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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.

Term:large cell carcinoma
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Accession:DOID:4552 term browser browse the term
Definition:A tumor of undifferentiated (anaplastic) cells of large size. It is usually bronchogenic. (From Dorland, 27th ed)
Synonyms:exact_synonym: Large Cell Carcinomas
 primary_id: MESH:D018287;   RDO:0007163
 xref: NCI:C3780
For additional species annotation, visit the Alliance of Genome Resources.



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large cell carcinoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CYP2A7 cytochrome P450, family 2, subfamily A, polypeptide 7 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17549345 NCBI chr 1:112,900,508...112,906,745
Ensembl chr 1:112,900,403...112,907,076
JBrowse link
G MET MET proto-oncogene, receptor tyrosine kinase severity ISO RGD PMID:20019837 RGD:2317441 NCBI chr14:55,599,047...55,711,626
Ensembl chr14:55,598,337...55,724,027
JBrowse link
G PRKCA protein kinase C alpha ISO RGD PMID:9474241 RGD:2292463 NCBI chr 9:13,638,106...13,879,571
Ensembl chr 9:13,644,010...13,967,630
JBrowse link
G PYCARD PYD and CARD domain containing ISO CTD Direct Evidence: marker/mechanism CTD PMID:16778195 NCBI chr 6:17,049,352...17,051,348
Ensembl chr 6:17,049,705...17,051,240
JBrowse link
G STRAP serine/threonine kinase receptor associated protein ISO RGD PMID:16778189 RGD:1581429 NCBI chr27:30,800,853...30,817,578
Ensembl chr27:30,675,247...30,817,388
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  disease 13842
    disease of cellular proliferation 6647
      cancer 4798
        cell type cancer 3282
          carcinoma 2811
            large cell carcinoma 5
              Giant Cell Carcinoma + 0
              breast large cell neuroendocrine carcinoma 0
              cervical large cell neuroendocrine carcinoma 0
              large cell carcinoma with rhabdoid phenotype 0
              large cell neuroendocrine carcinoma + 0
              lung large cell carcinoma + 0
              ovarian large-cell neuroendocrine carcinoma 0
              thymus large cell carcinoma 0
paths to the root