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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.

Term:melioidosis
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Accession:DOID:5052 term browser browse the term
Definition:A primary bacterial infectious disease that results_in infection, has_material_basis_in Burkholderia pseudomallei, which is transmitted_by contact with the contaminated water or soil. The infection has_symptom fever, has_symptom respiratory distress, has_symptom chest pain, and has_symptom stomach pain. (DO)
Synonyms:exact_synonym: Nightcliff gardener's disease;   Whitmore's disease;   acute and fulminating melioidosis;   melioidoses;   pseudoglanders;   subacute and chronic melioidosis
 related_synonym: melioidosis, resistance to;   melioidosis, susceptibility to
 primary_id: MESH:D008554
 alt_id: OMIM:615557
 xref: GARD:9546;   ICD10CM:A24.9;   ICD9CM:025;   NCI:C128336
For additional species annotation, visit the Alliance of Genome Resources.



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melioidosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ifna1 interferon, alpha 1 ISO mRNA:increased expression:PBMC RGD PMID:28435890 RGD:36174031 NCBI chr 5:103,097,356...103,097,925
Ensembl chr 5:103,097,356...103,097,925
JBrowse link
G Irak3 interleukin-1 receptor-associated kinase 3 ISO mRNA:increased expression:peripheral blood mononuclear cell (human) RGD PMID:19114913 RGD:36049801 NCBI chr 7:55,653,949...55,714,371
Ensembl chr 7:55,653,962...55,713,121
JBrowse link
G Plaur plasminogen activator, urokinase receptor ISO RGD PMID:20142364 RGD:6484129 NCBI chr 1:80,053,440...80,068,384
Ensembl chr 1:80,050,324...80,068,595
JBrowse link
G Serpinf1 serpin family F member 1 severity ISO protein:increased expression:plasma (human) RGD PMID:23992406 PMID:23992406 PMID:25370187 RGD:36174010, RGD:36174010, RGD:36174011 NCBI chr10:60,250,198...60,262,593
Ensembl chr10:60,249,708...60,262,646
JBrowse link
G Tlr5 toll-like receptor 5 susceptibility ISO mRNA:increased expression:blood, monocyte, granulocyte (human)
ClinVar Annotator: match by term: Melioidosis, resistance to
CTD Direct Evidence: marker/mechanism
ClinVar
CTD
OMIM
RGD
PMID:14623910 PMID:16027372 PMID:23447684 PMID:17676990 RGD:5129511 NCBI chr13:94,634,778...94,658,992
Ensembl chr13:94,634,801...94,657,738
JBrowse link
G Trem1 triggering receptor expressed on myeloid cells 1 severity
treatment
ISO RGD PMID:18008257 PMID:18008257 PMID:18008257 RGD:126928120, RGD:126928120, RGD:126928120 NCBI chr 9:12,763,819...12,779,285
Ensembl chr 9:12,763,819...12,779,203
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  disease 21140
    disease by infectious agent 2211
      Bacterial Infections and Mycoses 1070
        bacterial infectious disease 823
          primary bacterial infectious disease 196
            melioidosis 6
Path 2
Term Annotations click to browse term
  disease 21140
    disease by infectious agent 2211
      Bacterial Infections and Mycoses 1070
        bacterial infectious disease 823
          Gram-Negative Bacterial Infections 200
            Burkholderia Infections 6
              melioidosis 6
paths to the root