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ONTOLOGY REPORT - ANNOTATIONS


Term:biliary tract cancer
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Accession:DOID:4607 term browser browse the term
Definition:A hepatobiliary system cancer that results_in malignant growth located_in the gallbladder or located_in the bile duct. (DO)
Synonyms:exact_synonym: malignant tumour of biliary tract
 primary_id: RDO:9003932
 xref: GARD:5924;   GARD:9304;   ICD10CM:C24.9;   ICD9CM:156.9
For additional species annotation, visit the Alliance of Genome Resources.


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biliary tract cancer term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Apob apolipoprotein B JBrowse link 6 33,176,826 33,216,381 RGD:2325763
G Cyp1a1 cytochrome P450, family 1, subfamily a, polypeptide 1 JBrowse link 8 62,472,087 62,478,122 RGD:2317210
G Ppard peroxisome proliferator-activated receptor delta JBrowse link 20 7,818,289 7,883,482 RGD:2324871
bile duct cancer term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Apob apolipoprotein B JBrowse link 6 33,176,826 33,216,381 RGD:2317550
G Apoe apolipoprotein E JBrowse link 1 80,612,894 80,616,820 RGD:2317550
G Tjp1 tight junction protein 1 JBrowse link 1 126,146,489 126,515,359 RGD:2325030
bile duct carcinoma term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Msln mesothelin JBrowse link 10 15,119,700 15,129,129 RGD:2326059
cholangiocarcinoma term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abcc2 ATP binding cassette subfamily C member 2 JBrowse link 1 263,554,426 263,612,556 RGD:2317508
G Adrb2 adrenoceptor beta 2 JBrowse link 18 57,513,792 57,515,834 RGD:2325640
G Alb albumin JBrowse link 14 19,176,275 19,191,793 RGD:2325682
RGD:2325679
RGD:2325680
G Alox5 arachidonate 5-lipoxygenase JBrowse link 4 148,398,004 148,446,308 RGD:2317521
G Anxa2 annexin A2 JBrowse link 8 75,687,134 75,723,589 RGD:2325728
G Anxa8 annexin A8 JBrowse link 16 10,417,174 10,432,388 RGD:9068941
G Apc APC regulator of WNT signaling pathway JBrowse link 18 27,011,710 27,106,323 RGD:2317198
RGD:2317205
G Apoa1 apolipoprotein A1 JBrowse link 8 50,525,091 50,526,875 RGD:2325756
G Arid1a AT-rich interaction domain 1A JBrowse link 5 151,904,687 151,977,973 RGD:11554173
G Asph aspartate-beta-hydroxylase JBrowse link 5 22,577,680 22,799,333 RGD:6902945
G Bap1 Brca1 associated protein 1 JBrowse link 16 7,336,685 7,345,511 RGD:11554173
G Braf B-Raf proto-oncogene, serine/threonine kinase JBrowse link 4 67,389,331 67,520,549 RGD:11073239
G Cdkn2a cyclin-dependent kinase inhibitor 2A JBrowse link 5 107,823,323 107,832,405 RGD:2317417
G Cycs cytochrome c, somatic JBrowse link 4 80,331,226 80,333,326 RGD:2317615
G Egfr epidermal growth factor receptor JBrowse link 14 99,919,485 100,104,136 RGD:11554173
G Epo erythropoietin JBrowse link 12 22,274,828 22,278,268 RGD:10400912
G Epor erythropoietin receptor JBrowse link 8 22,969,737 22,974,468 RGD:10400912
G Erbb2 erb-b2 receptor tyrosine kinase 2 JBrowse link 10 86,367,596 86,391,728 RGD:11554173
G Faslg Fas ligand JBrowse link 13 79,696,811 79,717,581 RGD:2317746
G Fgf2 fibroblast growth factor 2 JBrowse link 2 124,081,072 124,134,133 RGD:2317765
G Fgfr2 fibroblast growth factor receptor 2 JBrowse link 1 200,590,951 200,696,946 RGD:11554173
G Fscn1 fascin actin-bundling protein 1 JBrowse link 12 13,655,459 13,668,595 RGD:2317780
G Gnas GNAS complex locus JBrowse link 3 172,374,957 172,434,988 RGD:1601377
RGD:11554173
G Gstm1 glutathione S-transferase mu 1 JBrowse link 2 210,803,869 210,809,461 RGD:14700980
G Gstp1 glutathione S-transferase pi 1 JBrowse link 1 219,291,679 219,294,147 RGD:2317198
RGD:14401711
G Hdac6 histone deacetylase 6 JBrowse link X 15,295,372 15,316,673 RGD:9681560
G Hgf hepatocyte growth factor JBrowse link 4 15,435,460 15,505,377 RGD:2317925
RGD:2317909
G Idh1 isocitrate dehydrogenase (NADP(+)) 1 JBrowse link 9 71,882,108 71,911,645 RGD:11554173
G Idh2 isocitrate dehydrogenase (NADP(+)) 2 JBrowse link 1 141,874,354 141,893,674 RGD:11554173
G Il4r interleukin 4 receptor JBrowse link 1 196,942,343 196,967,221 RGD:2317263
G Il6 interleukin 6 JBrowse link 4 3,043,231 3,047,807 RGD:2317167
RGD:14975292
RGD:11554173
G Kmt2c lysine methyltransferase 2C JBrowse link 4
4
82,506
6,083,650
109,986
6,294,413
RGD:11554173
G Kras KRAS proto-oncogene, GTPase JBrowse link 4 179,482,562 179,515,483 RGD:11554173
G Krt7 keratin 7 JBrowse link 7 143,059,731 143,075,907 RGD:2317308
G Mdm2 MDM2 proto-oncogene JBrowse link 7 60,719,060 60,743,618 RGD:2317417
G Met MET proto-oncogene, receptor tyrosine kinase JBrowse link 4 44,747,467 44,854,628 RGD:2317601
RGD:2317578
G Mgmt O-6-methylguanine-DNA methyltransferase JBrowse link 1 209,237,255 209,464,189 RGD:2317632
G Mir155 microRNA 155 JBrowse link 11 24,176,603 24,176,667 RGD:21081530
G Mki67 marker of proliferation Ki-67 JBrowse link 1 207,993,895 208,020,454 RGD:2317705
G Mmp2 matrix metallopeptidase 2 JBrowse link 19 15,542,771 15,570,589 RGD:2324667
RGD:2325769
G Mmp9 matrix metallopeptidase 9 JBrowse link 3 161,413,410 161,421,473 RGD:2325856
RGD:2324667
G Msln mesothelin JBrowse link 10 15,119,700 15,129,129 RGD:11554173
G Mthfr methylenetetrahydrofolate reductase JBrowse link 5 164,844,642 164,864,360 RGD:2317119
G Muc1 mucin 1, cell surface associated JBrowse link 2 188,543,137 188,547,874 RGD:2324622
RGD:2324664
RGD:2324667
RGD:2324638
RGD:2317986
G Muc16 mucin 16, cell surface associated JBrowse link 8 18,438,838 18,639,777 RGD:2325142
G Muc2 mucin 2, oligomeric mucus/gel-forming JBrowse link 1 214,663,929 214,693,197 RGD:2324948
G Muc3 mucin 3, intestinal JBrowse link 12 22,535,663 22,584,775 RGD:2324948
G Muc4 mucin 4, cell surface associated JBrowse link 11 71,242,973 71,285,217 RGD:2324944
RGD:2303602
G Muc5ac mucin 5AC, oligomeric mucus/gel-forming JBrowse link 1 214,725,482 214,756,653 RGD:2324990
RGD:2324948
G Muc5b mucin 5B, oligomeric mucus/gel-forming JBrowse link 1 214,778,459 214,811,237 RGD:2324948
G Muc6 mucin 6, oligomeric mucus/gel-forming JBrowse link 1 214,608,453 214,630,524 RGD:2325167
G Nat2 N-acetyltransferase 2 JBrowse link 16 23,960,709 23,991,570 RGD:2317172
G Ncam1 neural cell adhesion molecule 1 JBrowse link 8 53,836,797 54,134,881 RGD:2326079
G Nos2 nitric oxide synthase 2 JBrowse link 10 66,188,290 66,221,621 RGD:2325280
RGD:11554173
G Notch1 notch receptor 1 JBrowse link 3 3,905,562 3,951,015 RGD:2325330
G Nr1h4 nuclear receptor subfamily 1, group H, member 4 JBrowse link 7 30,003,429 30,162,095 RGD:15090822
G Ogg1 8-oxoguanine DNA glycosylase JBrowse link 4 145,282,828 145,289,367 RGD:2317134
RGD:2317136
G Pawr pro-apoptotic WT1 regulator JBrowse link 7 51,273,764 51,353,700 RGD:9835357
G Pbrm1 polybromo 1 JBrowse link 16 7,103,714 7,202,899 RGD:11554173
G Peg3 paternally expressed 3 JBrowse link 1 70,210,810 70,237,450 RGD:11554173
G Prkaca protein kinase cAMP-activated catalytic subunit alpha JBrowse link 19 25,095,089 25,118,869 RGD:11554173
G Prkacb protein kinase cAMP-activated catalytic subunit beta JBrowse link 2 252,602,197 252,691,886 RGD:11554173
G Prss2 protease, serine, 2 JBrowse link 4 70,689,737 70,694,816 RGD:2324908
G Pten phosphatase and tensin homolog JBrowse link 1 251,421,814 251,487,634 RGD:11554173
RGD:12802341
G Ptgs2 prostaglandin-endoperoxide synthase 2 JBrowse link 13 67,351,230 67,356,920 RGD:2317180
RGD:11554173
G Reg1a regenerating family member 1 alpha JBrowse link 4 109,497,962 109,500,626 RGD:10044031
G Rnf43 ring finger protein 43 JBrowse link 10 74,956,411 75,028,951 RGD:11554173
G Robo2 roundabout guidance receptor 2 JBrowse link 11 11,062,866 12,618,793 RGD:11554173
G Runx3 RUNX family transcription factor 3 JBrowse link 5 153,507,093 153,531,137 RGD:2324955
G Slc5a5 solute carrier family 5 member 5 JBrowse link 16 20,297,414 20,307,401 RGD:11554173
G Smad4 SMAD family member 4 JBrowse link 18 69,626,682 69,657,373 RGD:11554173
G Sox17 SRY-box transcription factor 17 JBrowse link 5 14,890,318 14,895,907 RGD:4889598
G Tgfb1 transforming growth factor, beta 1 JBrowse link 1 82,480,875 82,497,196 RGD:2325020
RGD:1299231
G Tgfbr2 transforming growth factor, beta receptor 2 JBrowse link 8 124,310,288 124,399,345 RGD:1299231
G Thbs1 thrombospondin 1 JBrowse link 3 109,862,120 109,873,466 RGD:2325027
RGD:2325026
RGD:2325024
G Tnc tenascin C JBrowse link 5 79,789,686 79,874,555 RGD:4889598
G Tp53 tumor protein p53 JBrowse link 10 56,186,299 56,198,449 RGD:11554173
G Ugt1a9 UDP glucuronosyltransferase family 1 member A9 JBrowse link 9 95,161,157 95,302,822 RGD:2325161
gallbladder adenocarcinoma term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ace angiotensin I converting enzyme JBrowse link 10 94,170,766 94,213,831 RGD:2325207
G Cdk1 cyclin-dependent kinase 1 JBrowse link 20 20,576,341 20,591,510 RGD:2722465
gallbladder cancer term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Apob apolipoprotein B JBrowse link 6 33,176,826 33,216,381 RGD:2325761
RGD:2325764
G Apoe apolipoprotein E JBrowse link 1 80,612,894 80,616,820 RGD:2317550
G Bub1b BUB1 mitotic checkpoint serine/threonine kinase B JBrowse link 3 110,367,949 110,420,471 RGD:2324871
G Ccr5 C-C motif chemokine receptor 5 JBrowse link 8 133,192,398 133,215,599 RGD:2317570
G Cyp17a1 cytochrome P450, family 17, subfamily a, polypeptide 1 JBrowse link 1 266,422,127 266,429,947 RGD:2317619
G Cyp1a1 cytochrome P450, family 1, subfamily a, polypeptide 1 JBrowse link 8 62,472,087 62,478,122 RGD:2317212
RGD:2317211
G Dpyd dihydropyrimidine dehydrogenase JBrowse link 2 221,823,692 222,694,627 RGD:2317631
G Egf epidermal growth factor JBrowse link 2 68,820,616 68,895,537 RGD:2317646
RGD:2317641
G Gstm1 glutathione S-transferase mu 1 JBrowse link 2 210,803,869 210,809,461 RGD:14700928
G Keap1 Kelch-like ECH-associated protein 1 JBrowse link 8 22,250,518 22,259,868 RGD:6893398
G Xrcc1 X-ray repair cross complementing 1 JBrowse link 1 81,412,635 81,441,680 RGD:2317128
gallbladder carcinoma term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abo ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase JBrowse link 3 4,374,679 4,394,374 RGD:2317512
G Actr3 actin related protein 3 JBrowse link 13 41,695,520 41,738,622 RGD:11571623
G Antxr1 ANTXR cell adhesion molecule 1 JBrowse link 4 118,946,267 119,131,202 RGD:9684943
G Cfl1 cofilin 1 JBrowse link 1 220,869,805 220,873,337 RGD:11571623
G Erbb2 erb-b2 receptor tyrosine kinase 2 JBrowse link 10 86,367,596 86,391,728 RGD:8554872
G Erbb3 erb-b2 receptor tyrosine kinase 3 JBrowse link 7 2,989,202 3,010,610 RGD:8554872
G Il10 interleukin 10 JBrowse link 13 47,738,933 47,743,392 RGD:2317654
G Mir155 microRNA 155 JBrowse link 11 24,176,603 24,176,667 RGD:21079444
G Mtus1 microtubule associated scaffold protein 1 JBrowse link 16 54,240,892 54,386,131 RGD:25330344
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha JBrowse link 2 118,831,350 118,861,456 RGD:8554872
G Tgfa transforming growth factor alpha JBrowse link 4 117,961,877 118,045,923 RGD:2317470
G Tjp1 tight junction protein 1 JBrowse link 1 126,146,489 126,515,359 RGD:2325030
G Tp53 tumor protein p53 JBrowse link 10 56,186,299 56,198,449 RGD:8554872
G Tymp thymidine phosphorylase JBrowse link 7 130,342,481 130,347,845 RGD:2325157
intrahepatic cholangiocarcinoma term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Apc APC regulator of WNT signaling pathway JBrowse link 18 27,011,710 27,106,323 RGD:8554872
G Arid1a AT-rich interaction domain 1A JBrowse link 5 151,904,687 151,977,973 RGD:14974231
G Becn1 beclin 1 JBrowse link 10 89,209,944 89,225,297 RGD:14974231
G Braf B-Raf proto-oncogene, serine/threonine kinase JBrowse link 4 67,389,331 67,520,549 RGD:14398746
G Fas Fas cell surface death receptor JBrowse link 1 252,589,785 252,624,790 RGD:14700701
G Faslg Fas ligand JBrowse link 13 79,696,811 79,717,581 RGD:14700701
G Idh1 isocitrate dehydrogenase (NADP(+)) 1 JBrowse link 9 71,882,108 71,911,645 RGD:14974229
G Idh2 isocitrate dehydrogenase (NADP(+)) 2 JBrowse link 1 141,874,354 141,893,674 RGD:14985256
G Kras KRAS proto-oncogene, GTPase JBrowse link 4 179,482,562 179,515,483 RGD:13592920
RGD:14398746
G Mir152 microRNA 152 JBrowse link 10 84,719,319 84,719,403 RGD:19165148
G Mir200b microRNA 200b JBrowse link 5 173,490,144 173,490,238 RGD:14928335
G Mir21 microRNA 21 JBrowse link 10 73,902,210 73,902,301 RGD:14928335
G Mir221 microRNA 221 JBrowse link X 3,684,480 3,684,588 RGD:14928335
G Smad4 SMAD family member 4 JBrowse link 18 69,626,682 69,657,373 RGD:18936999
RGD:21066336
Klatskin's tumor term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Apc APC regulator of WNT signaling pathway JBrowse link 18 27,011,710 27,106,323 RGD:8554872

Term paths to the root
Path 1
Term Annotations click to browse term
  disease 16017
    disease of cellular proliferation 5887
      Neoplasms by Site 5260
        organ system cancer 4044
          gastrointestinal system cancer 1258
            hepatobiliary system cancer 784
              biliary tract cancer 108
                bile duct cancer + 87
                gallbladder cancer + 27
Path 2
Term Annotations click to browse term
  disease 16017
    disease of anatomical entity 15273
      gastrointestinal system disease 4612
        Digestive System Neoplasms 1898
          Gastrointestinal Neoplasms 1758
            gastrointestinal system cancer 1258
              hepatobiliary system cancer 784
                biliary tract cancer 108
                  bile duct cancer + 87
                  gallbladder cancer + 27
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.