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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.
Term:thoracic cancer
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Accession:DOID:5093 term browser browse the term
Definition:An organ system cancer located_in the thoracic cavity that develops in the different types of cells within the lungs, as well as less common cancers of the esophagus, the trachea, or the chest wall. (DO)
Synonyms:exact_synonym: thorax cancer
 xref: ICD10CM:C76.1;   ICD9CM:195.1;   NCI:C3406;   NCI:C3576
For additional species annotation, visit the Alliance of Genome Resources.


show annotations for term's descendants           Sort by:
bilateral breast cancer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atm ATM serine/threonine kinase ISO ClinVar Annotator: match by term: Bilateral breast carcinoma ClinVar PMID:19781682 PMID:25085752 PMID:25741868 PMID:26689913 PMID:26787654 More... NCBI chr 8:53,828,741...53,932,773
Ensembl chr 8:53,831,093...53,932,437 		JBrowse link
G Brca1 BRCA1, DNA repair associated ISO ClinVar Annotator: match by term: bilateral breast cancer ClinVar PMID:9150151 PMID:11376024 PMID:16683254 PMID:19491284 PMID:20104584 More... NCBI chr10:86,417,441...86,477,762
Ensembl chr10:86,418,000...86,477,304 		JBrowse link
G Brca2 BRCA2, DNA repair associated ISO ClinVar Annotator: match by term: bilateral breast cancer ClinVar PMID:25741868 NCBI chr12:59,492...103,789
Ensembl chr12:59,819...100,567 		JBrowse link
G Mc1r melanocortin 1 receptor ISO ClinVar Annotator: match by term: bilateral breast cancer ClinVar PMID:16809487 PMID:16982779 PMID:24335900 PMID:24982914 PMID:25741868 More... NCBI chr19:51,452,448...51,455,375
Ensembl chr19:51,453,239...51,454,192 		JBrowse link
G Msh6 mutS homolog 6 ISO ClinVar Annotator: match by term: bilateral breast cancer ClinVar PMID:23047549 PMID:23621914 PMID:25741868 PMID:26467025 PMID:26689913 More... NCBI chr 6:6,562,631...6,579,995
Ensembl chr 6:6,562,632...6,579,956 		JBrowse link
G Palb2 partner and localizer of BRCA2 ISO ClinVar Annotator: match by term: bilateral breast cancer ClinVar PMID:20852946 PMID:22692731 PMID:24448499 PMID:24556926 PMID:25085752 More... NCBI chr 1:176,665,076...176,689,053
Ensembl chr 1:176,665,076...176,688,990 		JBrowse link
G Sdhb succinate dehydrogenase complex iron sulfur subunit B ISO ClinVar Annotator: match by term: bilateral breast cancer ClinVar PMID:17102082 PMID:19351833 PMID:20208144 PMID:21520333 PMID:23175444 More... NCBI chr 5:153,264,906...153,285,570
Ensembl chr 5:153,264,899...153,314,293 		JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 ISO ClinVar Annotator: match by term: bilateral breast cancer ClinVar PMID:25741868 PMID:26467025 PMID:28492532 PMID:31874108 PMID:33558524 More... NCBI chr 8:20,167,717...20,258,975
Ensembl chr 8:20,167,717...20,258,975 		JBrowse link
breast adenocarcinoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akt1 AKT serine/threonine kinase 1 ISO ClinVar Annotator: match by term: Breast adenocarcinoma, somatic ClinVar PMID:17611497 PMID:18256540 PMID:18392055 PMID:18504432 PMID:18611285 More... NCBI chr 6:131,713,716...131,735,319
Ensembl chr 6:131,713,720...131,733,921 		JBrowse link
G Brca1 BRCA1, DNA repair associated treatment ISO RGD PMID:8589721 RGD:126925966 NCBI chr10:86,417,441...86,477,762
Ensembl chr10:86,418,000...86,477,304 		JBrowse link
G Cat catalase ISO RGD PMID:25050522 RGD:9226881 NCBI chr 3:89,842,393...89,874,577
Ensembl chr 3:89,842,399...89,874,478 		JBrowse link
G Ccne1 cyclin E1 ISO DNA:amplification RGD PMID:18089785 RGD:2289225 NCBI chr 1:90,781,947...90,791,188
Ensembl chr 1:90,781,949...90,791,101 		JBrowse link
G Ccng1 cyclin G1 ISO mRNA, protein:altered expression:mammary (mouse) RGD PMID:11146550 RGD:2315939 NCBI chr10:25,176,231...25,182,604
Ensembl chr10:25,176,234...25,181,641 		JBrowse link
G Cyp1b1 cytochrome P450, family 1, subfamily b, polypeptide 1 IEP mRNA:increased expression:mammary epithelium (rat) RGD PMID:11097088 RGD:7829735 NCBI chr 6:15,342,312...15,350,886
Ensembl chr 6:15,342,344...15,350,917 		JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 no_association ISO RGD PMID:11466624 RGD:2289868 NCBI chr14:76,987,242...77,002,671
Ensembl chr14:76,987,993...77,003,341 		JBrowse link
G H19 H19 imprinted maternally expressed transcript ISO mRNA:increased expression:breast RGD PMID:9811352 RGD:2306185 NCBI chr 1:197,730,698...197,733,374
Ensembl chr 1:197,730,698...197,733,134 		JBrowse link
G Kras KRAS proto-oncogene, GTPase ISO ClinVar Annotator: match by term: Breast adenocarcinoma, somatic ClinVar PMID:2278970 PMID:2547513 PMID:3122217 PMID:3627975 PMID:12460918 More... NCBI chr 4:178,185,418...178,218,484 JBrowse link
G Ksr1 kinase suppressor of ras 1 severity ISO RGD PMID:24909178 RGD:127229932 NCBI chr10:63,961,771...64,098,076
Ensembl chr10:63,961,759...64,098,076 		JBrowse link
G Muc1 mucin 1, cell surface associated ISO mRNA,protein:increased expression:breast RGD PMID:7678777 RGD:2324855 NCBI chr 2:174,635,989...174,640,738
Ensembl chr 2:174,635,995...174,640,733 		JBrowse link
G Mxi1 MAX interactor 1, dimerization protein IAGP RGD PMID:10849326 RGD:1298988 NCBI chr 1:252,323,915...252,383,682
Ensembl chr 1:252,323,303...252,383,681 		JBrowse link
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha ISO ClinVar Annotator: match by term: Breast adenocarcinoma, somatic ClinVar PMID:15016963 PMID:15254419 PMID:15520168 PMID:15608678 PMID:15647370 More... NCBI chr 2:115,175,275...115,249,034
Ensembl chr 2:115,174,984...115,249,032 		JBrowse link
G Rb1cc1 RB1-inducible coiled-coil 1 ISO ClinVar Annotator: match by term: Breast adenocarcinoma ClinVar PMID:12068296 NCBI chr 5:13,161,648...13,225,560
Ensembl chr 5:13,161,648...13,225,560 		JBrowse link
G Slc22a18 solute carrier family 22, member 18 ISO ClinVar Annotator: match by term: Breast adenocarcinoma ClinVar PMID:9520460 NCBI chr 1:198,670,626...198,694,977
Ensembl chr 1:198,671,731...198,694,975 		JBrowse link
G Tnf tumor necrosis factor ISO human protein in a rat model RGD PMID:12536235 RGD:14995452 NCBI chr20:3,622,011...3,624,629
Ensembl chr20:3,622,011...3,624,629 		JBrowse link
G Tp53 tumor protein p53 ISO ClinVar Annotator: match by term: Breast adenocarcinoma, somatic ClinVar
RGD		 PMID:1673792 PMID:1686725 PMID:7881428 PMID:8364550 PMID:10713666 More... RGD:2315939 NCBI chr10:54,300,070...54,311,525
Ensembl chr10:54,300,048...54,311,524 		JBrowse link
breast angiosarcoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kdr kinase insert domain receptor ISO DNA:mutation:multiple (human) RGD PMID:32123305 RGD:151665102 NCBI chr14:32,217,871...32,261,018
Ensembl chr14:32,217,871...32,261,018 		JBrowse link
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha ISO DNA:mutation:multiple (human) RGD PMID:32123305 RGD:151665102 NCBI chr 2:115,175,275...115,249,034
Ensembl chr 2:115,174,984...115,249,032 		JBrowse link
G Ptprb protein tyrosine phosphatase, receptor type, B ISO DNA:mutation:multiple (human) RGD PMID:32123305 RGD:151665102 NCBI chr 7:51,953,375...52,034,751
Ensembl chr 7:51,930,015...52,034,748 		JBrowse link
breast cancer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb11 ATP binding cassette subfamily B member 11 ISO ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:16641580 PMID:18395098 PMID:20683201 PMID:25741868 PMID:27114171 More... NCBI chr 3:54,016,854...54,112,797
Ensembl chr 3:54,017,127...54,112,730 		JBrowse link
G Abraxas1 abraxas 1, BRCA1 A complex subunit ISO ClinVar Annotator: match by term: Hereditary breast cancer, ABRAXAS1-related | ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:25741868 PMID:28492532 NCBI chr14:8,796,281...8,810,625
Ensembl chr14:8,796,266...8,810,622 		JBrowse link
G Ace angiotensin I converting enzyme susceptibility ISO DNA:insertion/deletion, haplotype RGD PMID:23828384 RGD:8548866 NCBI chr10:90,910,316...90,930,437
Ensembl chr10:90,910,316...90,931,131 		JBrowse link
G Acsl3 acyl-CoA synthetase long-chain family member 3 disease_progression ISO DNA:deletion
mRNA:increased expression:breast		 RGD PMID:28977883 PMID:23512947 RGD:13831299, RGD:13831301 NCBI chr 9:80,115,164...80,164,636
Ensembl chr 9:80,115,112...80,164,627 		JBrowse link
G Adam28 ADAM metallopeptidase domain 28 exacerbates ISO RGD PMID:19549921 RGD:153298911 NCBI chr15:43,774,463...43,840,726
Ensembl chr15:42,944,467...43,840,672 		JBrowse link
G Adipoq adiponectin, C1Q and collagen domain containing no_association ISO DNA:SNPs: :rs1501299, rs2241766 (human)
protein:decreased expression:serum		 RGD PMID:18451143 PMID:17192291 PMID:16019138 PMID:19723917 RGD:8694415, RGD:8694447, RGD:8694425, RGD:8694417 NCBI chr11:77,721,912...77,735,644
Ensembl chr11:77,721,912...77,735,564 		JBrowse link
G Adipor1 adiponectin receptor 1 no_association ISO DNA:SNPs: :rs7539542 (human) RGD PMID:18451143 PMID:19723917 RGD:8694415, RGD:8694417 NCBI chr13:45,859,461...45,879,248
Ensembl chr13:45,859,533...45,879,241 		JBrowse link
G Adipor2 adiponectin receptor 2 no_association ISO RGD PMID:19723917 RGD:8694417 NCBI chr 4:152,524,604...152,588,848
Ensembl chr 4:152,524,623...152,559,355 		JBrowse link
G Adm adrenomedullin ISO RGD PMID:16841081 RGD:2325318 NCBI chr 1:164,745,484...164,747,655
Ensembl chr 1:164,745,466...164,747,654 		JBrowse link
G Adsl adenylosuccinate lyase severity ISO
IEP		 protein:increased activity:tumor (human)
protein:increased activity:tumor (rat)		 RGD PMID:3690833 PMID:2937404 RGD:1598760, RGD:1598766 NCBI chr 7:112,479,256...112,503,439
Ensembl chr 7:112,479,271...112,503,760 		JBrowse link
G Agr2 anterior gradient 2, protein disulphide isomerase family member disease_progression ISO RGD PMID:16598187 RGD:2325661 NCBI chr 6:52,708,602...52,729,378
Ensembl chr 6:52,708,602...52,729,371 		JBrowse link
G Agt angiotensinogen susceptibility ISO DNA:polymorphism: :p.M235T (human)
protein:increased expression:serum
DNA:polymorphisms, haplotypes: :p.T174M, p.M235T (human) 		RGD PMID:16823505 PMID:23374911 PMID:23828384 RGD:8548861, RGD:8548901, RGD:8548866 NCBI chr19:52,529,139...52,549,618
Ensembl chr19:52,529,185...52,540,977 		JBrowse link
G Agtr1a angiotensin II receptor, type 1a ISO DNA:polymorphism, haplotype: :1166A>C (human) RGD PMID:23828384 RGD:8548866 NCBI chr17:34,173,446...34,226,892
Ensembl chr17:34,174,429...34,226,946 		JBrowse link
G Aif1l allograft inflammatory factor 1-like severity ISO RGD PMID:30233209 RGD:13842475 NCBI chr 3:15,229,476...15,254,033
Ensembl chr 3:15,229,524...15,254,023 		JBrowse link
G Akr1a1 aldo-keto reductase family 1 member A1 ISO mRNA:increased expression:breast RGD PMID:25526449 RGD:27226689 NCBI chr 5:130,092,945...130,130,277
Ensembl chr 5:130,092,732...130,113,674 		JBrowse link
G Akt1 AKT serine/threonine kinase 1 ISO ClinVar Annotator: match by term: Breast cancer, somatic
ClinVar Annotator: match by term: Malignant tumor of breast		 OMIM
ClinVar		 PMID:17611497 PMID:18256540 PMID:18392055 PMID:18504432 PMID:18611285 More... NCBI chr 6:131,713,716...131,735,319
Ensembl chr 6:131,713,720...131,733,921 		JBrowse link
G Alox12 arachidonate 12-lipoxygenase, 12S type disease_progression ISO mRNA:increased expression:breast RGD PMID:19282568 RGD:2315607 NCBI chr10:54,958,263...54,970,542
Ensembl chr10:54,958,271...54,970,542 		JBrowse link
G Alox5ap arachidonate 5-lipoxygenase activating protein ISO DNA:polymorphism:g.-4800A>G (human) RGD PMID:18843019 RGD:2313902 NCBI chr12:5,748,941...5,772,986
Ensembl chr12:5,748,944...5,772,986 		JBrowse link
G Amh anti-Mullerian hormone onset ISO RGD PMID:19820206 RGD:2315637 NCBI chr 7:8,906,776...8,909,192
Ensembl chr 7:8,906,836...8,909,282 		JBrowse link
G Antxr1 ANTXR cell adhesion molecule 1 disease_progression ISO mRNA:increased expression:breast: RGD PMID:17016666 RGD:9684946 NCBI chr 4:119,590,770...119,778,232
Ensembl chr 4:119,590,771...119,778,232 		JBrowse link
G Anxa7 annexin A7 disease_progression ISO protein:increased expression:breast RGD PMID:15073110 RGD:2292655 NCBI chr15:3,821,798...3,849,659
Ensembl chr15:3,821,845...3,849,385 		JBrowse link
G Aopep aminopeptidase O ISO ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:7689011 PMID:08128956 PMID:08844212 PMID:8882868 PMID:9521584 More... NCBI chr17:1,811,281...2,127,316
Ensembl chr17:1,811,980...2,127,331 		JBrowse link
G Apc APC regulator of WNT signaling pathway ISS
ISO		 OMIM:114480
ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant tumor of breast		 MouseDO
ClinVar		 PMID:8940262 PMID:9288102 PMID:9585599 PMID:9724771 PMID:9731522 More... NCBI chr18:25,828,558...25,925,511
Ensembl chr18:25,864,222...25,922,696 		JBrowse link
G Apex1 apurinic/apyrimidinic endodeoxyribonuclease 1 susceptibility ISO DNA:polymorphism: :p.D148E (human) RGD PMID:18701435 RGD:2315661 NCBI chr15:24,144,595...24,146,785
Ensembl chr15:24,144,362...24,146,785 		JBrowse link
G Apoc3 apolipoprotein C3 disease_progression ISO RGD PMID:28715644 RGD:153350084 NCBI chr 8:46,531,478...46,533,658
Ensembl chr 8:46,531,478...46,533,583 		JBrowse link
G Apoe apolipoprotein E susceptibility
no_association		 ISO DNA:polymorphism:exon:
DNA:polymprphism:exon:		 RGD PMID:15830139 PMID:16752225 RGD:7495789, RGD:7771592 NCBI chr 1:79,353,924...79,357,852
Ensembl chr 1:79,353,916...79,357,932 		JBrowse link
G Areg amphiregulin ISO RGD PMID:16438846 RGD:2292658 NCBI chr14:16,972,185...16,981,443
Ensembl chr14:16,972,187...16,981,535 		JBrowse link
G Arid1a AT-rich interaction domain 1A treatment ISO human cells in mouse model RGD PMID:26069190 RGD:11072938 NCBI chr 5:145,908,173...145,981,552
Ensembl chr 5:145,908,181...145,985,564 		JBrowse link
G Asf1b anti-silencing function 1B histone chaperone disease_progression ISO RGD PMID:21179005 RGD:9586017 NCBI chr19:24,181,024...24,195,604
Ensembl chr19:24,181,028...24,195,549 		JBrowse link
G Atm ATM serine/threonine kinase susceptibility ISO ClinVar Annotator: match by term: Breast cancer, early-onset | ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, early-onset | ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Cancer breast | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, early-onset | ClinVar Annotator: match by term: Breast cancer, somatic | ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, early-onset | ClinVar Annotator: match by term: Breast cancer, somatic | ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Cancer breast | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast		 OMIM
ClinVar
RGD		 PMID:1160401 PMID:1739330 PMID:1739584 PMID:2166257 PMID:2677459 More... RGD:1643350 NCBI chr 8:53,828,741...53,932,773
Ensembl chr 8:53,831,093...53,932,437 		JBrowse link
G Atr ATR serine/threonine kinase ISO ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:25741868 PMID:28492532 NCBI chr 8:96,426,704...96,524,152
Ensembl chr 8:96,426,724...96,524,136 		JBrowse link
G Axin2 axin 2 ISO ClinVar Annotator: match by term: Malignant breast neoplasm ClinVar PMID:21541676 PMID:25236910 PMID:25741868 PMID:26467025 PMID:28492532 More... NCBI chr10:93,893,830...93,927,042
Ensembl chr10:93,899,245...93,926,231 		JBrowse link
G Bad BCL2-associated agonist of cell death disease_progression ISO RGD PMID:17004114 RGD:2292674 NCBI chr 1:204,133,502...204,142,829
Ensembl chr 1:204,131,501...204,142,823 		JBrowse link
G Bag1 BAG cochaperone 1 disease_progression ISO protein:increased expression:breast RGD PMID:11181661 RGD:2293888 NCBI chr 5:56,068,494...56,081,075
Ensembl chr 5:56,068,494...56,081,075 		JBrowse link
G Bard1 BRCA1 associated RING domain 1 severity
susceptibility
no_association		 ISO
ISS		 protein:increased expression, altered localization:breast
ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Cancer breast | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
OMIM:114480
DNA:polymorphism: :p.C557S (human)
DNA:polymorphisms: :p.P24S, p.R378S (human)
DNA:polymorphisms: :multiple (human)
DNA:polymorphisms: :p.V507M, p.C557S (human)
DNA:polymorphism: :p.V507M (human)		 ClinVar
MouseDO
OMIM
RGD		 PMID:9425226 PMID:9536098 PMID:11807980 PMID:14550946 PMID:15342711 More... RGD:2315727, RGD:2315714, RGD:2315713, RGD:2315715, RGD:2315716, RGD:2315717, RGD:2315729 NCBI chr 9:72,616,070...72,694,553
Ensembl chr 9:72,623,155...72,694,265 		JBrowse link
G Bax BCL2 associated X, apoptosis regulator disease_progression ISO RGD PMID:17626754 RGD:1643353 NCBI chr 1:95,940,001...95,945,407
Ensembl chr 1:95,938,808...95,945,368 		JBrowse link
G Bcar1 BCAR1 scaffold protein, Cas family member severity ISO protein:increased expression:breast, cytosol (human) RGD PMID:15448007 RGD:8547748 NCBI chr19:39,679,215...39,713,907
Ensembl chr19:39,679,204...39,713,907 		JBrowse link
G Bcas2 BCAS2, pre-mRNA processing factor ISO DNA:amplification:cds (human) RGD PMID:12169396 RGD:9850147 NCBI chr 2:190,692,503...190,700,386
Ensembl chr 2:190,692,461...190,700,389 		JBrowse link
G Bcas3 BCAS3, microtubule associated cell migration factor ISO RGD PMID:16855396 RGD:2317828 NCBI chr10:70,213,710...70,673,080
Ensembl chr10:70,214,098...70,673,080 		JBrowse link
G Bcl2l1 Bcl2-like 1 ISO RGD PMID:16850344 RGD:1643481 NCBI chr 3:141,253,508...141,304,582
Ensembl chr 3:141,253,523...141,303,479 		JBrowse link
G Becn1 beclin 1 disease_progression ISO RGD PMID:33292020 RGD:155641236 NCBI chr10:86,231,387...86,246,742
Ensembl chr10:86,231,388...86,246,742 		JBrowse link
G Bik BCL2-interacting killer ISO RGD PMID:14633680 RGD:14394816 NCBI chr 7:114,672,277...114,691,296
Ensembl chr 7:114,672,277...114,691,296 		JBrowse link
G Birc2 baculoviral IAP repeat-containing 2 ISO RGD PMID:12218061 RGD:1643528 NCBI chr 8:4,968,856...4,989,325
Ensembl chr 8:4,968,842...4,988,732 		JBrowse link
G Bmp4 bone morphogenetic protein 4 ISO mRNA:increased expression:breast RGD PMID:17004110 RGD:1643590 NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Bmp6 bone morphogenetic protein 6 ISO mRNA:decreased expression:breast RGD PMID:17004110 RGD:1643590 NCBI chr17:26,318,121...26,469,691
Ensembl chr17:26,318,569...26,470,365 		JBrowse link
G Bmp7 bone morphogenetic protein 7 ISO mRNA:increased expression:breast RGD PMID:17004110 RGD:1643590 NCBI chr 3:161,639,915...161,716,938
Ensembl chr 3:161,516,462...161,716,788 		JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A ISO ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:22703879 PMID:23399955 PMID:24033266 PMID:24448499 PMID:24728327 More... NCBI chr16:9,736,390...9,829,825
Ensembl chr16:9,736,630...9,780,616 		JBrowse link
G Brca1 BRCA1, DNA repair associated susceptibility ISO
ISS		 DNA:mutation
ClinVar Annotator: match by term: Breast cancer, somatic | ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, somatic | ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Cancer breast | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, lobular | ClinVar Annotator: match by term: Breast cancer, post-chemotherapy poor survival in | ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, lobular | ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, early-onset | ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
DNA:loss of heterozygosity,deletion, duplication: :c.1504_1508delTTAAA, c.211dupA, c.5266dupC (human)
mRNA, protein:splice variant
OMIM:114480
mRNA:allelic imbalance:lymphocyte
DNA:hypermethylation:promoter		 ClinVar
MouseDO
RGD		 PMID:202008 PMID:1157798 PMID:1673748 PMID:2010458 PMID:2504116 More... RGD:1599497, RGD:127284852, RGD:126925963, RGD:734655, RGD:2293153, RGD:2293151 NCBI chr10:86,417,441...86,477,762
Ensembl chr10:86,418,000...86,477,304 		JBrowse link
G Brca2 BRCA2, DNA repair associated ISO
ISS		 ClinVar Annotator: match by term: Breast cancer, somatic | ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, lobular | ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Cancer breast | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, somatic | ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Cancer breast | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, early-onset | ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, lobular | ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
OMIM:114480
ClinVar Annotator: match by term: Breast cancer, lobular | ClinVar Annotator: match by term: Breast cancer, somatic | ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, invasive ductal | ClinVar Annotator: match by term: Breast cancer, somatic | ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, early-onset | ClinVar Annotator: match by term: Breast cancer, somatic | ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, early-onset | ClinVar Annotator: match by term: Breast cancer, invasive ductal | ClinVar Annotator: match by term: Breast cancer, somatic | ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast		 ClinVar
OMIM
MouseDO		 PMID:234495 PMID:668580 PMID:1169856 PMID:1446381 PMID:2200631 More... NCBI chr12:59,492...103,789
Ensembl chr12:59,819...100,567 		JBrowse link
G Brip1 BRCA1 interacting helicase 1 onset
susceptibility		 ISO DNA:missense mutations:cds:p.P47A, p.M299I (human)
ClinVar Annotator: match by term: Breast cancer, early-onset | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, early-onset | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, early-onset | ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, somatic | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
DNA:snps, haplotype:introns:c.1935+977T>C, c.1473+3729A>G, c.1340+109G>A (rs11871753, rs16945628, rs2191248) (human)
DNA:mutations:multiple (human)
DNA:snp:3' utr:C>A (rs7220740) (human)
DNA:missense mutation:cds:p.Q944E (human)		 OMIM
ClinVar
RGD		 PMID:2455662 PMID:3375802 PMID:9536098 PMID:11301010 PMID:12565990 More... RGD:1600525, RGD:11252109, RGD:11252107, RGD:11252100, RGD:11251779 NCBI chr10:70,907,266...71,031,502
Ensembl chr10:70,907,371...71,030,324 		JBrowse link
G Btg2 BTG anti-proliferation factor 2 ISO protein:decreased expression:breast, nucleus RGD PMID:16849553 RGD:2289068 NCBI chr13:45,531,881...45,535,642
Ensembl chr13:45,531,925...45,535,628 		JBrowse link
G C8h11orf65 similar to human chromosome 11 open reading frame 65 ISO ClinVar Annotator: match by term: Breast cancer, early-onset | ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, early-onset | ClinVar Annotator: match by term: Breast cancer, somatic | ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast		 ClinVar PMID:1160401 PMID:2166257 PMID:4012663 PMID:6504056 PMID:7792600 More... NCBI chr 8:53,796,033...53,825,277
Ensembl chr 8:53,796,366...53,824,748 		JBrowse link
G Casp3 caspase 3 severity ISO protein:decreased expression:breast RGD PMID:18227733 PMID:23979166 RGD:2293092, RGD:13209143 NCBI chr16:45,662,910...45,681,171
Ensembl chr16:45,662,910...45,684,648 		JBrowse link
G Casp7 caspase 7 disease_progression ISO RGD PMID:23979166 RGD:13209143 NCBI chr 1:255,437,438...255,476,737
Ensembl chr 1:255,437,172...255,476,729 		JBrowse link
G Casp8 caspase 8 ISO ClinVar Annotator: match by term: Breast cancer, protection against OMIM
ClinVar		 PMID:15601643 PMID:15998955 PMID:17293864 PMID:24033266 PMID:28492532 NCBI chr 9:60,263,863...60,312,542
Ensembl chr 9:60,264,075...60,312,542 		JBrowse link
G Casp9 caspase 9 ISO mRNA:decreased expression:breast RGD PMID:17011986 RGD:2290492 NCBI chr 5:154,108,872...154,126,628
Ensembl chr 5:154,109,046...154,126,626 		JBrowse link
G Casr calcium-sensing receptor ISO ClinVar Annotator: match by term: Malignant breast neoplasm ClinVar PMID:8636323 PMID:10023897 PMID:10217111 PMID:10912749 PMID:11161843 More... NCBI chr11:64,235,251...64,304,811
Ensembl chr11:64,235,251...64,304,811 		JBrowse link
G Cav1 caveolin 1 no_association
disease_progression		 ISO
ISS		 DNA, protein:hypermethylation, decreased expression:promoter, breast
OMIM:114480
DNA:SNPs: :multiple
DNA:SNPs: :14713G>A (rs3807987), 29107T>A (rs7804372) (human)		 MouseDO
RGD		 PMID:15375584 PMID:21965771 PMID:21965771 PMID:21585620 RGD:2289105, RGD:8661769, RGD:8661769, RGD:8661766 NCBI chr 4:45,640,624...45,673,708
Ensembl chr 4:45,634,918...45,673,705 		JBrowse link
G Cbx7 chromobox 7 severity ISO human gene in a mouse model RGD PMID:25351982 RGD:11352704 NCBI chr 7:111,460,656...111,479,231
Ensembl chr 7:111,460,656...111,477,973 		JBrowse link
G Ccnb1 cyclin B1 disease_progression ISO RGD PMID:19223507 PMID:19957331 RGD:2315937, RGD:2315934 NCBI chr 2:31,912,190...31,921,163
Ensembl chr 2:31,912,193...31,921,172 		JBrowse link
G Ccnd2 cyclin D2 disease_progression ISO RGD PMID:30308939 RGD:151665105 NCBI chr 4:159,966,883...159,989,261
Ensembl chr 4:159,962,363...159,989,495 		JBrowse link
G Ccne1 cyclin E1 disease_progression ISO RGD PMID:17483245 RGD:2289231 NCBI chr 1:90,781,947...90,791,188
Ensembl chr 1:90,781,949...90,791,101 		JBrowse link
G Ccng1 cyclin G1 treatment IEP RGD PMID:23791885 RGD:151356928 NCBI chr10:25,176,231...25,182,604
Ensembl chr10:25,176,234...25,181,641 		JBrowse link
G Ccr5 C-C motif chemokine receptor 5 disease_progression ISO DNA:frameshift mutation: :p.S185_T195del (rs333) (human)
mRNA:increased expression:breast		 RGD PMID:14597737 PMID:24301790 RGD:8551810, RGD:8551816 NCBI chr 8:123,752,423...123,757,538
Ensembl chr 8:123,752,325...123,759,260 		JBrowse link
G Ccr6 C-C motif chemokine receptor 6 disease_progression ISO RGD PMID:21624121 RGD:7483628 NCBI chr 1:52,474,477...52,508,301
Ensembl chr 1:52,474,168...52,498,603 		JBrowse link
G Cd55 CD55 molecule (Cromer blood group) disease_progression ISO RGD PMID:18676748 PMID:15102687 RGD:2326166, RGD:2326170 NCBI chr13:41,857,242...41,885,966
Ensembl chr13:41,857,395...41,885,831 		JBrowse link
G Cdc25c cell division cycle 25C ISO protein:increased expression:breast RGD PMID:15567944 RGD:4105448 NCBI chr18:26,335,156...26,356,199
Ensembl chr18:26,335,834...26,356,185 		JBrowse link
G Cdc73 cell division cycle 73 exacerbates ISO mRNA:increased expression:breast (human) RGD PMID:29221126 RGD:150539444 NCBI chr13:55,357,226...55,449,690
Ensembl chr13:55,357,226...55,449,656 		JBrowse link
G Cdh1 cadherin 1 ISO ClinVar Annotator: match by term: Breast cancer, lobular | ClinVar Annotator: match by term: Breast cancer, somatic | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, lobular | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, lobular | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, lobular | ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast		 ClinVar
OMIM		 PMID:1722187 PMID:2403327 PMID:2449335 PMID:8075649 PMID:8557030 More... NCBI chr19:34,492,371...34,561,775
Ensembl chr19:34,492,371...34,561,775 		JBrowse link
G Cdh13 cadherin 13 ISO DNA:hypermethylation
protein:decreased expression:breast duct:		 RGD PMID:17764565 PMID:8673923 RGD:2293542, RGD:734735 NCBI chr19:46,349,562...47,387,462
Ensembl chr19:46,349,430...47,387,459 		JBrowse link
G Cdk1 cyclin-dependent kinase 1 disease_progression
susceptibility		 ISO DNA:SNP:intron:rs16941635 (human) RGD PMID:17956886 PMID:19377877 RGD:2708463, RGD:2683526 NCBI chr20:19,266,226...19,281,417
Ensembl chr20:19,266,248...19,281,408 		JBrowse link
G Cdk13 cyclin-dependent kinase 13 severity ISO RGD PMID:33292020 RGD:155641236 NCBI chr17:47,251,145...47,344,675
Ensembl chr17:47,251,163...47,341,721 		JBrowse link
G Cdk2 cyclin dependent kinase 2 disease_progression ISO RGD PMID:18236071 RGD:2293557 NCBI chr 7:1,129,878...1,137,431
Ensembl chr 7:1,129,811...1,137,403 		JBrowse link
G Cdk4 cyclin-dependent kinase 4 disease_progression ISO RGD PMID:16440198 RGD:2293576 NCBI chr 7:62,886,124...62,889,562
Ensembl chr 7:62,883,105...62,942,403 		JBrowse link
G Cdkn1b cyclin-dependent kinase inhibitor 1B ISO protein:increased localization:cytoplasm
DNA:SNP		 RGD PMID:18030569 PMID:12244302 PMID:18174243 RGD:2293594, RGD:734746, RGD:2289652 NCBI chr 4:167,760,067...167,765,177
Ensembl chr 4:167,760,181...167,764,982 		JBrowse link
G Cdkn2a cyclin-dependent kinase inhibitor 2A susceptibility ISO DNA:insertion:cds:p.R112_L113insR (human) RGD PMID:10922411 RGD:8552383 NCBI chr 5:103,984,949...103,992,143
Ensembl chr 5:103,984,949...104,003,149 		JBrowse link
G Cdkn2b cyclin-dependent kinase inhibitor 2B ISO ClinVar Annotator: match by term: Malignant tumor of breast ClinVar NCBI chr 5:104,009,839...104,019,082
Ensembl chr 5:104,010,680...104,019,050 		JBrowse link
G Cfb complement factor B treatment ISO RGD PMID:15274022 RGD:7411730 NCBI chr20:3,970,643...3,976,510
Ensembl chr20:3,951,474...3,976,505 		JBrowse link
G Cga glycoprotein hormones, alpha polypeptide disease_progression ISO RGD PMID:11687975 RGD:2293635 NCBI chr 5:49,486,915...49,499,192
Ensembl chr 5:49,487,068...49,499,191 		JBrowse link
G Chd4 chromodomain helicase DNA binding protein 4 ISO mRNA:increased expression:breast (human) RGD PMID:28486105 RGD:153323299 NCBI chr 4:157,898,503...157,931,632
Ensembl chr 4:157,899,391...157,931,541 		JBrowse link
G Chek2 checkpoint kinase 2 susceptibility ISO DNA:missense mutations:p.I157T and p.S428F
ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Cancer breast | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, somatic | ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Cancer breast | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, somatic | ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, early-onset | ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant tumor of breast
DNA:loss of heterozygosity		 ClinVar
RGD		 PMID:2936834 PMID:3313277 PMID:9536098 PMID:10617473 PMID:11053450 More... RGD:2289703, RGD:2289706 NCBI chr12:45,788,823...45,821,382
Ensembl chr12:45,788,827...45,821,286 		JBrowse link
G Chi3l1 chitinase 3 like 1 severity ISO protein:increased secretion:serum (human) RGD PMID:12889595 RGD:4892603 NCBI chr13:45,641,802...45,649,787
Ensembl chr13:45,641,802...45,649,787 		JBrowse link
G Clu clusterin disease_progression ISO DNA:snp:promoter:g.27611345C>G (rs9331888) (human) RGD PMID:22037783 RGD:8963167 NCBI chr15:40,161,068...40,200,315
Ensembl chr15:40,174,617...40,200,315 		JBrowse link
G Comt catechol-O-methyltransferase disease_progression
susceptibility
no_association		 ISO DNA:polymorphism: :p.V158M
mRNA:increased expression:breast		 RGD PMID:17429315 PMID:17507616 PMID:17562079 PMID:15285606 RGD:2289715, RGD:2289712, RGD:2289710, RGD:2289721 NCBI chr11:82,568,052...82,587,642
Ensembl chr11:82,568,025...82,587,642 		JBrowse link
G Crp C-reactive protein ISO protein:increased expression:nipple aspirate fluid RGD PMID:21139810 RGD:9491787 NCBI chr13:85,135,384...85,175,178
Ensembl chr13:85,124,977...85,175,178 		JBrowse link
G Csf1 colony stimulating factor 1 ISO RGD PMID:18172291 RGD:2293639 NCBI chr 2:195,377,215...195,396,608
Ensembl chr 2:195,377,215...195,411,704 		JBrowse link
G Csf1r colony stimulating factor 1 receptor disease_progression
treatment		 ISO RGD PMID:14734466 PMID:25385645 RGD:2293711, RGD:150524304 NCBI chr18:54,546,673...54,590,418
Ensembl chr18:54,546,659...54,590,415 		JBrowse link
G Csnk2a1 casein kinase 2 alpha 1 ISO RGD PMID:11827167 RGD:727632 NCBI chr 3:140,709,984...140,756,757
Ensembl chr 3:140,709,991...140,756,696 		JBrowse link
G Ctcf CCCTC-binding factor severity ISO protein:alternative form, increased expression:breast tumor (human) RGD PMID:19737964 RGD:151356756 NCBI chr19:33,521,726...33,571,124
Ensembl chr19:33,529,319...33,571,123 		JBrowse link
G Ctla4 cytotoxic T-lymphocyte-associated protein 4 ISO protein:increased expression:serum:
DNA:SPNs:multiple:		 RGD PMID:20482250 PMID:17825114 RGD:7411684, RGD:7421502 NCBI chr 9:62,318,874...62,325,978
Ensembl chr 9:62,319,312...62,324,963 		JBrowse link
G Ctsb cathepsin B ISO protein:increased expression:breast carcinoma, cytosol (human) RGD PMID:9508185 RGD:2315523 NCBI chr15:37,389,636...37,410,508
Ensembl chr15:37,389,629...37,410,500 		JBrowse link
G Ctsd cathepsin D ISO human gene in a mouse model RGD PMID:12140763 RGD:1547890 NCBI chr 1:197,527,467...197,539,343
Ensembl chr 1:197,527,467...197,539,488 		JBrowse link
G Cyb5r3 cytochrome b5 reductase 3 susceptibility ISO DNA:polymporhism:(rs8190370)(human) RGD PMID:25225034 RGD:11040537 NCBI chr 7:114,306,686...114,324,247
Ensembl chr 7:114,306,685...114,324,298 		JBrowse link
G Cyp17a1 cytochrome P450, family 17, subfamily a, polypeptide 1 ISO DNA:transition:5' utr:-34T>C rs743572 (human)
ClinVar Annotator: match by term: Breast cancer, susceptibility to		 ClinVar
RGD		 PMID:1740503 PMID:10720067 PMID:14747197 PMID:16121340 PMID:17192295 More... RGD:4889142 NCBI chr 1:245,535,462...245,543,148
Ensembl chr 1:245,535,462...245,541,573 		JBrowse link
G Cyp19a1 cytochrome P450, family 19, subfamily a, polypeptide 1 treatment ISO DNA:repeat::(TTTA)10 (human)
DNA:SNP:cds:rs700518 (human)		 RGD PMID:16875543 PMID:7053713 PMID:23643682 RGD:2301046, RGD:7257716, RGD:7257707 NCBI chr 8:54,552,978...54,580,375
Ensembl chr 8:54,553,165...54,580,758 		JBrowse link
G Cyp1a1 cytochrome P450, family 1, subfamily a, polypeptide 1 no_association ISO DNA:SNP::rs4646903 (human)
DNA:polymorphisms: :multiple
DNA:transitions:exon, 3' utr:4889A>G, 6235T>C (human)
DNA:SNP: :p.I462V (rs1048943) (human)
DNA:SNP:3' utr:6235T>C (human)		 RGD PMID:18497059 PMID:9426059 PMID:12496044 PMID:17603290 PMID:21418988 RGD:2301045, RGD:8552810, RGD:8552799, RGD:8552794, RGD:8552792 NCBI chr 8:58,096,021...58,102,130
Ensembl chr 8:58,096,077...58,102,125 		JBrowse link
G Cyp1a2 cytochrome P450, family 1, subfamily a, polypeptide 2 ISO RGD PMID:18497059 RGD:2301045 NCBI chr 8:58,075,367...58,082,255
Ensembl chr 8:58,075,367...58,082,312 		JBrowse link
G Cyp1b1 cytochrome P450, family 1, subfamily b, polypeptide 1 susceptibility ISO DNA:snp:cds:p.A119S (human) RGD PMID:10739169 RGD:7829734 NCBI chr 6:15,342,312...15,350,886
Ensembl chr 6:15,342,344...15,350,917 		JBrowse link
G Cyp2c6 cytochrome P450, family 2, subfamily C, polypeptide 6 treatment ISO DNA:haplotype: : RGD PMID:26799162 RGD:124713411 NCBI chr 1:237,938,521...237,976,238
Ensembl chr 1:237,693,094...238,057,596 		JBrowse link
G Cyp3a2 cytochrome P450, family 3, subfamily a, polypeptide 2 no_association ISO RGD PMID:15180491 RGD:5685600 NCBI chr12:9,207,978...9,230,064
Ensembl chr12:9,015,383...9,285,008 		JBrowse link
G Ddr1 discoidin domain receptor tyrosine kinase 1 ISO mRNA, protein:increased expression:breast cancer tissue (human) RGD PMID:31578591 RGD:151347435 NCBI chr20:3,042,494...3,064,442
Ensembl chr20:3,044,320...3,064,468 		JBrowse link
G Ddx3x DEAD-box helicase 3, X-linked exacerbates ISO protein:increased expression:breast, nucleus (human) RGD PMID:28761359 RGD:151356502 NCBI chr  X:9,479,532...9,493,169
Ensembl chr  X:9,479,532...9,493,168 		JBrowse link
G Dicer1 dicer 1 ribonuclease III ISO ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:25741868 PMID:28492532 PMID:32714280 NCBI chr 6:123,627,529...123,692,278
Ensembl chr 6:123,631,250...123,693,965 		JBrowse link
G Dll4 delta like canonical Notch ligand 4 disease_progression ISO RGD PMID:20167860 RGD:155641260 NCBI chr 3:106,317,114...106,327,004
Ensembl chr 3:106,316,986...106,326,931 		JBrowse link
G Dusp1 dual specificity phosphatase 1 disease_progression
severity		 ISO protein:increased expression:T cell
protein:increased expression:mammary gland
DNA:hypermethylation:promoter		 RGD PMID:9724088 PMID:12618338 PMID:19417026 PMID:22333693 RGD:2298697, RGD:7495809, RGD:7495851, RGD:7495850 NCBI chr10:16,680,478...16,683,275 JBrowse link
G Dusp6 dual specificity phosphatase 6 ISO protein:increased expression:mammary gland RGD PMID:12618338 RGD:7495809 NCBI chr 7:34,092,848...34,097,186
Ensembl chr 7:34,092,943...34,097,185 		JBrowse link
G Ebag9 estrogen receptor binding site associated antigen 9 ISO DNA:amplification RGD PMID:12160478 RGD:2289857 NCBI chr 7:75,810,950...75,828,902
Ensembl chr 7:75,810,594...75,861,248 		JBrowse link
G Egfr epidermal growth factor receptor ISO mRNA:increased expression:breast RGD PMID:17465220 RGD:2289949 NCBI chr14:91,176,979...91,349,722
Ensembl chr14:91,177,067...91,344,382 		JBrowse link
G Egr1 early growth response 1 ISO
IEP		 protein:decreased expression:tumor (human)
protein:decreased expression:tumor (rat)		 RGD PMID:9212230 PMID:9212230 RGD:5131943, RGD:5131943 NCBI chr18:26,462,967...26,466,766
Ensembl chr18:26,462,981...26,466,766 		JBrowse link
G Eif3h eukaryotic translation initiation factor 3, subunit H ISO DNA:amplification RGD PMID:10362802 RGD:2289902 NCBI chr 7:83,091,037...83,174,451
Ensembl chr 7:83,091,039...83,174,451 		JBrowse link
G Eng endoglin treatment ISO human tumor in mouse model RGD PMID:11691802 RGD:7248784 NCBI chr 3:15,934,566...15,972,618
Ensembl chr 3:15,934,518...15,973,230 		JBrowse link
G Epo erythropoietin ISO protein:increased expression:breast: RGD PMID:12118093 RGD:11041669 NCBI chr12:19,204,258...19,207,948
Ensembl chr12:19,204,508...19,207,946 		JBrowse link
G Epor erythropoietin receptor ISO protein:increased expression:breast: RGD PMID:12118093 RGD:11041669 NCBI chr 8:20,489,678...20,494,257
Ensembl chr 8:20,489,678...20,494,257 		JBrowse link
G Erbb2 erb-b2 receptor tyrosine kinase 2 ISS OMIM:114480 MouseDO NCBI chr10:83,411,197...83,435,078
Ensembl chr10:83,411,313...83,435,078 		JBrowse link
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit susceptibility ISO DNA:snp:3' utr:c.8092C>A (human) RGD PMID:15958648 RGD:13207317 NCBI chr 1:78,971,310...79,007,963
Ensembl chr 1:78,996,390...79,007,963 		JBrowse link
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit susceptibility ISO DNA:haplotype:cds:6540G>A(D312N),18880A>C(p.K751Q)(human) RGD PMID:15598761 RGD:12880387 NCBI chr 1:79,033,342...79,047,102
Ensembl chr 1:79,033,326...79,047,102 		JBrowse link
G Espl1 extra spindle pole bodies like 1, separase ISS OMIM:114480 MouseDO NCBI chr 7:133,424,027...133,450,984
Ensembl chr 7:133,424,130...133,450,984 		JBrowse link
G Esr1 estrogen receptor 1 susceptibility
no_association
disease_progression
treatment		 ISO
ISS		 DNA:SNPs, haplotypes:promoter, exon
OMIM:114480
DNA:SNP: :908A>G (p.K303R) (human)
DNA:SNP:exon:2014G>A (human)
DNA:amplification
DNA:SNPs: :rs2234693, rs9340799 (human)		 OMIM
MouseDO
RGD		 PMID:15604249 PMID:15034868 PMID:17553133 PMID:19636371 PMID:19320640 More... RGD:8552978, RGD:8553053, RGD:8553052, RGD:8552982, RGD:8552981, RGD:8552980, RGD:8552979 NCBI chr 1:41,106,335...41,499,104
Ensembl chr 1:41,210,475...41,495,002 		JBrowse link
G Esr2 estrogen receptor 2 treatment
susceptibility
no_association		 IDA
ISO		 DNA:silent mutation:exon:g.1176C>G (rs1256054) (human)
DNA:snps:multiple (human)
DNA:snps:intron, exon:g.14206C>T, g.33390C>G (rs1256054) (human)
DNA:snps, haplotype:multiple (human)
DNA:repeat:intron:IVS5(CA)9-31 (human)
DNA:snps, haplotype:exons:g.1082G>A, g.1730G>A, A>G (rs1256049, rs4986938, rs928554) (human)
DNA:snps:5' utr, exon, 3' utr:-12214C>T (rs1271572), A>G (rs928554), A>G (rs4986938) (human)
associated with Benign Breast Disease;DNA:snp:3' utr:*5772A>G (rs8018687) (human)
DNA:snp:promoter:g.-13950C>T (rs2987983) (human)
DNA:repeat:3' utr:(CA)10-27 (human)		 RGD PMID:23700476 PMID:20604969 PMID:19321582 PMID:14633679 PMID:15604249 More... RGD:7364946, RGD:8694116, RGD:8694110, RGD:8694103, RGD:8552978, RGD:8694096, RGD:8694090, RGD:8693382, RGD:8693380, RGD:8693347, RGD:8552977 NCBI chr 6:94,858,438...94,909,630
Ensembl chr 6:94,809,547...94,908,919 		JBrowse link
G Ext1 exostosin glycosyltransferase 1 ISO ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:28492532 NCBI chr 7:84,375,769...84,654,625
Ensembl chr 7:84,375,784...84,655,357 		JBrowse link
G F10 coagulation factor X ISO DNA:SNP: :rs3093261 (human) RGD PMID:25407022 RGD:10449101 NCBI chr16:76,468,834...76,488,141
Ensembl chr16:76,468,838...76,488,141 		JBrowse link
G F11r F11 receptor disease_progression ISO RGD PMID:19533747 RGD:7488915 NCBI chr13:83,873,797...83,897,388
Ensembl chr13:83,873,797...83,897,402 		JBrowse link
G F5 coagulation factor V no_association ISO DNA:SNPs: :multiple
DNA:SNPs: :rs6025 (human)		 RGD PMID:25407022 PMID:25407022 RGD:10449101, RGD:10449101 NCBI chr13:76,513,509...76,583,106
Ensembl chr13:76,513,255...76,582,317 		JBrowse link
G F7 coagulation factor VII ISO mRNA:increased expression:breast (human) RGD PMID:19996301 RGD:11049547 NCBI chr16:76,489,775...76,500,636
Ensembl chr16:76,489,717...76,500,610 		JBrowse link
G Fanca FA complementation group A ISO DNA:missense mutations, SNP:exon, 5' utr:p.T266A (c.796A>G, rs7190823), p.G501S (c.1501G>A, rs2239359), c.-1C>A (human)
ClinVar Annotator: match by term: Malignant tumor of breast		 ClinVar
RGD		 PMID:24728327 PMID:25741868 PMID:28492532 PMID:23021409 RGD:11344892 NCBI chr19:51,304,126...51,362,586
Ensembl chr19:51,304,021...51,362,527 		JBrowse link
G Fancb FA complementation group B ISO ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:25741868 PMID:28492532 PMID:33558524 NCBI chr  X:29,403,771...29,420,484
Ensembl chr  X:29,403,771...29,420,192 		JBrowse link
G Fancc FA complementation group C ISO DNA:mutations:exons:
ClinVar Annotator: match by term: Malignant tumor of breast		 ClinVar
RGD		 PMID:7492758 PMID:7689011 PMID:8081385 PMID:08128956 PMID:08348157 More... RGD:11046263 NCBI chr17:1,680,660...1,822,610
Ensembl chr17:1,681,324...1,829,376 		JBrowse link
G Fancd2 FA complementation group D2 ISO ClinVar Annotator: match by term: Malignant tumor of breast
DNA:SNP, haplotype: :rs2272125 (human)		 ClinVar
RGD		 PMID:24728327 PMID:25741868 PMID:28492532 PMID:33558524 PMID:23897704 More... RGD:10769361, RGD:11344909 NCBI chr 4:146,679,014...146,743,422
Ensembl chr 4:146,679,179...146,743,412 		JBrowse link
G Fance FA complementation group E ISO ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:25741868 PMID:28492532 NCBI chr20:6,369,416...6,386,631
Ensembl chr20:6,375,573...6,386,631 		JBrowse link
G Fancf FA complementation group F ISO ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:24728327 PMID:25741868 PMID:28492532 NCBI chr 1:101,449,120...101,451,936
Ensembl chr 1:101,450,389...101,451,923 		JBrowse link
G Fanci FA complementation group I ISO ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:25741868 PMID:28492532 PMID:33558524 NCBI chr 1:133,327,264...133,383,661
Ensembl chr 1:133,327,297...133,383,640 		JBrowse link
G Fas Fas cell surface death receptor susceptibility ISO DNA:polymorphism:promoter:-1377G>A RGD PMID:17183065 RGD:2290054 NCBI chr 1:231,798,963...231,832,591
Ensembl chr 1:231,798,960...231,832,591 		JBrowse link
G Fen1 flap structure-specific endonuclease 1 disease_progression ISO DNA,mRNA:hypomethylation,increased expression:promoter,breast RGD PMID:19010819 RGD:6484520 NCBI chr 1:206,845,126...206,849,821
Ensembl chr 1:206,844,884...206,850,003 		JBrowse link
G Fgf2 fibroblast growth factor 2 disease_progression
susceptibility		 ISO protein:increased expression:mammary gland fluid/secretion RGD PMID:14715109 PMID:12184408 RGD:8655549, RGD:8655587 NCBI chr 2:120,236,328...120,290,673
Ensembl chr 2:120,236,328...120,291,221 		JBrowse link
G Fgf8 fibroblast growth factor 8 ISO RGD PMID:10023681 RGD:2289344 NCBI chr 1:244,584,477...244,590,578
Ensembl chr 1:244,584,652...244,590,359 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 exacerbates ISO RGD PMID:17529973 PMID:23185502 PMID:17529967 RGD:2289658, RGD:155663674, RGD:2289657 NCBI chr 1:184,745,418...184,850,655
Ensembl chr 1:184,745,420...184,850,626 		JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 ISO RGD PMID:11329138 RGD:2289867 NCBI chr14:76,987,242...77,002,671
Ensembl chr14:76,987,993...77,003,341 		JBrowse link
G Fh fumarate hydratase ISO ClinVar Annotator: match by term: Malignant tumor of breast ClinVar NCBI chr13:87,524,331...87,550,215
Ensembl chr13:87,524,337...87,550,266 		JBrowse link
G Flt1 Fms related receptor tyrosine kinase 1 IEP protein:increased expression:mammary carcinoma cells RGD PMID:10604730 RGD:2289937 NCBI chr12:7,296,899...7,468,626
Ensembl chr12:7,297,292...7,468,626 		JBrowse link
G Foxa1 forkhead box A1 disease_progression ISO RGD PMID:27524420 RGD:151665821 NCBI chr 6:75,099,907...75,136,534
Ensembl chr 6:75,103,503...75,136,188 		JBrowse link
G Fubp1 far upstream element binding protein 1 exacerbates ISO protein:increased expression:breast (human) RGD PMID:27157613 RGD:151361193 NCBI chr 2:241,159,481...241,186,591
Ensembl chr 2:241,159,512...241,186,602 		JBrowse link
G Ghr growth hormone receptor ISO protein:increased expression:serum:cases versus controls (p<0.01) (human) RGD PMID:17287408 RGD:2301716 NCBI chr 2:52,541,452...52,804,960
Ensembl chr 2:52,542,594...52,804,735 		JBrowse link
G Ghrh growth hormone releasing hormone ISO protein:increased expression:tumor:colloid, lobular, and infiltrating ductal carcinomas RGD PMID:1973621 RGD:2289972 NCBI chr 3:145,992,762...146,012,528
Ensembl chr 3:145,992,763...146,011,889 		JBrowse link
G Gnrh1 gonadotropin releasing hormone 1 severity ISO RGD PMID:17692113 RGD:2292541 NCBI chr15:41,972,482...41,976,690
Ensembl chr15:41,972,905...41,973,581
Ensembl chr15:41,972,905...41,973,581 		JBrowse link
G Gpx1 glutathione peroxidase 1 susceptibility ISO DNA:repeat:CDS: (human) RGD PMID:14744747 RGD:152995457 NCBI chr 8:109,026,905...109,028,031
Ensembl chr 8:109,026,905...109,028,024 		JBrowse link
G Grb2 growth factor receptor bound protein 2 treatment ISO RGD PMID:17372910 RGD:13504751 NCBI chr10:100,881,404...100,949,193
Ensembl chr10:100,869,718...100,949,309 		JBrowse link
G Gstm1 glutathione S-transferase mu 1 treatment ISO RGD PMID:23812950 PMID:15302996 RGD:10755330, RGD:14700967 NCBI chr 2:195,649,845...195,655,402
Ensembl chr 2:195,649,845...195,655,411 		JBrowse link
G Gstp1 glutathione S-transferase pi 1 treatment ISO DNA:SNP:cds:p.I105V (rs1695) (human) RGD PMID:23812950 RGD:10755330 NCBI chr 1:201,337,762...201,340,230
Ensembl chr 1:201,321,672...201,340,226 		JBrowse link
G Gstt1 glutathione S-transferase theta 1 susceptibility ISO DNA:deletion RGD PMID:10564681 RGD:2293799 NCBI chr20:12,856,613...12,873,586
Ensembl chr20:12,856,669...12,873,585 		JBrowse link
G H19 H19 imprinted maternally expressed transcript susceptibility ISO DNA:SNP RGD PMID:18708391 RGD:2306170 NCBI chr 1:197,730,698...197,733,374
Ensembl chr 1:197,730,698...197,733,134 		JBrowse link
G Hfe homeostatic iron regulator susceptibility
no_association		 ISO DNA:missense mutation:cds:p.C282Y (human)
DNA:missense mutations, haplotype:cds:p.H63D, p.S65C, p.C282Y (human)		 RGD PMID:14973098 PMID:15894659 RGD:8694348, RGD:8694349 NCBI chr17:41,413,451...41,421,502
Ensembl chr17:41,413,451...41,421,502 		JBrowse link
G Hgf hepatocyte growth factor ISS OMIM:114480 MouseDO NCBI chr 4:18,673,736...18,745,582
Ensembl chr 4:18,677,101...18,745,409 		JBrowse link
G Hmmr hyaluronan-mediated motility receptor susceptibility ISO ClinVar Annotator: match by term: Breast cancer, susceptibility to ClinVar
OMIM		 PMID:25741868 NCBI chr10:25,132,933...25,163,029
Ensembl chr10:25,132,977...25,163,060 		JBrowse link
G Icam1 intercellular adhesion molecule 1 ISO protein:increased expression:serum: RGD PMID:7686390 RGD:11520780 NCBI chr 8:19,553,063...19,565,438
Ensembl chr 8:19,553,645...19,565,438 		JBrowse link
G Ifng interferon gamma susceptibility ISO DNA:repeats:intron: RGD PMID:15900487 RGD:8157615 NCBI chr 7:53,903,339...53,907,375
Ensembl chr 7:53,903,337...53,907,375 		JBrowse link
G Igf1 insulin-like growth factor 1 susceptibility IEP protein:increased expression:serum (rat) RGD PMID:17584969 RGD:2315650 NCBI chr 7:22,282,895...22,361,972
Ensembl chr 7:22,282,930...22,359,296 		JBrowse link
G Igf1r insulin-like growth factor 1 receptor ISO protein: increased expression RGD PMID:21047775 RGD:7242794 NCBI chr 1:121,549,831...121,838,548
Ensembl chr 1:121,550,743...121,831,777 		JBrowse link
G Igf2 insulin-like growth factor 2 ISO RGD PMID:18719053 RGD:2311512 NCBI chr 1:197,814,409...197,831,802
Ensembl chr 1:197,814,410...197,823,018 		JBrowse link
G Igfbp1 insulin-like growth factor binding protein 1 no_association ISO higher serum expression in cases vs controls but association not significant in multivariate analysis (human)
protein:decreased expression:serum:in patients with breast cancer versus benign breast disease (p=0.001) (human)		 RGD PMID:17287408 PMID:10069662 RGD:2301716, RGD:2301715 NCBI chr14:82,047,415...82,052,482
Ensembl chr14:82,047,415...82,052,482 		JBrowse link
G Igfbp3 insulin-like growth factor binding protein 3 no_association ISO protein:decreased expression:serum RGD PMID:15298948 PMID:10069662 PMID:17287408 PMID:12925957 RGD:2290011, RGD:2301715, RGD:2301716, RGD:2290009 NCBI chr14:82,056,347...82,064,083
Ensembl chr14:82,056,347...82,064,083 		JBrowse link
G Igfbp6 insulin-like growth factor binding protein 6 no_association ISO lower serum expression in cases vs controls but association not significant in multivariate analysis (human)
protein:decreased expression:serum:in patients with breast cancer versus benign breast disease (p=0.016) (human)		 RGD PMID:17287408 PMID:10069662 RGD:2301716, RGD:2301715 NCBI chr 7:133,276,309...133,280,944
Ensembl chr 7:133,276,234...133,280,966 		JBrowse link
G Igfbp7 insulin-like growth factor binding protein 7 ameliorates ISO protein:decreased expression:breast (human) RGD PMID:34606580 RGD:401960874 NCBI chr14:30,737,414...30,797,317
Ensembl chr14:30,737,164...30,797,314 		JBrowse link
G Ikbkb inhibitor of nuclear factor kappa B kinase subunit beta susceptibility ISO DNA:SNPs: :multiple RGD PMID:22562547 RGD:6484541 NCBI chr16:69,319,487...69,373,251
Ensembl chr16:69,319,554...69,373,250 		JBrowse link
G Il13ra2 interleukin 13 receptor subunit alpha 2 treatment ISO RGD PMID:11748276 PMID:17438063 RGD:8549514, RGD:8549557 NCBI chr  X:111,002,590...111,074,053
Ensembl chr  X:111,002,592...111,072,381 		JBrowse link
G Il18 interleukin 18 no_association ISO protein:increased expression:serum
DNA:SNP:promoter:-607C>A (rs1946518) (human)
DNA:SNP:promoter:-137G>C (rs187238) (human)		 RGD PMID:12209760 PMID:19152241 PMID:19152241 RGD:8655866, RGD:8655899, RGD:8655899 NCBI chr 8:50,904,630...50,932,887
Ensembl chr 8:50,906,960...50,932,887 		JBrowse link
G Il1b interleukin 1 beta susceptibility ISO DNA:polymorphism:promoter:-31T>C (human) RGD PMID:21653279 RGD:7401222 NCBI chr 3:116,577,005...116,583,386
Ensembl chr 3:116,577,010...116,583,415 		JBrowse link
G Il6 interleukin 6 susceptibility ISO DNA:polymorphism::rs2069832(human) RGD PMID:17594514 RGD:7829720 NCBI chr 4:5,214,602...5,219,178
Ensembl chr 4:5,213,394...5,219,178 		JBrowse link
G Insr insulin receptor severity ISO protein:increased expression:tumor:higher expression associated with favorable prognostic markers and increased disease-free survival (P=0.027) RGD PMID:17221153 PMID:8518410 RGD:2290447, RGD:2290465 NCBI chr12:1,193,193...1,330,976
Ensembl chr12:1,197,100...1,330,883 		JBrowse link
G Itga1 integrin subunit alpha 1 ISO protein:decreased expression:tumor:down-regulated in tumors lacking a basement membrane (human) RGD PMID:9408292 RGD:2302120 NCBI chr 2:46,646,125...46,812,237
Ensembl chr 2:46,653,193...46,812,238 		JBrowse link
G Jun Jun proto-oncogene, AP-1 transcription factor subunit ISO RGD PMID:16733206 RGD:2290479 NCBI chr 5:109,894,175...109,897,268
Ensembl chr 5:109,893,145...109,897,656 		JBrowse link
G Kat2b lysine acetyltransferase 2B severity ISO mRNA:increased expression:breast (human) RGD PMID:22199269 RGD:9586031 NCBI chr 9:6,562,525...6,667,064
Ensembl chr 9:6,562,288...6,667,064 		JBrowse link
G Kat5 lysine acetyltransferase 5 severity ISO mRNA:altered expression:breast (human) RGD PMID:22199269 RGD:9586031 NCBI chr 1:202,895,751...202,903,178
Ensembl chr 1:202,895,751...202,903,458 		JBrowse link
G Kat6b lysine acetyltransferase 6B ISO DNA:missense mutations:cds:p.D1516Y, p.R1577C (human) RGD PMID:23800003 RGD:9590339 NCBI chr15:2,638,885...2,811,977
Ensembl chr15:2,639,200...2,812,316 		JBrowse link
G Kat7 lysine acetyltransferase 7 severity ISO protein:increased expression:breast (human) RGD PMID:21040551 RGD:9681004 NCBI chr10:80,221,519...80,255,590
Ensembl chr10:80,221,524...80,255,567 		JBrowse link
G Kat8 lysine acetyltransferase 8 severity ISO mRNA:increased expression:breast (human) RGD PMID:22199269 RGD:9586031 NCBI chr 1:182,524,355...182,536,638
Ensembl chr 1:182,515,327...182,536,633 		JBrowse link
G Kdm1a lysine demethylase 1A severity ISO
IEP		 mRNA:increased expression:breast (human)
protein:increased expression:breast (rat)		 RGD PMID:22199269 PMID:23516587 RGD:9586031, RGD:9588313 NCBI chr 5:148,782,976...148,838,319
Ensembl chr 5:148,782,976...148,838,319 		JBrowse link
G Kdm3b lysine demethylase 3B severity ISO mRNA:decreased expression:breast (human) RGD PMID:23266085 RGD:9586731 NCBI chr18:26,380,859...26,436,701
Ensembl chr18:26,380,964...26,436,628 		JBrowse link
G Kdm4a lysine demethylase 4A severity ISO mRNA:altered expression:breast (human) RGD PMID:22199269 RGD:9586031 NCBI chr 5:131,672,754...131,719,534
Ensembl chr 5:131,672,754...131,719,501 		JBrowse link
G Kdm4b lysine demethylase 4B severity
treatment		 ISO mRNA:decreased expression:breast (human)
human gene in a mouse model		 RGD PMID:21445275 PMID:21445275 RGD:9587754, RGD:9587754 NCBI chr 9:1,158,737...1,237,233
Ensembl chr 9:1,158,752...1,236,543 		JBrowse link
G Kdm4c lysine demethylase 4C severity ISO DNA:snp:cds:p.D396N (rs2296067) (human) RGD PMID:24952432 RGD:9587745 NCBI chr 5:88,100,710...88,306,821
Ensembl chr 5:88,100,733...88,306,818 		JBrowse link
G Kdm5a lysine demethylase 5A severity ISO mRNA:decreased expression:breast (human) RGD PMID:23266085 RGD:9586731 NCBI chr 4:153,565,909...153,643,912
Ensembl chr 4:153,565,846...153,642,422 		JBrowse link
G Kdm5b lysine demethylase 5B treatment ISO human gene in a mouse model RGD PMID:21369698 RGD:9587774 NCBI chr13:46,001,589...46,073,868
Ensembl chr13:46,002,542...46,073,872 		JBrowse link
G Kdm5c lysine demethylase 5C severity ISO mRNA:altered expression:breast (human) RGD PMID:22199269 RGD:9586031 NCBI chr  X:21,345,459...21,387,045
Ensembl chr  X:21,345,481...21,381,870 		JBrowse link
G Kdm6a lysine demethylase 6A severity ISO mRNA:increased expression:breast (human) RGD PMID:22199269 PMID:23266085 RGD:9586031 RGD:9586731 NCBI chr  X:4,337,466...4,477,100
Ensembl chr  X:4,337,750...4,477,062 		JBrowse link
G Kdm8 lysine demethylase 8 ISO mRNA:increased expression:breast (human) RGD PMID:20457893 RGD:9587844 NCBI chr 1:180,013,969...180,028,829
Ensembl chr 1:180,020,656...180,028,841 		JBrowse link
G Kdr kinase insert domain receptor ISO RGD PMID:10371349 RGD:2291951 NCBI chr14:32,217,871...32,261,018
Ensembl chr14:32,217,871...32,261,018 		JBrowse link
G Kif1b kinesin family member 1B ISO ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:18334619 PMID:24469107 PMID:24694336 PMID:25741868 PMID:28492532 NCBI chr 5:159,607,697...159,742,778
Ensembl chr 5:159,561,271...159,742,778 		JBrowse link
G Kiss1r KISS1 receptor severity ISO RGD PMID:17914099 RGD:2292123 NCBI chr 7:9,785,135...9,790,283
Ensembl chr 7:9,785,135...9,788,793 		JBrowse link
G Klc1 kinesin light chain 1 ISO ClinVar Annotator: match by term: Breast cancer, susceptibility to ClinVar PMID:12023982 NCBI chr 6:130,823,416...130,866,729
Ensembl chr 6:130,823,419...130,867,031 		JBrowse link
G Klk1c10 kallikrein 1-related peptidase C10 ISO protein:increased expression:serum:in patients with breast cancer versus benign breast disease (p=0.025) RGD PMID:10069662 RGD:2301715 NCBI chr 1:94,402,993...94,407,052
Ensembl chr 1:94,402,993...94,407,052 		JBrowse link
G Klk4 kallikrein-related peptidase 4 disease_progression
severity		 ISO mRNA, protein:increased expression:breast RGD PMID:18687310 PMID:19190825 RGD:2314853, RGD:2314852 NCBI chr 1:94,344,195...94,349,425
Ensembl chr 1:94,344,195...94,349,424 		JBrowse link
G Kmt2b lysine methyltransferase 2B severity ISO mRNA:increased expression:breast (human) RGD PMID:24491801 RGD:9588564 NCBI chr 1:85,821,700...85,840,987
Ensembl chr 1:85,821,753...85,841,326 		JBrowse link
G Kmt2d lysine methyltransferase 2D ISO mRNA:decreased expression:breast (human) RGD PMID:23754336 RGD:9588236 NCBI chr 7:129,980,744...130,022,088
Ensembl chr 7:129,962,887...130,020,325 		JBrowse link
G Kmt2e lysine methyltransferase 2E ISO mRNA:decreased expression:breast (human) RGD PMID:23754336 RGD:9588236 NCBI chr 4:11,658,218...11,727,373
Ensembl chr 4:11,658,979...11,727,373 		JBrowse link
G Kras KRAS proto-oncogene, GTPase ISO ClinVar Annotator: match by term: Breast cancer, somatic ClinVar
OMIM
RGD		 PMID:2278970 PMID:2547513 PMID:3122217 PMID:3627975 PMID:12460918 More... RGD:2314909 NCBI chr 4:178,185,418...178,218,484 JBrowse link
G Krt81 keratin 81 susceptibility ISO DNA:SNP:3'UTR:rs3660(human) RGD PMID:32678982 RGD:155882455 NCBI chr 7:132,577,112...132,582,238
Ensembl chr 7:132,576,492...132,582,170 		JBrowse link
G Ksr1 kinase suppressor of ras 1 disease_progression ISO RGD PMID:24909178 RGD:127229932 NCBI chr10:63,961,771...64,098,076
Ensembl chr10:63,961,759...64,098,076 		JBrowse link
G L3mbtl1 L3MBTL histone methyl-lysine binding protein 1 severity ISO mRNA:decreased expression:breast (human) RGD PMID:21837478 RGD:9588606 NCBI chr 3:151,597,903...151,633,657
Ensembl chr 3:151,602,980...151,631,233 		JBrowse link
G Lep leptin ISO protein:increased expression:serum RGD PMID:16019138 RGD:8694425 NCBI chr 4:57,661,127...57,675,262
Ensembl chr 4:57,661,131...57,675,262 		JBrowse link
G Letmd1 LETM1 domain containing 1 ISO protein:increased expression:breast RGD PMID:19208263 RGD:2314917 NCBI chr 7:131,584,241...131,597,797
Ensembl chr 7:131,584,259...131,597,796 		JBrowse link
G Lhcgr luteinizing hormone/choriogonadotropin receptor severity
onset		 ISO RGD PMID:17692113 PMID:12679452 PMID:17709176 RGD:2292541, RGD:2292545, RGD:2292539 NCBI chr 6:5,661,871...5,728,109
Ensembl chr 6:5,661,871...5,724,521 		JBrowse link
G Lnpep leucyl and cystinyl aminopeptidase ISO protein:increased expression:breast RGD PMID:10508127 RGD:2314923 NCBI chr 1:58,258,642...58,355,532
Ensembl chr 1:58,258,642...58,354,544 		JBrowse link
G Lta lymphotoxin alpha susceptibility ISO DNA:polymorphism, haplotype: :252A>G (human)
DNA:SNP:intron		 RGD PMID:18409070 PMID:11841482 RGD:8548786, RGD:8548791 NCBI chr20:3,618,853...3,621,324
Ensembl chr20:3,618,853...3,620,859 		JBrowse link
G Manf mesencephalic astrocyte-derived neurotrophic factor susceptibility ISO RGD PMID:8971156 RGD:1599219 NCBI chr 8:107,500,856...107,551,595
Ensembl chr 8:107,548,352...107,551,438 		JBrowse link
G Map2k1 mitogen activated protein kinase kinase 1 ISO RGD PMID:10216485 RGD:2292627 NCBI chr 8:64,683,449...64,754,900
Ensembl chr 8:64,683,449...64,755,147 		JBrowse link
G Map2k2 mitogen activated protein kinase kinase 2 ISO RGD PMID:10216485 RGD:2292627 NCBI chr 7:8,590,729...8,610,279
Ensembl chr 7:8,580,905...8,610,243 		JBrowse link
G Map2k3 mitogen activated protein kinase kinase 3 ISO protein:increased protein:mammary gland RGD PMID:24233520 PMID:12618338 RGD:7495808, RGD:7495809 NCBI chr10:45,608,145...45,629,492
Ensembl chr10:45,607,163...45,629,492 		JBrowse link
G Map2k7 mitogen activated protein kinase kinase 7 exacerbates ISO mRNA:splice variant:exon 2: (human) RGD PMID:32601196 PMID:21317887 RGD:155230826, RGD:155249848 NCBI chr12:2,591,312...2,600,534
Ensembl chr12:2,591,219...2,604,222 		JBrowse link
G Map3k1 mitogen-activated protein kinase kinase kinase 1 disease_progression ISO RGD PMID:17529967 PMID:18036273 PMID:17997823 RGD:2289657, RGD:2293356, RGD:2293357 NCBI chr 2:43,348,572...43,414,706
Ensembl chr 2:43,350,098...43,414,463 		JBrowse link
G Map3k8 mitogen-activated protein kinase kinase kinase 8 ISO RGD PMID:10490831 RGD:151356925 NCBI chr17:53,382,908...53,403,216
Ensembl chr17:53,383,131...53,403,216 		JBrowse link
G Mapk1 mitogen activated protein kinase 1 ISO protein:increased expression, increased phosphorylation:breast RGD PMID:15928662 RGD:2314939 NCBI chr11:83,957,813...84,023,629
Ensembl chr11:83,957,813...84,023,616 		JBrowse link
G Mapk15 mitogen-activated protein kinase 15 disease_progression ISO protein:decreased expression:tumor (human) RGD PMID:12917323 RGD:2304230 NCBI chr 7:107,694,907...107,714,640
Ensembl chr 7:107,694,964...107,714,645 		JBrowse link
G Mapt microtubule-associated protein tau disease_progression ISO RGD PMID:18668363 RGD:8158093 NCBI chr10:89,138,644...89,236,137
Ensembl chr10:89,138,627...89,236,129 		JBrowse link
G Mc1r melanocortin 1 receptor ISO ClinVar Annotator: match by term: Malignant breast neoplasm ClinVar PMID:9302268 PMID:9665397 PMID:10631149 PMID:12876664 PMID:15994880 More... NCBI chr19:51,452,448...51,455,375
Ensembl chr19:51,453,239...51,454,192 		JBrowse link
G Mcph1 microcephalin 1 severity ISO DNA:silent mutation, missense mutation:cds:p.S742, p.A761V (rs2912010, rs1057090) (human) RGD PMID:23296058 RGD:9589038 NCBI chr16:71,021,855...71,224,067
Ensembl chr16:71,024,588...71,224,122 		JBrowse link
G Mdm2 MDM2 proto-oncogene IEP protein:increased expression:breast tumor (rat) RGD PMID:15844214 RGD:2293626 NCBI chr 7:53,290,660...53,315,205
Ensembl chr 7:53,290,664...53,314,915 		JBrowse link
G Met MET proto-oncogene, receptor tyrosine kinase ISS OMIM:114480 MouseDO NCBI chr 4:45,790,456...45,898,139
Ensembl chr 4:45,790,791...45,897,876 		JBrowse link
G Mgmt O-6-methylguanine-DNA methyltransferase susceptibility
severity		 ISO DNA:polymorphisms:cds:p.L84F, p.I143V (human)
protein:decreased expression:tumor (human)		 RGD PMID:16014702 PMID:15741301 RGD:2317675, RGD:2317691 NCBI chr 1:191,710,980...191,937,760
Ensembl chr 1:191,710,930...191,937,756 		JBrowse link
G Mir143 microRNA 143 ISO RNA:decreased expression:peripheral blood mononuclear cell (human) RGD PMID:32104069 RGD:153297766 NCBI chr18:55,101,006...55,101,110
Ensembl chr18:55,101,006...55,101,110 		JBrowse link
G Mir145 microRNA 145 ISO RNA:increased expression:peripheral blood mononuclear cell (human) RGD PMID:32104069 RGD:153297766 NCBI chr18:55,099,640...55,099,727
Ensembl chr18:55,099,640...55,099,727 		JBrowse link
G Mir152 microRNA 152 ISO miRNA:increased expression:plasma RGD PMID:26958084 RGD:21066332 NCBI chr10:81,832,936...81,833,020
Ensembl chr10:81,832,936...81,833,020 		JBrowse link
G Mir21 microRNA 21 severity IEP
ISO		 RNA:increased expression:thoracic lymph node
RNA:increased expression:peripheral blood mononuclear cell (human)
miRNA:increased expression:breast (human)
RNA:increased expression:blood serum (human)		 RGD PMID:18812439 PMID:32157513 PMID:32104069 PMID:22638884 RGD:152998878, RGD:152025189, RGD:153297766, RGD:152998900 NCBI chr10:71,405,257...71,405,348
Ensembl chr10:71,405,257...71,405,348 		JBrowse link
G Mir221 microRNA 221 IEP RNA:increased expression:serum, thoracic lymph node,breast RGD PMID:32157513 RGD:152025189 NCBI chr  X:3,429,465...3,429,573
Ensembl chr  X:3,429,465...3,429,573 		JBrowse link
G Mir222 microRNA 222 IEP RNA:increased expression:breast RGD PMID:32157513 RGD:152025189 NCBI chr  X:3,428,904...3,429,006
Ensembl chr  X:3,428,904...3,429,006 		JBrowse link
G Mir31 microRNA 31 ISO RNA:decreased expression:peripheral blood mononuclear cell (human) RGD PMID:32104069 RGD:153297766 NCBI chr 5:103,599,038...103,599,143 JBrowse link
G Mir429 microRNA 429 IEP RNA:increased expression:serum, thoracic lymph node, breast RGD PMID:32157513 RGD:152025189 NCBI chr 5:166,647,459...166,647,543
Ensembl chr 5:166,647,459...166,647,543 		JBrowse link
G Mir494 microRNA 494 ISO RNA:decreased expression:breast RGD PMID:28055013 RGD:156430322 NCBI chr 6:128,728,710...128,728,792
Ensembl chr 6:128,728,709...128,728,793 		JBrowse link
G Mki67 marker of proliferation Ki-67 disease_progression ISO RGD PMID:22004841 PMID:21880954 RGD:6483516, RGD:6483528 NCBI chr 1:190,496,319...190,522,983
Ensembl chr 1:190,496,319...190,522,762 		JBrowse link
G Mlh1 mutL homolog 1 ISO ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast		 ClinVar PMID:8809606 PMID:9506527 PMID:9718327 PMID:10446963 PMID:10713887 More... NCBI chr 8:111,196,468...111,233,721
Ensembl chr 8:111,196,468...111,233,617 		JBrowse link
G Mlh3 mutL homolog 3 ISO ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:25741868 PMID:28492532 NCBI chr 6:104,881,483...104,917,686
Ensembl chr 6:104,881,483...104,917,728 		JBrowse link
G Mmp1 matrix metallopeptidase 1 susceptibility
disease_progression		 ISO DNA:insertion:promoter:g.-1607insG (human)
protein:decreased expression:plasma
protein:increased expression:breast, stromal cell (human)		 RGD PMID:12473595 PMID:18366705 PMID:21835023 RGD:7207138, RGD:2298552, RGD:7207143 NCBI chr 8:4,658,588...4,679,099
Ensembl chr 8:4,658,588...4,679,097 		JBrowse link
G Mmp3 matrix metallopeptidase 3 ISO RGD PMID:17058024 RGD:8693321 NCBI chr 8:4,640,397...4,653,963
Ensembl chr 8:4,640,416...4,653,961 		JBrowse link
G Mmp8 matrix metallopeptidase 8 disease_progression ISO RGD PMID:17974962 PMID:18366705 RGD:2298553, RGD:2298552 NCBI chr 8:4,724,009...4,733,864
Ensembl chr 8:4,724,029...4,733,520 		JBrowse link
G Msh2 mutS homolog 2 susceptibility ISO DNA:polymorphism:cds:p.G322D
ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, somatic | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, somatic | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant tumor of breast		 ClinVar
RGD		 PMID:8613431 PMID:8700523 PMID:9259192 PMID:9718327 PMID:10080150 More... RGD:2293512 NCBI chr 6:6,813,793...6,872,960
Ensembl chr 6:6,813,795...6,872,938 		JBrowse link
G Msh6 mutS homolog 6 ISO ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, somatic | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast		 ClinVar PMID:2968408 PMID:10508506 PMID:10537275 PMID:11153917 PMID:11586295 More... NCBI chr 6:6,562,631...6,579,995
Ensembl chr 6:6,562,632...6,579,956 		JBrowse link
G Muc1 mucin 1, cell surface associated ISO RGD PMID:8869094 RGD:7349378 NCBI chr 2:174,635,989...174,640,738
Ensembl chr 2:174,635,995...174,640,733 		JBrowse link
G Mutyh mutY DNA glycosylase ISO ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:16557584 PMID:21195604 PMID:25741868 PMID:26467025 PMID:26900293 More... NCBI chr 5:130,274,034...130,286,149
Ensembl chr 5:130,274,122...130,286,146 		JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor severity ISO
ISS
IEP		 DNA:amplification:exon (human)
OMIM:114480
protein:increased expression:mammary gland (rat)		 MouseDO
RGD		 PMID:10706127 PMID:22614519 RGD:7207838, RGD:7241002 NCBI chr 7:93,593,705...93,598,633
Ensembl chr 7:93,593,705...93,598,630 		JBrowse link
G Myd88 MYD88, innate immune signal transduction adaptor exacerbates ISO RNA:increased expression:breast (human) RGD PMID:26596839 RGD:150524333 NCBI chr 8:119,074,439...119,078,508
Ensembl chr 8:119,074,437...119,079,415 		JBrowse link
G Nbn nibrin susceptibility
disease_progression		 ISO DNA:SNP
ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
protein:decreased expression:breast
DNA:missense mutation:exon:p.I171V		 ClinVar
RGD		 PMID:9590180 PMID:9590181 PMID:9620777 PMID:10398434 PMID:10799436 More... RGD:2298991, RGD:2298993, RGD:2298992 NCBI chr 5:29,459,574...29,494,152
Ensembl chr 5:29,459,457...29,494,150 		JBrowse link
G Ncoa3 nuclear receptor coactivator 3 IDA RGD PMID:20051871 RGD:5688283 NCBI chr 3:154,738,566...154,821,395
Ensembl chr 3:154,738,581...154,818,594 		JBrowse link
G Ncoa6 nuclear receptor coactivator 6 ISO DNA:amplification:cds (human) RGD PMID:10567404 RGD:9590137 NCBI chr 3:143,890,896...143,961,916
Ensembl chr 3:143,890,896...143,952,268 		JBrowse link
G Ncor2 nuclear receptor co-repressor 2 disease_progression ISO RGD PMID:19904269 RGD:2314971 NCBI chr12:31,466,418...31,628,319
Ensembl chr12:31,466,412...31,628,319 		JBrowse link
G Nf2 NF2, moesin-ezrin-radixin like (MERLIN) tumor suppressor ISO ClinVar Annotator: match by term: Malignant breast neoplasm ClinVar PMID:25741868 PMID:28492532 NCBI chr14:79,627,399...79,710,709
Ensembl chr14:79,627,399...79,710,667 		JBrowse link
G Nfkb1 nuclear factor kappa B subunit 1 treatment ISO DNA:SNPs, haplotype: :multiple RGD PMID:28797847 RGD:13506729 NCBI chr 2:224,016,214...224,132,135
Ensembl chr 2:224,016,214...224,110,404 		JBrowse link
G Nme1 NME/NM23 nucleoside diphosphate kinase 1 disease_progression ISO RGD PMID:8605098 RGD:2299064 NCBI chr10:78,907,036...78,929,659
Ensembl chr10:78,906,083...78,916,408 		JBrowse link
G Nod2 nucleotide-binding oligomerization domain containing 2 susceptibility ISO DNA:insertion: : 3020_3021insC (human) RGD PMID:16267612 RGD:5131514 NCBI chr19:18,382,369...18,422,817
Ensembl chr19:18,382,439...18,417,177 		JBrowse link
G Nos3 nitric oxide synthase 3 no_association
susceptibility
disease_progression		 ISO DNA:polymorphism:exon:p.E298D (human)
DNA:polymorphism:promoter:-786T>C (human)
DNA:polymorphisms		 RGD PMID:16807677 PMID:17063466 PMID:17891484 RGD:2292075, RGD:2292074, RGD:2292068 NCBI chr 4:10,793,834...10,814,170
Ensembl chr 4:10,793,834...10,814,166 		JBrowse link
G Nqo1 NAD(P)H quinone dehydrogenase 1 ISO
IEP		 ClinVar Annotator: match by term: Breast cancer, post-chemotherapy poor survival in
mRNA, protein:decreased expression, decreased activity:liver (rat)		 ClinVar
RGD		 PMID:1737339 PMID:6933553 PMID:9000600 PMID:9230185 PMID:9328142 More... RGD:10769361, RGD:13440090 NCBI chr19:35,295,633...35,310,528
Ensembl chr19:35,295,573...35,310,557 		JBrowse link
G Nqo2 N-ribosyldihydronicotinamide:quinone dehydrogenase 2 susceptibility ISO OMIM NCBI chr17:30,909,482...30,938,725
Ensembl chr17:30,909,187...30,938,320 		JBrowse link
G Nuf2 NUF2 component of NDC80 kinetochore complex disease_progression ISO RGD PMID:31140425 PMID:31198978 RGD:28867230, RGD:28867231 NCBI chr13:81,693,675...81,722,765
Ensembl chr13:81,693,598...81,722,766 		JBrowse link
G Ogg1 8-oxoguanine DNA glycosylase susceptibility
no_association
disease_progression		 ISO DNA:SNP: :p.S326C (human)
DNA:SNPs:5' utr:c.-23A>G, c.-45G>A, c.-63G>C, (human)
DNA:SNPs:5' utr:c.-18G>T, c.-53G>C (human)
DNA:transition:intron:IVS1+22G>A (human)
protein:increased expression:breast
DNA:polymorphisms: :p.R229Q (human)
DNA:hypermethylation:promoter
DNA:missense mutation: :p.S326C (rs1052133) (human)
DNA:polymorphisms: :p.S326C, 7143A>G (human)
DNA:polymorphism: :11657A>G (human)
DNA:SNPs: :rs2072668, p.S326C (human)		 RGD PMID:24606430 PMID:21153698 PMID:21153698 PMID:11536371 PMID:11536371 More... RGD:8657139, RGD:8657373, RGD:8657373, RGD:8657371, RGD:8657371, RGD:8657370, RGD:8657368, RGD:8657157, RGD:8657149, RGD:8657149, RGD:8657140 NCBI chr 4:146,474,701...146,481,959
Ensembl chr 4:146,474,750...146,484,766 		JBrowse link
G Pah phenylalanine hydroxylase ISO ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:17502162 PMID:21890392 PMID:22526846 PMID:23357515 PMID:23856132 More... NCBI chr 7:21,933,179...21,998,134
Ensembl chr 7:21,933,179...21,998,130 		JBrowse link
G Pak1 p21 (RAC1) activated kinase 1 ISO mRNA:increased expression:breast
DNA:amplification		 RGD PMID:16705121 PMID:28055013 PMID:17486065 RGD:2299167, RGD:156430322, RGD:2299165 NCBI chr 1:152,111,172...152,226,390
Ensembl chr 1:152,111,188...152,226,383 		JBrowse link
G Palb2 partner and localizer of BRCA2 ISO ClinVar Annotator: match by term: Breast cancer, somatic | ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Cancer breast | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, somatic | ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Cancer breast | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, lobular | ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast		 ClinVar PMID:100849 PMID:9536098 PMID:16199547 PMID:16793542 PMID:17200668 More... NCBI chr 1:176,665,076...176,689,053
Ensembl chr 1:176,665,076...176,688,990 		JBrowse link
G Pdgfa platelet derived growth factor subunit A ISO mRNA:increased expression:breast RGD PMID:8619189 RGD:2292155 NCBI chr12:15,645,549...15,667,056
Ensembl chr12:15,645,541...15,666,497 		JBrowse link
G Pdgfrb platelet derived growth factor receptor beta ISO protein:increased expression:breast RGD PMID:17390053 RGD:2292174 NCBI chr18:54,499,962...54,538,840
Ensembl chr18:54,499,964...54,538,843 		JBrowse link
G Pgf placental growth factor disease_progression ISO RGD PMID:22270936 RGD:6483604 NCBI chr 6:104,816,102...104,826,685
Ensembl chr 6:104,816,104...104,826,685 		JBrowse link
G Phb1 prohibitin 1 susceptibility
no_association		 ISO DNA:polymorphism:3' utr:1703C>T
ClinVar Annotator: match by term: Breast cancer, susceptibility to		 OMIM
ClinVar
RGD		 PMID:8809404 PMID:11377649 PMID:11377649 PMID:14652295 RGD:2292405, RGD:2292402 NCBI chr10:80,605,268...80,618,043
Ensembl chr10:80,605,251...80,618,042 		JBrowse link
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha ISO
ISS		 ClinVar Annotator: match by term: Breast cancer, somatic
ClinVar Annotator: match by term: Breast cancer, somatic | ClinVar Annotator: match by term: Malignant tumor of breast
OMIM:114480		 OMIM
ClinVar
MouseDO		 PMID:15016963 PMID:15254419 PMID:15520168 PMID:15608678 PMID:15647370 More... NCBI chr 2:115,175,275...115,249,034
Ensembl chr 2:115,174,984...115,249,032 		JBrowse link
G Plau plasminogen activator, urokinase treatment ISO
IDA		 protein:increased expression:nipple, discharge (human) RGD PMID:22296682 PMID:19500378 RGD:7241082, RGD:7241801 NCBI chr15:3,456,230...3,462,732
Ensembl chr15:3,456,232...3,462,775 		JBrowse link
G Plcg1 phospholipase C, gamma 1 ISO RGD PMID:9703922 RGD:2299874 NCBI chr 3:149,385,587...149,416,330
Ensembl chr 3:149,385,587...149,416,330 		JBrowse link
G Plpp4 phospholipid phosphatase 4 ISO mRNA:increased expression:breast RGD PMID:16818692 RGD:2314524 NCBI chr 1:183,829,794...183,959,319
Ensembl chr 1:183,830,409...183,959,319 		JBrowse link
G Pmepa1 prostate transmembrane protein, androgen induced 1 ISO mRNA:increased expression:breast RGD PMID:14639658 RGD:2315106 NCBI chr 3:162,011,884...162,060,343
Ensembl chr 3:162,012,751...162,060,454 		JBrowse link
G Pms1 PMS1 homolog 1, mismatch repair system component ISO ClinVar Annotator: match by term: PMS1-related breast cancer ClinVar PMID:24728327 PMID:25741868 NCBI chr 9:48,229,403...48,340,237
Ensembl chr 9:48,253,410...48,340,237 		JBrowse link
G Pms2 PMS1 homolog 2, mismatch repair system component ISO ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, somatic | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast		 ClinVar
RGD		 PMID:3199258 PMID:9536098 PMID:10479499 PMID:10480359 PMID:15077197 More... RGD:2293505 NCBI chr12:10,676,818...10,701,161
Ensembl chr12:10,676,764...10,701,066 		JBrowse link
G Pold1 DNA polymerase delta 1, catalytic subunit ISO ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:23376243 PMID:24033266 PMID:24123366 PMID:25637381 PMID:25741868 More... NCBI chr 1:95,025,462...95,041,559
Ensembl chr 1:95,025,499...95,036,465 		JBrowse link
G Pole DNA polymerase epsilon, catalytic subunit ISO ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:21701589 PMID:23263490 PMID:24033266 PMID:25741868 PMID:26251183 More... NCBI chr12:46,345,420...46,393,984
Ensembl chr12:46,345,420...46,393,939 		JBrowse link
G Polh DNA polymerase eta ISO ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:25741868 PMID:28492532 PMID:30414346 PMID:33558524 NCBI chr 9:14,778,355...14,813,210
Ensembl chr 9:14,777,888...14,812,723 		JBrowse link
G Pon1 paraoxonase 1 susceptibility ISO DNA:polymorphism: :p.Q192R (human) RGD PMID:17428620 RGD:8661246 NCBI chr 4:33,294,737...33,325,759
Ensembl chr 4:33,294,722...33,321,360 		JBrowse link
G Ppm1d protein phosphatase, Mg2+/Mn2+ dependent, 1D ISO OMIM NCBI chr10:70,172,603...70,208,607
Ensembl chr10:70,172,603...70,208,607 		JBrowse link
G Ppp2r2b protein phosphatase 2, regulatory subunit B, beta disease_progression ISO DNA:SNP: :rs319217 (human) RGD PMID:20669227 RGD:5686296 NCBI chr18:34,653,716...35,080,889
Ensembl chr18:34,653,721...35,081,025 		JBrowse link
G Pramex1 PRAME like, X-linked 1 ISO mRNA:increased expression:breast (human) RGD PMID:17624586 RGD:11535056 NCBI chr  X:98,567,994...98,574,654
Ensembl chr  X:98,569,415...98,572,096 		JBrowse link
G Prkaa1 protein kinase AMP-activated catalytic subunit alpha 1 ISO DNA:SNP: :rs10074991 (human) RGD PMID:22562547 RGD:6484541 NCBI chr 2:54,240,298...54,275,978
Ensembl chr 2:54,240,137...54,275,978 		JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit ISO ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:28492532 NCBI chr11:85,040,790...85,258,357
Ensembl chr11:85,040,792...85,257,952 		JBrowse link
G Psen2 presenilin 2 susceptibility ISO protein:amino acid substitution:R62H, R71W RGD PMID:16474849 RGD:2302525 NCBI chr13:91,967,506...91,993,240
Ensembl chr13:91,967,983...91,993,174 		JBrowse link
G Pten phosphatase and tensin homolog disease_progression ISO protein:decreased expression:breast
ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
associated with Hamartoma Syndrome, Multiple;DNA:insertions, deletion:c.137ins3, c.791insAT, c.915del12 (human)
associated with Hamartoma Syndrome, Multiple;DNA:mutations: :multiple		 ClinVar
RGD		 PMID:9467011 PMID:9619835 PMID:9788441 PMID:11918710 PMID:14569134 More... RGD:2292514, RGD:12832752, RGD:2292517 NCBI chr 1:230,630,443...230,697,070
Ensembl chr 1:230,630,338...230,696,838 		JBrowse link
G Ptges3 prostaglandin E synthase 3 ISO protein:increased expression:breast tumor cell, cytoplasm (human) RGD PMID:20847343 RGD:5688064 NCBI chr 7:490,698...507,759
Ensembl chr 7:490,656...508,084 		JBrowse link
G Ptgs1 prostaglandin-endoperoxide synthase 1 ISO protein:increased expression:breast RGD PMID:9521170 RGD:2300213 NCBI chr 3:19,584,015...19,605,589
Ensembl chr 3:19,584,015...19,605,586 		JBrowse link
G Ptk2b protein tyrosine kinase 2 beta ISO DNA:deletion RGD PMID:16457699 RGD:2292558 NCBI chr15:40,360,722...40,481,235
Ensembl chr15:40,360,723...40,481,282 		JBrowse link
G Ptpn13 protein tyrosine phosphatase, non-receptor type 13 susceptibility ISO DNA:SNP: :rs989902(human) RGD PMID:24338422 RGD:152599188 NCBI chr14:6,108,202...6,282,619
Ensembl chr14:6,108,211...6,282,563 		JBrowse link
G Rac1 Rac family small GTPase 1 exacerbates ISO protein:increased expression:breast (human) RGD PMID:25557791 PMID:22345078 RGD:153323321, RGD:155230815 NCBI chr12:11,037,028...11,057,251
Ensembl chr12:11,036,698...11,057,251 		JBrowse link
G Rad50 RAD50 double strand break repair protein ISO ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:25741868 PMID:28492532 NCBI chr10:37,809,353...37,861,309
Ensembl chr10:37,808,726...37,861,396 		JBrowse link
G Rad51 RAD51 recombinase susceptibility
resistance		 ISO DNA:SNPs
DNA:polymorphism: :135G>C
DNA:deletion, loss of heterozygosity
mRNA:increased expression:breast
DNA:repeat		 OMIM
RGD		 PMID:16624550 PMID:17301259 PMID:17180310 PMID:17942895 PMID:18429825 More... RGD:2292637, RGD:2298722, RGD:2292636, RGD:2292635, RGD:2292632, RGD:2292634 NCBI chr 3:106,099,753...106,125,038
Ensembl chr 3:106,100,381...106,125,035 		JBrowse link
G Rad51c RAD51 paralog C ISO ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, lobular | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast		 ClinVar PMID:9536098 PMID:17576681 PMID:18203022 PMID:20400963 PMID:20400964 More... NCBI chr10:72,205,032...72,231,643
Ensembl chr10:72,205,032...72,231,248 		JBrowse link
G Rad51d RAD51 paralog D ISO ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, protection against | ClinVar Annotator: match by term: Malignant tumor of breast		 ClinVar PMID:10749867 PMID:14704354 PMID:15170666 PMID:16199547 PMID:16717288 More... NCBI chr10:67,805,720...67,824,452
Ensembl chr10:67,740,712...67,824,434 		JBrowse link
G Rad54l RAD54 like ISO OMIM NCBI chr 5:129,575,431...129,605,100
Ensembl chr 5:129,575,378...129,605,070 		JBrowse link
G Rassf1 Ras association domain family member 1 susceptibility ISO DNA:hypermethylation
DNA, mRNA, protein:hypermethylation, decreased expression:promoter, breast		 RGD PMID:18483325 PMID:18425370 RGD:2299868, RGD:2299869 NCBI chr 8:108,225,023...108,236,164
Ensembl chr 8:108,225,023...108,236,164 		JBrowse link
G Rb1cc1 RB1-inducible coiled-coil 1 ISO OMIM
RGD		 PMID:12068296 RGD:1599411 NCBI chr 5:13,161,648...13,225,560
Ensembl chr 5:13,161,648...13,225,560 		JBrowse link
G Recql4 RecQ like helicase 4 ISO ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:25741868 PMID:28492532 NCBI chr 7:108,423,453...108,430,790
Ensembl chr 7:108,423,455...108,430,619 		JBrowse link
G Rel REL proto-oncogene, NF-kB subunit ISO RGD PMID:10713699 RGD:2300275 NCBI chr14:97,690,105...97,721,194
Ensembl chr14:97,695,161...97,720,892 		JBrowse link
G Relb RELB proto-oncogene, NF-kB subunit ISO protein:increased expression:breast
protein:decreased localization:T cell, nucleus		 RGD PMID:21640702 PMID:9724088 RGD:7777150, RGD:2298697 NCBI chr 1:79,257,738...79,285,490
Ensembl chr 1:79,257,725...79,285,507 		JBrowse link
G Rerg RAS-like, estrogen-regulated, growth-inhibitor severity ISO mRNA:increased expression:breast (human) RGD PMID:11533059 RGD:1304529 NCBI chr 4:169,981,634...170,089,777
Ensembl chr 4:169,982,279...170,089,715 		JBrowse link
G Ret ret proto-oncogene ISO ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:7647787 PMID:7881414 PMID:9727738 PMID:9760196 PMID:10646792 More... NCBI chr 4:151,325,969...151,368,176
Ensembl chr 4:151,326,431...151,368,176 		JBrowse link
G Rhoa ras homolog family member A disease_progression
severity		 ISO protein:increased expression:breast RGD PMID:18575772 PMID:12237774 RGD:2298866, RGD:2298874 NCBI chr 8:108,991,926...109,025,746
Ensembl chr 8:108,991,954...109,025,746 		JBrowse link
G Rhob ras homolog family member B severity ISO protein:increased expression:breast RGD PMID:12237774 RGD:2298874 NCBI chr 6:31,363,752...31,365,926
Ensembl chr 6:31,363,548...31,366,108 		JBrowse link
G Rhoc ras homolog family member C severity ISO protein:increased expression:breast RGD PMID:12237774 RGD:2298874 NCBI chr 2:192,287,065...192,293,292
Ensembl chr 2:192,287,130...192,295,306 		JBrowse link
G Rnasel ribonuclease L no_association ISO RGD PMID:15330212 RGD:2291997 NCBI chr13:65,894,990...65,910,354
Ensembl chr13:65,901,459...65,908,704 		JBrowse link
G Rnf20 ring finger protein 20 ISO DNA:hypermethylation:promoter (human) RGD PMID:18832071 RGD:9831404 NCBI chr 5:63,976,063...64,001,754
Ensembl chr 5:63,976,045...64,001,754 		JBrowse link
G RT1-Ba RT1 class II, locus Ba ISO DNA:polymorphism (human) RGD PMID:21245432 RGD:5147786 NCBI chr20:4,575,134...4,579,727
Ensembl chr20:4,575,134...4,579,744 		JBrowse link
G RT1-Db1 RT1 class II, locus Db1 susceptibility ISO RGD PMID:11349219 PMID:16799707 RGD:2314699, RGD:2306231 NCBI chr20:4,548,664...4,558,237
Ensembl chr20:4,548,666...4,558,258 		JBrowse link
G Runx3 RUNX family transcription factor 3 ISO DNA, protein:hypermethylation, altered localization:promoter RGD PMID:16818622 RGD:2302554 NCBI chr 5:147,360,587...147,419,161
Ensembl chr 5:147,360,994...147,419,156 		JBrowse link
G Sdhb succinate dehydrogenase complex iron sulfur subunit B ISO ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:14985401 PMID:16322339 PMID:16912137 PMID:17102082 PMID:17102083 More... NCBI chr 5:153,264,906...153,285,570
Ensembl chr 5:153,264,899...153,314,293 		JBrowse link
G Sdhc succinate dehydrogenase complex subunit C ISO ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:23175444 PMID:24033266 PMID:24466223 PMID:25741868 PMID:26467025 More... NCBI chr13:83,544,652...83,565,560
Ensembl chr13:83,544,652...83,566,253 		JBrowse link
G Serpine1 serpin family E member 1 ISO protein:increased expression:breast, tumor (human) RGD PMID:15448007 RGD:8547748 NCBI chr12:19,601,272...19,611,657
Ensembl chr12:19,601,272...19,611,657 		JBrowse link
G Setd5 SET domain containing 5 ISO RGD PMID:35063407 RGD:155804257 NCBI chr 4:146,217,172...146,294,896
Ensembl chr 4:146,217,180...146,294,894 		JBrowse link
G Shmt1 serine hydroxymethyltransferase 1 resistance ISO RGD PMID:17896178 RGD:2300321 NCBI chr10:45,468,698...45,490,833
Ensembl chr10:45,468,700...45,497,820 		JBrowse link
G Six1 SIX homeobox 1 severity ISO mRNA:increased expression:breast epithelium (human) RGD PMID:9770533 RGD:11561960 NCBI chr 6:91,746,739...91,751,975
Ensembl chr 6:91,746,739...91,751,975 		JBrowse link
G Skp2 S-phase kinase associated protein 2 ISO protein:increased expression:breast RGD PMID:19350629 RGD:2315035 NCBI chr 2:58,161,226...58,189,293
Ensembl chr 2:58,161,229...58,189,338 		JBrowse link
G Slc12a3 solute carrier family 12 member 3 ISO ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:11168953 PMID:21415153 PMID:25741868 PMID:28492532 PMID:28947054 More... NCBI chr19:10,630,651...10,679,250
Ensembl chr19:10,631,393...10,669,091 		JBrowse link
G Slc22a18 solute carrier family 22, member 18 ISO OMIM NCBI chr 1:198,670,626...198,694,977
Ensembl chr 1:198,671,731...198,694,975 		JBrowse link
G Slx4 SLX4 structure-specific endonuclease subunit ISO ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:22401137 PMID:22911665 PMID:23211700 PMID:23840564 PMID:25741868 More... NCBI chr10:11,526,623...11,549,313
Ensembl chr10:11,528,424...11,549,295 		JBrowse link
G Smad4 SMAD family member 4 ISO ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:25741868 PMID:26467025 PMID:28492532 NCBI chr18:67,243,742...67,274,438
Ensembl chr18:67,243,742...67,274,438 		JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 ISS
ISO		 OMIM:114480
ClinVar Annotator: match by term: Malignant tumor of breast		 MouseDO
ClinVar		 PMID:25741868 PMID:28492532 NCBI chr 8:20,167,717...20,258,975
Ensembl chr 8:20,167,717...20,258,975 		JBrowse link
G Sncg synuclein, gamma disease_progression ISO protein:increased expression:breast RGD PMID:16821081 RGD:6478795 NCBI chr16:9,700,513...9,705,751
Ensembl chr16:9,700,514...9,705,368 		JBrowse link
G Snw1 SNW domain containing 1 susceptibility ISO DNA:snp:intron: T>A (human) (rs1477261) RGD PMID:19377877 RGD:2683526 NCBI chr 6:107,095,450...107,119,536
Ensembl chr 6:107,095,457...107,119,536 		JBrowse link
G Sod2 superoxide dismutase 2 ISO RGD PMID:15883815 RGD:1581240 NCBI chr 1:47,638,318...47,645,163
Ensembl chr 1:47,636,528...47,645,189 		JBrowse link
G Sox2 SRY-box transcription factor 2 treatment
disease_progression		 ISO RGD PMID:22561374 PMID:21822303 PMID:22832207 RGD:8661656, RGD:8661663, RGD:8661657 NCBI chr 2:117,536,929...117,539,340
Ensembl chr 2:117,536,929...117,539,338 		JBrowse link
G Spint1 serine peptidase inhibitor, Kunitz type 1 severity ISO mRNA:decreased expression:breast (human) RGD PMID:14734471 RGD:1581315 NCBI chr 3:106,231,082...106,244,121
Ensembl chr 3:106,231,444...106,244,119 		JBrowse link
G Srsf5 serine and arginine rich splicing factor 5 severity ISO mRNA:increased expression:breast (human) RGD PMID:17651715 RGD:11039450 NCBI chr 6:100,605,165...100,610,192
Ensembl chr 6:100,605,456...100,610,177 		JBrowse link
G Stat1 signal transducer and activator of transcription 1 disease_progression ISO
ISS		 protein:increased expression:breast
OMIM:114480		 MouseDO
RGD		 PMID:17868458 RGD:2291892 NCBI chr 9:49,419,561...49,459,969
Ensembl chr 9:49,419,340...49,588,540 		JBrowse link
G Stat3 signal transducer and activator of transcription 3 susceptibility
treatment
disease_progression		 ISO DNA:snp RGD PMID:17639043 PMID:15374974 PMID:22374428 PMID:21740845 RGD:2291912, RGD:8694291, RGD:8694288, RGD:8694286 NCBI chr10:85,811,206...85,863,057
Ensembl chr10:85,811,218...85,863,057 		JBrowse link
G Stk11 serine/threonine kinase 11 ISO ClinVar Annotator: match by term: Breast cancer, early-onset | ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast		 ClinVar PMID:9536098 PMID:10429655 PMID:12533684 PMID:15800014 PMID:16287113 More... NCBI chr 7:9,574,553...9,591,315
Ensembl chr 7:9,575,269...9,591,315 		JBrowse link
G Sult1a1 sulfotransferase family 1A member 1 ISO DNA:SNP:exon:p.R213H (human) RGD PMID:16175316 RGD:1581438 NCBI chr 1:181,272,022...181,276,750
Ensembl chr 1:181,272,023...181,275,562 		JBrowse link
G Sult1e1 sulfotransferase family 1E member 1 susceptibility ISO DNA:SNP:promoter:-64G>A
DNA:SNP:intron, 3' utr:IVS4-1653T>C, *959G>A		 RGD PMID:17372239 PMID:15894657 RGD:2302563, RGD:1581439 NCBI chr14:20,422,324...20,439,562
Ensembl chr14:20,422,324...20,439,275