,658,588...4,679,097 		JBrowse link
G Mmp2 matrix metallopeptidase 2 IEP mRNA, protein:increased expression, increased activity:stomach RGD PMID:20434464 RGD:2325777 NCBI chr19:14,154,657...14,182,870
Ensembl chr19:14,154,657...14,182,870 		JBrowse link
G Mmp9 matrix metallopeptidase 9 IEP mRNA, protein:increased expression, increased activity:stomach RGD PMID:20434464 RGD:2325777 NCBI chr 3:153,684,158...153,692,118
Ensembl chr 3:153,683,858...153,692,120 		JBrowse link
G Mre11 MRE11 homolog, double strand break repair nuclease ISO DNA:deletions:intron:IVS4_delT (human) RGD PMID:15319296 RGD:2317738 NCBI chr 8:11,618,876...11,680,451
Ensembl chr 8:11,632,354...11,678,279 		JBrowse link
G Mutyh mutY DNA glycosylase ISO RGD PMID:15273732 RGD:1600201 NCBI chr 5:130,274,034...130,286,149
Ensembl chr 5:130,274,122...130,286,146 		JBrowse link
G Parp1 poly (ADP-ribose) polymerase 1 susceptibility ISO DNA:snp:cds:p.V762A rs1136410 (human) RGD PMID:18716896 RGD:5683907 NCBI chr13:92,307,593...92,339,406
Ensembl chr13:92,307,586...92,339,404 		JBrowse link
G Rnf43 ring finger protein 43 exacerbates ISO protein:decreased expression:stomach (human)
DNA:mutations:multiple: (human)		 RGD PMID:26184844 PMID:24816253 RGD:11086719, RGD:151665118 NCBI chr10:72,461,508...72,537,301
Ensembl chr10:72,464,348...72,536,977 		JBrowse link
G Slc3a2 solute carrier family 3 member 2 disease_progression ISO mRNA:increased expression:stomach (human) RGD PMID:29179459 RGD:152995459 NCBI chr 1:205,604,468...205,618,931
Ensembl chr 1:205,604,468...205,618,931 		JBrowse link
G Sparc secreted protein acidic and cysteine rich IEP mRNA:increased expression:stomach mucosa RGD PMID:12359048 RGD:2300058 NCBI chr10:39,516,394...39,538,252
Ensembl chr10:39,516,406...39,538,396 		JBrowse link
G Spint1 serine peptidase inhibitor, Kunitz type 1 severity ISO mRNA:decreased expression:stomach (human) RGD PMID:16273651 RGD:1581312 NCBI chr 3:106,231,082...106,244,121
Ensembl chr 3:106,231,444...106,244,119 		JBrowse link
G Tnfaip3 TNF alpha induced protein 3 ISO mRNA,protein:increased expression:stomach (human) RGD PMID:31153693 RGD:151347607 NCBI chr 1:13,709,211...13,724,291
Ensembl chr 1:13,709,206...13,725,282 		JBrowse link
G Xpo1 exportin 1 exacerbates ISO protein:increased expression:stomach (human) RGD PMID:24026662 RGD:151667437 NCBI chr14:97,233,282...97,275,536
Ensembl chr14:97,233,270...97,275,498 		JBrowse link
G Xrcc1 X-ray repair cross complementing 1 onset ISO DNA:SNP::p.R194W (human) RGD PMID:20863780 RGD:150530627 NCBI chr 1:80,140,495...80,168,705
Ensembl chr 1:80,141,207...80,168,701 		JBrowse link
gastric adenocarcinoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca13 ATP binding cassette subfamily A member 13 susceptibility ISO DNA:amplification:cds: (human) RGD PMID:27366209 RGD:152995256 NCBI chr14:83,873,397...84,376,138
Ensembl chr14:83,873,940...84,375,075 		JBrowse link
G Acvr1 activin A receptor type 1 ISO ClinVar Annotator: match by term: Gastric adenocarcinoma ClinVar PMID:25326637 PMID:26619011 NCBI chr 3:42,978,558...43,097,892
Ensembl chr 3:42,978,561...43,098,241 		JBrowse link
G Akt1 AKT serine/threonine kinase 1 ISO ClinVar Annotator: match by term: Adenocarcinoma of stomach ClinVar PMID:17611497 PMID:18256540 PMID:18392055 PMID:18504432 PMID:18611285 More... NCBI chr 6:131,713,716...131,735,319
Ensembl chr 6:131,713,720...131,733,921 		JBrowse link
G Alx4 ALX homeobox 4 severity ISO RGD PMID:27895854 RGD:153344544 NCBI chr 3:79,611,682...79,648,260
Ensembl chr 3:79,611,719...79,648,260 		JBrowse link
G Amigo2 adhesion molecule with Ig like domain 2 ISO mRNA:increased expression:serosa of stomach (human) RGD PMID:15107827 RGD:13838842 NCBI chr 7:128,391,493...128,394,589
Ensembl chr 7:128,390,412...128,394,695 		JBrowse link
G Apoc1 apolipoprotein C1 ISO protein:decreased expression:serum RGD PMID:21267442 RGD:153344621 NCBI chr 1:79,347,057...79,350,340
Ensembl chr 1:79,346,136...79,350,375 		JBrowse link
G Apoc3 apolipoprotein C3 disease_progression ISO protein:decreased expression:serum RGD PMID:21267442 PMID:27002935 RGD:153344621, RGD:153350083 NCBI chr 8:46,531,478...46,533,658
Ensembl chr 8:46,531,478...46,533,583 		JBrowse link
G Arid1a AT-rich interaction domain 1A exacerbates
disease_progression
severity		 ISO mRNA, protein:decreased expression:mucosa of stomach (human)
protein:decreased expression:stomach (human)
mRNA:decreased expression:mucosa of stomach (human)		 RGD PMID:24293408 PMID:22808142 PMID:25717252 RGD:125097521, RGD:125097488, RGD:126848753 NCBI chr 5:145,908,173...145,981,552
Ensembl chr 5:145,908,181...145,985,564 		JBrowse link
G B2m beta-2 microglobulin ISO ClinVar Annotator: match by term: Adenocarcinoma of stomach ClinVar PMID:26619011 NCBI chr 3:109,095,740...109,101,764
Ensembl chr 3:109,095,729...109,101,766 		JBrowse link
G Birc2 baculoviral IAP repeat-containing 2 exacerbates ISO mRNA:increased expression:stomach (human) RGD PMID:31964418 RGD:153344516 NCBI chr 8:4,968,856...4,989,325
Ensembl chr 8:4,968,842...4,988,732 		JBrowse link
G Birc3 baculoviral IAP repeat-containing 3 disease_progression ISO mRNA:increased expression:stomach (human) RGD PMID:31964418 RGD:153344516 NCBI chr 8:5,000,844...5,028,470
Ensembl chr 8:5,000,845...5,015,802 		JBrowse link
G Birc7 baculoviral IAP repeat-containing 7 exacerbates ISO mRNA:increased expression:stomach (human) RGD PMID:31964418 RGD:153344516 NCBI chr 3:168,047,824...168,052,606
Ensembl chr 3:168,047,824...168,052,606 		JBrowse link
G Braf B-Raf proto-oncogene, serine/threonine kinase ISO ClinVar Annotator: match by term: Adenocarcinoma of stomach ClinVar PMID:12068308 PMID:12198537 PMID:12960123 PMID:14679157 PMID:15035987 More... NCBI chr 4:68,375,484...68,510,652
Ensembl chr 4:68,384,649...68,510,463 		JBrowse link
G Calr calreticulin ameliorates ISO human cell line and construct in a mouse model RGD PMID:25619450 RGD:150521705 NCBI chr19:23,308,525...23,313,420
Ensembl chr19:23,308,351...23,313,414 		JBrowse link
G Cat catalase ISO protein:decreased expression:blood serum (human) RGD PMID:31396300 RGD:126908003 NCBI chr 3:89,842,393...89,874,577
Ensembl chr 3:89,842,399...89,874,478 		JBrowse link
G Cd44 CD44 molecule disease_progression ISO mRNA, protein:splice variant, increased expression:stomach RGD PMID:16425351 RGD:2289356 NCBI chr 3:89,155,850...89,244,615
Ensembl chr 3:89,157,058...89,244,620 		JBrowse link
G Cdc73 cell division cycle 73 exacerbates ISO protein:decreased expression:stomach (human) RGD PMID:18080135 RGD:150539445 NCBI chr13:55,357,226...55,449,690
Ensembl chr13:55,357,226...55,449,656 		JBrowse link
G Cdh1 cadherin 1 severity ISO mRNA:decreased expression:mucosa of stomach (human)
ClinVar Annotator: match by term: Adenocarcinoma of stomach		 RGD
ClinVar		 PMID:10896919 PMID:11968083 PMID:12588804 PMID:12944922 PMID:14500541 More... RGD:125097521 NCBI chr19:34,492,371...34,561,775
Ensembl chr19:34,492,371...34,561,775 		JBrowse link
G Cdk12 cyclin-dependent kinase 12 exacerbates ISO protein:increased expression:stomach (human) RGD PMID:31523177 RGD:151361173 NCBI chr10:83,201,177...83,256,906
Ensembl chr10:83,201,211...83,280,888
Ensembl chr10:83,201,211...83,280,888 		JBrowse link
G Cdkn2a cyclin-dependent kinase inhibitor 2A ISO ClinVar Annotator: match by term: Adenocarcinoma of stomach
ClinVar Annotator: match by term: Adenocarcinoma of stomach | ClinVar Annotator: match by term: Gastric adenocarcinoma		 ClinVar PMID:7780957 PMID:8521414 PMID:8573142 PMID:8595405 PMID:8723678 More... NCBI chr 5:103,984,949...103,992,143
Ensembl chr 5:103,984,949...104,003,149 		JBrowse link
G Cnot9 CCR4-NOT transcription complex subunit 9 ISO ClinVar Annotator: match by term: Gastric adenocarcinoma ClinVar PMID:26619011 NCBI chr 9:76,084,269...76,109,111
Ensembl chr 9:76,084,334...76,109,100 		JBrowse link
G Crebbp CREB binding protein ISO ClinVar Annotator: match by term: Adenocarcinoma of stomach ClinVar PMID:21390126 PMID:21680795 PMID:21796119 PMID:22832583 PMID:23334668 More... NCBI chr10:11,335,551...11,461,888
Ensembl chr10:11,335,953...11,461,888 		JBrowse link
G Ctnnb1 catenin beta 1 ISO ClinVar Annotator: match by term: Adenocarcinoma of stomach | ClinVar Annotator: match by term: Gastric adenocarcinoma ClinVar PMID:9065402 PMID:9065403 PMID:9294210 PMID:9927029 PMID:10027390 More... NCBI chr 8:120,640,008...120,667,110
Ensembl chr 8:120,639,995...120,667,111 		JBrowse link
G Erbb2 erb-b2 receptor tyrosine kinase 2 ISO ClinVar Annotator: match by term: Adenocarcinoma of stomach | ClinVar Annotator: match by term: Gastric adenocarcinoma ClinVar PMID:15457249 PMID:16397024 PMID:16988931 PMID:18339846 PMID:18413839 More... NCBI chr10:83,411,197...83,435,078
Ensembl chr10:83,411,313...83,435,078 		JBrowse link
G Erbb3 erb-b2 receptor tyrosine kinase 3 ISO ClinVar Annotator: match by term: Adenocarcinoma of stomach | ClinVar Annotator: match by term: Gastric adenocarcinoma ClinVar PMID:26619011 NCBI chr 7:994,549...1,015,876
Ensembl chr 7:996,225...1,015,525 		JBrowse link
G Fbxw7 F-box and WD repeat domain containing 7 ISO ClinVar Annotator: match by term: Adenocarcinoma of stomach ClinVar PMID:25741868 PMID:26619011 NCBI chr 2:170,149,706...170,311,536
Ensembl chr 2:170,149,694...170,309,941 		JBrowse link
G Fgfr1 Fibroblast growth factor receptor 1 ISO ClinVar Annotator: match by term: Gastric adenocarcinoma ClinVar PMID:10766980 PMID:23819449 PMID:25741868 PMID:26619011 PMID:26822237 More... NCBI chr16:66,491,930...66,547,161
Ensembl chr16:66,494,042...66,547,350 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 ISO ClinVar Annotator: match by term: Gastric adenocarcinoma ClinVar PMID:7719344 PMID:8651276 PMID:9002682 PMID:9462761 PMID:9719378 More... NCBI chr 1:184,745,418...184,850,655
Ensembl chr 1:184,745,420...184,850,626 		JBrowse link
G Gnas GNAS complex locus ISO ClinVar Annotator: match by term: Adenocarcinoma of stomach ClinVar PMID:1517386 PMID:1594625 PMID:1944469 PMID:2549426 PMID:3720010 More... NCBI chr 3:163,071,003...163,136,350
Ensembl chr 3:163,071,417...163,127,262
Ensembl chr 3:163,071,417...163,127,262 		JBrowse link
G Gpx1 glutathione peroxidase 1 exacerbates
susceptibility		 ISO protein:decreased expression:mucosa of stomach (human)
mRNA:decreased expression:stomach, erythrocyte, lymphocyte (human)		 RGD PMID:24228025 PMID:27957666 RGD:152995446, RGD:152998894 NCBI chr 8:109,026,905...109,028,031
Ensembl chr 8:109,026,905...109,028,024 		JBrowse link
G Gpx4 glutathione peroxidase 4 susceptibility ISO mRNA:decreased expression:stomach, erythrocyte, lymphocyte (human) RGD PMID:27957666 RGD:152998894 NCBI chr 7:9,650,186...9,652,982
Ensembl chr 7:9,650,185...9,652,982 		JBrowse link
G Hnrnpa0 heterogeneous nuclear ribonucleoprotein A0 severity ISO mRNA:decreased expression:gastric adenocarcinoma (human) RGD PMID:23007704 RGD:9854641 NCBI chr17:6,507,728...6,510,385
Ensembl chr17:6,507,275...6,509,375 		JBrowse link
G Hras HRas proto-oncogene, GTPase ISO ClinVar Annotator: match by term: Adenocarcinoma of stomach | ClinVar Annotator: match by term: Gastric adenocarcinoma ClinVar PMID:11150980 PMID:12835555 PMID:16155195 PMID:16170316 PMID:16329078 More... NCBI chr 1:196,290,127...196,299,823
Ensembl chr 1:196,296,263...196,300,615 		JBrowse link
G Il1b interleukin 1 beta ISO protein:increased expression:blood serum (human) RGD PMID:31396300 RGD:126908003 NCBI chr 3:116,577,005...116,583,386
Ensembl chr 3:116,577,010...116,583,415 		JBrowse link
G Il6 interleukin 6 ISO protein:increased expression:blood serum (human) RGD PMID:31396300 RGD:126908003 NCBI chr 4:5,214,602...5,219,178
Ensembl chr 4:5,213,394...5,219,178 		JBrowse link
G Irf1 interferon regulatory factor 1 ISO RGD PMID:9679752 RGD:1600013 NCBI chr10:37,917,155...37,924,166
Ensembl chr10:37,916,670...37,924,166 		JBrowse link
G Kit KIT proto-oncogene receptor tyrosine kinase ISO ClinVar Annotator: match by term: Gastric adenocarcinoma ClinVar PMID:7530509 PMID:9438854 PMID:11073817 PMID:11276010 PMID:11526490 More... NCBI chr14:32,547,459...32,624,694
Ensembl chr14:32,548,877...32,624,652 		JBrowse link
G Kmt2d lysine methyltransferase 2D ISO RGD PMID:30177394 RGD:150521710 NCBI chr 7:129,980,744...130,022,088
Ensembl chr 7:129,962,887...130,020,325 		JBrowse link
G Kras KRAS proto-oncogene, GTPase ISO ClinVar Annotator: match by term: Adenocarcinoma of stomach ClinVar PMID:2278970 PMID:3122217 PMID:12460918 PMID:15696205 PMID:16361624 More... NCBI chr 4:178,185,418...178,218,484 JBrowse link
G Lrrc56 leucine rich repeat containing 56 ISO ClinVar Annotator: match by term: Adenocarcinoma of stomach | ClinVar Annotator: match by term: Gastric adenocarcinoma ClinVar PMID:11150980 PMID:12835555 PMID:16155195 PMID:16170316 PMID:16329078 More... NCBI chr 1:196,299,843...196,315,170
Ensembl chr 1:196,299,846...196,315,172 		JBrowse link
G Map2k1 mitogen activated protein kinase kinase 1 ISO ClinVar Annotator: match by term: Adenocarcinoma of stomach | ClinVar Annotator: match by term: Gastric adenocarcinoma ClinVar PMID:23444215 PMID:25157968 PMID:26619011 NCBI chr 8:64,683,449...64,754,900
Ensembl chr 8:64,683,449...64,755,147 		JBrowse link
G Map2k2 mitogen activated protein kinase kinase 2 ISO ClinVar Annotator: match by term: Gastric adenocarcinoma ClinVar PMID:18042262 PMID:26619011 NCBI chr 7:8,590,729...8,610,279
Ensembl chr 7:8,580,905...8,610,243 		JBrowse link
G Map2k4 mitogen activated protein kinase kinase 4 severity ISO protein:increased expression:stomach (human) RGD PMID:10854223 RGD:150429764 NCBI chr10:50,343,227...50,447,956
Ensembl chr10:50,344,915...50,447,993 		JBrowse link
G Mapk14 mitogen activated protein kinase 14 disease_progression
exacerbates		 ISO mRNA:increased expression:stomach (human) RGD PMID:30238991 PMID:32243890 RGD:151665792, RGD:151665345 NCBI chr20:6,749,646...6,810,590
Ensembl chr20:6,749,670...6,810,589 		JBrowse link
G Med12 mediator complex subunit 12 ISO ClinVar Annotator: match by term: Gastric adenocarcinoma ClinVar PMID:26619011 NCBI chr  X:66,404,807...66,427,775
Ensembl chr  X:66,404,760...66,428,387 		JBrowse link
G Mir20a microRNA 20a ISO miRNA:increased expression:stomach, serum,extracellular exosome RGD PMID:27756776 RGD:25823155 NCBI chr15:92,181,084...92,181,168
Ensembl chr15:92,181,084...92,181,168 		JBrowse link
G Mir31 microRNA 31 ISO RNA:decreased expression:blood serum (human) RGD PMID:21658006 RGD:152998938 NCBI chr 5:103,599,038...103,599,143 JBrowse link
G Mlh1 mutL homolog 1 ISO ClinVar Annotator: match by term: Gastric adenocarcinoma ClinVar PMID:15340264 PMID:17510385 PMID:18307539 PMID:19419416 PMID:22136435 More... NCBI chr 8:111,196,468...111,233,721
Ensembl chr 8:111,196,468...111,233,617 		JBrowse link
G Mtor mechanistic target of rapamycin kinase ISO ClinVar Annotator: match by term: Adenocarcinoma of stomach ClinVar PMID:26619011 NCBI chr 5:158,884,856...158,994,311
Ensembl chr 5:158,884,804...158,994,311 		JBrowse link
G Naip6 NLR family, apoptosis inhibitory protein 6 disease_progression ISO mRNA:increased expression:stomach (human) RGD PMID:31964418 RGD:153344516 NCBI chr 2:31,507,423...31,559,098
Ensembl chr 2:31,507,424...31,570,542 		JBrowse link
G Nras NRAS proto-oncogene, GTPase ISO ClinVar Annotator: match by term: Adenocarcinoma of stomach ClinVar PMID:1654209 PMID:2278970 PMID:2407301 PMID:2674680 PMID:2989702 More... NCBI chr 2:190,582,885...190,593,509
Ensembl chr 2:190,582,918...190,591,626 		JBrowse link
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha ISO ClinVar Annotator: match by term: Adenocarcinoma of stomach | ClinVar Annotator: match by term: Gastric adenocarcinoma ClinVar PMID:15016963 PMID:15254419 PMID:15520168 PMID:15608678 PMID:15647370 More... NCBI chr 2:115,175,275...115,249,034
Ensembl chr 2:115,174,984...115,249,032 		JBrowse link
G Plce1 phospholipase C, epsilon 1 ameliorates ISO human cells in a mouse model RGD PMID:24796667 RGD:151708719 NCBI chr 1:236,243,445...236,552,571
Ensembl chr 1:236,244,683...236,551,438 		JBrowse link
G Pmepa1 prostate transmembrane protein, androgen induced 1 ISO mRNA:increased expression:stomach RGD PMID:11568975 RGD:2315108 NCBI chr 3:162,011,884...162,060,343
Ensembl chr 3:162,012,751...162,060,454 		JBrowse link
G Pole DNA polymerase epsilon, catalytic subunit ISO ClinVar Annotator: match by term: Adenocarcinoma of stomach ClinVar PMID:25228659 PMID:26619011 PMID:27573199 PMID:28492532 PMID:29352080 NCBI chr12:46,345,420...46,393,984
Ensembl chr12:46,345,420...46,393,939 		JBrowse link
G Ppp2r1a protein phosphatase 2 scaffold subunit A alpha ISO ClinVar Annotator: match by term: Adenocarcinoma of stomach | ClinVar Annotator: match by term: Gastric adenocarcinoma ClinVar PMID:25741868 PMID:26168268 PMID:26619011 PMID:28492532 PMID:31687265 More... NCBI chr 1:60,540,223...60,559,467
Ensembl chr 1:60,540,194...60,560,129 		JBrowse link
G Pten phosphatase and tensin homolog ISO ClinVar Annotator: match by term: Adenocarcinoma of stomach | ClinVar Annotator: match by term: Gastric adenocarcinoma ClinVar PMID:1945792 PMID:9467011 PMID:9915974 PMID:10866302 PMID:11051241 More... NCBI chr 1:230,630,443...230,697,070
Ensembl chr 1:230,630,338...230,696,838 		JBrowse link
G Ptpn11 protein tyrosine phosphatase, non-receptor type 11 ISO ClinVar Annotator: match by term: Adenocarcinoma of stomach ClinVar PMID:26619011 PMID:26822237 NCBI chr12:35,365,436...35,424,925
Ensembl chr12:35,383,144...35,424,925 		JBrowse link
G Ptpn13 protein tyrosine phosphatase, non-receptor type 13 disease_progression ISO protein:increased expression:stomach RGD PMID:10660140 PMID:32536826 RGD:152599189, RGD:152975628 NCBI chr14:6,108,202...6,282,619
Ensembl chr14:6,108,211...6,282,563 		JBrowse link
G Ptpra protein tyrosine phosphatase, receptor type, A ISO associated with metastasis; protein:increased expression:gastric mucosa (human) RGD PMID:16338072 RGD:151660348 NCBI chr 3:117,650,146...117,759,744
Ensembl chr 3:117,650,183...117,759,728 		JBrowse link
G Ptprz1 protein tyrosine phosphatase, receptor type Z1 ISO associated with metastasis; protein:increased expression:gastric mucosa (human) RGD PMID:16338072 RGD:151660348 NCBI chr 4:51,397,316...51,595,220
Ensembl chr 4:51,397,601...51,595,218 		JBrowse link
G Rac1 Rac family small GTPase 1 exacerbates ISO protein:increased expression:stomach (human) RGD PMID:23485997 RGD:153300951 NCBI chr12:11,037,028...11,057,251
Ensembl chr12:11,036,698...11,057,251 		JBrowse link
G Raf1 Raf-1 proto-oncogene, serine/threonine kinase ISO ClinVar Annotator: match by term: Adenocarcinoma of stomach ClinVar PMID:1760348 PMID:10064593 PMID:17603482 PMID:17603483 PMID:19568997 More... NCBI chr 4:148,679,534...148,740,265
Ensembl chr 4:148,679,530...148,740,317 		JBrowse link
G Rhoa ras homolog family member A ISO ClinVar Annotator: match by term: Adenocarcinoma of stomach | ClinVar Annotator: match by term: Gastric adenocarcinoma ClinVar PMID:26619011 NCBI chr 8:108,991,926...109,025,746
Ensembl chr 8:108,991,954...109,025,746 		JBrowse link
G Rnaset2 ribonuclease T2 disease_progression ISO mRNA, protein:decreased expression:stomach (human) RGD PMID:32528897 RGD:153002801 NCBI chr 1:52,576,344...52,603,151
Ensembl chr 1:52,585,929...52,603,147 		JBrowse link
G Rnf43 ring finger protein 43 severity ISO human cells in a mouse model RGD PMID:30380024 RGD:151361216 NCBI chr10:72,461,508...72,537,301
Ensembl chr10:72,464,348...72,536,977 		JBrowse link
G RT1-Ba RT1 class II, locus Ba susceptibility ISO associated with Helicobacter Infections;DNA:polymorphism: :HLA-DQA1*0102 (human) RGD PMID:9506344 RGD:127285393 NCBI chr20:4,575,134...4,579,727
Ensembl chr20:4,575,134...4,579,744 		JBrowse link
G Rtel1 regulator of telomere elongation helicase 1 susceptibility ISO DNA:amplification:cds: (human) RGD PMID:27366209 RGD:152995256 NCBI chr 3:168,427,247...168,465,349
Ensembl chr 3:168,419,579...168,465,348 		JBrowse link
G Slc7a5 solute carrier family 7 member 5 ISO protein:increased expression:mucosa: RGD PMID:21501294 RGD:151361203 NCBI chr19:49,935,220...49,963,823
Ensembl chr19:49,935,220...49,963,823 		JBrowse link
G Smad4 SMAD family member 4 ISO ClinVar Annotator: match by term: Adenocarcinoma of stomach ClinVar PMID:6604412 PMID:8898652 PMID:9214508 PMID:9285566 PMID:9582123 More... NCBI chr18:67,243,742...67,274,438
Ensembl chr18:67,243,742...67,274,438 		JBrowse link
G Stat1 signal transducer and activator of transcription 1 exacerbates ISO mRNA:increased expression:stomach (human) RGD PMID:33042401 RGD:153298934 NCBI chr 9:49,419,561...49,459,969
Ensembl chr 9:49,419,340...49,588,540 		JBrowse link
G Stat2 signal transducer and activator of transcription 2 ISO mRNA:increased expression:stomach (human) RGD PMID:33042401 RGD:153298934 NCBI chr 7:702,565...718,349
Ensembl chr 7:702,495...718,967 		JBrowse link
G Stat3 signal transducer and activator of transcription 3 exacerbates ISO mRNA:increased expression:stomach (human) RGD PMID:33042401 PMID:33042401 RGD:153298934, RGD:153298934 NCBI chr10:85,811,206...85,863,057
Ensembl chr10:85,811,218...85,863,057 		JBrowse link
G Stat4 signal transducer and activator of transcription 4 ISO mRNA:increased expression:stomach (human) RGD PMID:33042401 RGD:153298934 NCBI chr 9:49,472,660...49,588,540
Ensembl chr 9:49,419,340...49,588,540 		JBrowse link
G Stat5a signal transducer and activator of transcription 5A exacerbates ISO mRNA:increased expression:stomach (human) RGD PMID:33042401 RGD:153298934 NCBI chr10:85,785,537...85,809,869
Ensembl chr10:85,785,537...85,809,866 		JBrowse link
G Stat5b signal transducer and activator of transcription 5B exacerbates ISO mRNA:increased expression:stomach (human) RGD PMID:33042401 RGD:153298934 NCBI chr10:85,704,841...85,775,856
Ensembl chr10:85,705,670...85,775,668 		JBrowse link
G Stat6 signal transducer and activator of transcription 6 exacerbates ISO mRNA:increased expression:stomach (human) RGD PMID:33042401 RGD:153298934 NCBI chr 7:63,480,229...63,497,551
Ensembl chr 7:63,479,642...63,498,495 		JBrowse link
G Tp53 tumor protein p53 ISO DNA:missense mutations, loss of heterozygosity:multiple
ClinVar Annotator: match by term: Adenocarcinoma of stomach | ClinVar Annotator: match by term: Gastric adenocarcinoma		 ClinVar
RGD		 PMID:124622 PMID:1349175 PMID:1359493 PMID:1565143 PMID:1565144 More... RGD:14995496 NCBI chr10:54,300,070...54,311,525
Ensembl chr10:54,300,048...54,311,524 		JBrowse link
G Ubr5 ubiquitin protein ligase E3 component n-recognin 5 ameliorates ISO human cell line in a mouse model RGD PMID:27590582 RGD:151665193 NCBI chr 7:69,115,216...69,224,843
Ensembl chr 7:69,116,761...69,224,903 		JBrowse link
G Xiap X-linked inhibitor of apoptosis disease_progression ISO mRNA:increased expression:stomach (human) RGD PMID:31964418 RGD:153344516 NCBI chr  X:120,890,537...120,938,413
Ensembl chr  X:120,897,907...120,934,700 		JBrowse link
G Xpo1 exportin 1 ameliorates
exacerbates		 ISO human cell line in a mouse model
protein:decreased expression:stomach (human)		 RGD PMID:30115935 PMID:28373767 RGD:151665802, RGD:151667432 NCBI chr14:97,233,282...97,275,536
Ensembl chr14:97,233,270...97,275,498 		JBrowse link
Gastric Adenocarcinoma and Proximal Polyposis of the Stomach term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apc APC regulator of WNT signaling pathway ISO ClinVar Annotator: match by term: Gastric adenocarcinoma and proximal polyposis of the stomach OMIM
ClinVar		 PMID:1316610 PMID:1324223 PMID:1944466 PMID:2996804 PMID:8381579 More... NCBI chr18:25,828,558...25,925,511
Ensembl chr18:25,864,222...25,922,696 		JBrowse link
gastric body carcinoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt3b DNA methyltransferase 3 beta ISO RGD PMID:20127025 RGD:9589084 NCBI chr 3:142,130,588...142,169,128
Ensembl chr 3:142,130,592...142,169,124 		JBrowse link
gastric cardia adenocarcinoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alb albumin disease_progression ISO RGD PMID:15585392 RGD:11035298 NCBI chr14:17,607,397...17,622,814
Ensembl chr14:17,607,381...17,622,836 		JBrowse link
G Xrcc1 X-ray repair cross complementing 1 susceptibility ISO DNA:SNP:cds: p.R399Q (human) RGD PMID:16890595 RGD:150530492 NCBI chr 1:80,140,495...80,168,705
Ensembl chr 1:80,141,207...80,168,701 		JBrowse link
gastric cardia carcinoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Xrcc1 X-ray repair cross complementing 1 susceptibility ISO DNA:SNP::p.R194W (human) RGD PMID:20863780 RGD:150530627 NCBI chr 1:80,140,495...80,168,705
Ensembl chr 1:80,141,207...80,168,701 		JBrowse link
gastric papillary adenocarcinoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli1 GLI family zinc finger 1 ISO protein:increased expression:stomach RGD PMID:17259107 RGD:150340552 NCBI chr 7:63,156,926...63,169,579
Ensembl chr 7:63,156,926...63,169,251 		JBrowse link
G Smo smoothened, frizzled class receptor ISO protein:increased expression:stomach RGD PMID:17259107 RGD:150340552 NCBI chr 4:58,343,626...58,373,823
Ensembl chr 4:58,343,529...58,373,829 		JBrowse link
gastric tubular adenocarcinoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli1 GLI family zinc finger 1 ISO protein:increased expression:stomach RGD PMID:17259107 RGD:150340552 NCBI chr 7:63,156,926...63,169,579
Ensembl chr 7:63,156,926...63,169,251 		JBrowse link
G Smo smoothened, frizzled class receptor ISO protein:increased expression:stomach RGD PMID:17259107 RGD:150340552 NCBI chr 4:58,343,626...58,373,823
Ensembl chr 4:58,343,529...58,373,829 		JBrowse link
linitis plastica term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Psca prostate stem cell antigen ISO CTD Direct Evidence: marker/mechanism CTD PMID:18488030 NCBI chr 7:106,598,203...106,603,114
Ensembl chr 7:106,595,284...106,609,746 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  disease 21128
    disease of cellular proliferation 7667
      Neoplasms by Histologic Type 5258
        cell type cancer 3731
          carcinoma 3200
            stomach carcinoma 116
              gastric adenocarcinoma + 87
              gastric body carcinoma 1
              gastric cardia carcinoma + 2
              gastric fundus carcinoma 0
              gastric pylorus carcinoma 0
              gastric small cell carcinoma 0
              gastric squamous cell carcinoma + 0
              stomach carcinoma in situ 0
Path 2
Term Annotations click to browse term
  disease 21128
    disease of anatomical entity 18212
      gastrointestinal system disease 7050
        Digestive System Neoplasms 3836
          Gastrointestinal Neoplasms 3711
            Stomach Neoplasms 567
              stomach cancer 301
                stomach carcinoma 116
                  gastric adenocarcinoma + 87
                  gastric body carcinoma 1
                  gastric cardia carcinoma + 2
                  gastric fundus carcinoma 0
                  gastric pylorus carcinoma 0
                  gastric small cell carcinoma 0
                  gastric squamous cell carcinoma + 0
                  stomach carcinoma in situ 0
paths to the root