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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.
Term:bile duct adenoma
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Accession:DOID:5381 term browser browse the term
Definition:A biliary tract benign neoplasm that results_in a small firm white nodule with multiple bile ducts that are located_in a fibrous stroma. (DO)
Synonyms:exact_synonym: Bile Duct Adenomas;   Cholangioma;   Cholangiomas;   cholangioadenoma
 primary_id: MESH:D002759
 xref: EFO:1000123;   NCI:C2942
For additional species annotation, visit the Alliance of Genome Resources.


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bile duct adenoma term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Braf Braf transforming gene IAGP DNA:missense mutation:cds:p.V600E (human) RGD PMID:25704541 RGD:11521169 NCBI chr 6:39,580,171...39,702,592
Ensembl chr 6:39,580,171...39,702,397 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  disease 18300
    disease of cellular proliferation 7494
      Neoplasms by Histologic Type 5225
        Glandular and Epithelial Neoplasms 3717
          adenoma 717
            bile duct adenoma 1
              bile duct cystadenoma + 0
              extrahepatic bile duct adenoma + 0
              intrahepatic bile duct adenoma + 0
Path 2
Term Annotations click to browse term
  disease 18300
    disease of cellular proliferation 7494
      Neoplasms by Site 6949
        Digestive System Neoplasms 3823
          Gastrointestinal Neoplasms 3697
            gastrointestinal system benign neoplasm 234
              hepatobiliary benign neoplasm 184
                biliary tract benign neoplasm 156
                  Bile Duct Neoplasms 153
                    bile duct adenoma 1
                      bile duct cystadenoma + 0
                      extrahepatic bile duct adenoma + 0
                      intrahepatic bile duct adenoma + 0
paths to the root