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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.

Term:papillary renal cell carcinoma
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Accession:DOID:4465 term browser browse the term
Definition:A renal cell carcinoma that is characterized by the development of multiple, bilateral papillary renal tumors. (DO)
Synonyms:exact_synonym: RCCP1;   chromophil carcinoma of kidney;   papillary kidney carcinoma;   renal cell carcinoma, papillary 1;   sporadic papillary renal cell carcinoma
 primary_id: OMIM:605074
 alt_id: RDO:9001909
 xref: GARD:9572;   NCI:C27890;   NCI:C6975
For additional species annotation, visit the Alliance of Genome Resources.


show annotations for term's descendants           Sort by:
 
papillary renal cell carcinoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APC APC regulator of WNT signaling pathway IAGP ClinVar Annotator: match by term: Papillary renal cell carcinoma ClinVar PMID:25741868, PMID:28492532 NCBI chr 5:112,707,498...112,846,239
Ensembl chr 5:112,707,498...112,846,239
JBrowse link
G ARAF A-Raf proto-oncogene, serine/threonine kinase IAGP ClinVar Annotator: match by term: Papillary renal cell carcinoma, sporadic ClinVar PMID:24569458, PMID:26619011 NCBI chr  X:47,561,205...47,571,908
Ensembl chr  X:47,561,100...47,571,920
JBrowse link
G ASZ1 ankyrin repeat, SAM and basic leucine zipper domain containing 1 IAGP ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1 ClinVar PMID:28492532 NCBI chr 7:117,363,222...117,427,493
Ensembl chr 7:117,363,222...117,428,123
JBrowse link
G ATM ATM serine/threonine kinase IAGP ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1 ClinVar PMID:10571946 NCBI chr11:108,222,484...108,369,102
Ensembl chr11:108,222,832...108,369,102
Ensembl chr11:108,222,832...108,369,102
JBrowse link
G BRAF B-Raf proto-oncogene, serine/threonine kinase IAGP ClinVar Annotator: match by term: Papillary renal cell carcinoma, sporadic
ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1
ClinVar PMID:12068308, PMID:12198537, PMID:12447372, PMID:12460918, PMID:12460919, PMID:12619120, PMID:12644542, PMID:12670889, PMID:12794760, PMID:12960123, PMID:14513361, PMID:14602780, PMID:14679157, PMID:15001635, PMID:15035987, PMID:15126572, PMID:15181070, PMID:15342696, PMID:15356022, PMID:15386408, PMID:15687339, PMID:15998781, PMID:16015629, PMID:16174717, PMID:16187918, PMID:16772349, PMID:17374713, PMID:17488796, PMID:17785355, PMID:18398503, PMID:19001320, PMID:19010912, PMID:19018267, PMID:19238210, PMID:19404918, PMID:19537845, PMID:19561230, PMID:20008640, PMID:20350999, PMID:20413299, PMID:20619739, PMID:20630094, PMID:20818844, PMID:20823850, PMID:20857202, PMID:21107320, PMID:21107323, PMID:21129611, PMID:21156289, PMID:21163703, PMID:21426297, PMID:21483012, PMID:21502544, PMID:21639808, PMID:21641636, PMID:21683865, PMID:21975775, PMID:22038996, PMID:22048237, PMID:22113612, PMID:22180495, PMID:22281684, PMID:22351686, PMID:22356324, PMID:22389471, PMID:22448344, PMID:22536370, PMID:22586120, PMID:22608338, PMID:22649091, PMID:22663011, PMID:22735384, PMID:22743296, PMID:22773810, PMID:22805292, PMID:22972589, PMID:22997239, PMID:23020132, PMID:23031422, PMID:23251002, PMID:23302800, PMID:23325582, PMID:23470635, PMID:23524406, PMID:23549875, PMID:23614898, PMID:23685455, PMID:23812671, PMID:23833300, PMID:23845441, PMID:23918947, PMID:24033266, PMID:24107445, PMID:24112392, PMID:24163374, PMID:24388723, PMID:24446311, PMID:24508103, PMID:24512911, PMID:24576830, PMID:24583796, PMID:24586605, PMID:24594804, PMID:24670642, PMID:24717435, PMID:25024077, PMID:25037139, PMID:25079330, PMID:25157968, PMID:25265492, PMID:25265494, PMID:25370471, PMID:25399551, PMID:25950823, PMID:25989278, PMID:26619011, PMID:26678033, PMID:27404270, PMID:27480103, PMID:28854169, PMID:28891408, PMID:29925953, PMID:31779674, PMID:31891627 NCBI chr 7:140,713,328...140,924,929
Ensembl chr 7:140,719,327...140,924,929
Ensembl chr 7:140,719,327...140,924,929
JBrowse link
G CAPZA2 capping actin protein of muscle Z-line subunit alpha 2 IAGP ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1 ClinVar PMID:28492532 NCBI chr 7:116,862,587...116,922,049
Ensembl chr 7:116,811,070...116,922,049
JBrowse link
G CDKN2A cyclin dependent kinase inhibitor 2A IAGP ClinVar Annotator: match by term: Papillary renal cell carcinoma, sporadic ClinVar PMID:25741868, PMID:26619011 NCBI chr 9:21,967,752...21,995,324
Ensembl chr 9:21,967,753...21,995,301
JBrowse link
G CFTR CF transmembrane conductance regulator IAGP ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1 ClinVar PMID:28492532 NCBI chr 7:117,480,025...117,668,665
Ensembl chr 7:117,287,120...117,715,971
Ensembl chr 7:117,287,120...117,715,971
JBrowse link
G COMETT cytosolic oncogenic antisense to MET transcript IAGP ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1 ClinVar NCBI chr 7:116,563,594...116,688,027
Ensembl chr 7:116,563,594...116,663,829
JBrowse link
G CTNNB1 catenin beta 1 IAGP ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1 ClinVar PMID:26822237 NCBI chr 3:41,199,422...41,240,445
Ensembl chr 3:41,194,741...41,260,096
JBrowse link
G ELOC elongin C IAGP ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1 ClinVar PMID:26619011 NCBI chr 8:73,945,119...73,972,287
Ensembl chr 8:73,939,169...73,972,287
JBrowse link
G ERBB2 erb-b2 receptor tyrosine kinase 2 IAGP ClinVar Annotator: match by term: Papillary renal cell carcinoma, sporadic ClinVar PMID:18413839, PMID:22046346, PMID:23220880, PMID:25157968, PMID:26619011 NCBI chr17:39,688,094...39,728,660
Ensembl chr17:39,687,914...39,730,426
JBrowse link
G FBXW7 F-box and WD repeat domain containing 7 IAGP ClinVar Annotator: match by term: Papillary renal cell carcinoma, sporadic ClinVar PMID:26619011 NCBI chr 4:152,320,544...152,536,873
Ensembl chr 4:152,320,544...152,536,092
JBrowse link
G FGFR3 fibroblast growth factor receptor 3 IAGP ClinVar Annotator: match by term: Papillary renal cell carcinoma, sporadic ClinVar PMID:8589699, PMID:8845844, PMID:9438390, PMID:9843049, PMID:10471491, PMID:11038465, PMID:11429702, PMID:11879084, PMID:15772091, PMID:17384684, PMID:19088846, PMID:19331127, PMID:19381019, PMID:19749790, PMID:20542753, PMID:21273588, PMID:22869148, PMID:23200862, PMID:24476948, PMID:25157968, PMID:25606676, PMID:25741868, PMID:26619011, PMID:28249712, PMID:28492532, PMID:30311386 NCBI chr 4:1,793,293...1,808,872
Ensembl chr 4:1,793,293...1,808,872
JBrowse link
G HRAS HRas proto-oncogene, GTPase IAGP ClinVar Annotator: match by term: Papillary renal cell carcinoma, sporadic
ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1
ClinVar PMID:11150980, PMID:12210337, PMID:14608654, PMID:16155195, PMID:16170316, PMID:16329078, PMID:16372351, PMID:16443854, PMID:16835863, PMID:16881968, PMID:16969868, PMID:17054105, PMID:17250658, PMID:17412879, PMID:17979197, PMID:18039947, PMID:18247425, PMID:18470943, PMID:18978862, PMID:19206176, PMID:19371735, PMID:19382114, PMID:19669404, PMID:20660566, PMID:20979192, PMID:21834037, PMID:21850009, PMID:22087699, PMID:22317973, PMID:22499344, PMID:22683711, PMID:22926243, PMID:23751039, PMID:24033266, PMID:24129065, PMID:24169525, PMID:24224811, PMID:25157968, PMID:25741868, PMID:25914166, PMID:26619011, PMID:27195699, PMID:27589201, PMID:28027064, PMID:28139825, PMID:28390077, PMID:28492532, PMID:29073591, PMID:29493581, PMID:31775759 NCBI chr11:532,242...535,576
Ensembl chr11:532,242...537,287
JBrowse link
G LOC107303340 3p25 von Hippel-Lindau tumor suppressor, E3 ubiquitin protein ligase Alu-mediated recombination region IAGP ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1 ClinVar PMID:7660122, PMID:7728151, PMID:7784063, PMID:7987306, PMID:7987327, PMID:8270255, PMID:8522307, PMID:8592333, PMID:8707293, PMID:8730290, PMID:8956040, PMID:9156047, PMID:9452032, PMID:9829911, PMID:9829912, PMID:10567493, PMID:10900011, PMID:11309459, PMID:11921283, PMID:12000816, PMID:12114495, PMID:14722919, PMID:14973063, PMID:14987375, PMID:15300849, PMID:15574766, PMID:17102069, PMID:17350623, PMID:18446368, PMID:18836774, PMID:19030229, PMID:19252526, PMID:19270817, PMID:19464396, PMID:19602254, PMID:20660572, PMID:21362373, PMID:21715564, PMID:22799452, PMID:23512077, PMID:24206762, PMID:24301059, PMID:25119015, PMID:25157968, PMID:25371412, PMID:25563310, PMID:25720320, PMID:25741868, PMID:25867206, PMID:26822237, PMID:27527340, PMID:27539324, PMID:27617348, PMID:28492532, PMID:28944243, PMID:29616089, PMID:30042107 NCBI chr 3:10,142,339...10,160,352 JBrowse link
G LOC111365177 HNF1 motif-containing MPRA enhancer 7 IAGP ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1 ClinVar PMID:28492532 NCBI chr 7:116,772,624...116,772,768 JBrowse link
G LOC111674463 CFTR promoter region IAGP ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1 ClinVar PMID:28492532 NCBI chr 7:117,476,071...117,480,094 JBrowse link
G LOC111674464 CFTR intron 1 enhancer IAGP ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1 ClinVar PMID:28492532 NCBI chr 7:117,489,455...117,492,403 JBrowse link
G LOC111674465 DNase I hypersensitive site -80 kb upstream of CFTR IAGP ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1 ClinVar PMID:28492532 NCBI chr 7:117,399,495...117,400,694 JBrowse link
G LOC111674466 DNase I hypersensitive site -20.9 kb upstream of CFTR IAGP ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1 ClinVar PMID:28492532 NCBI chr 7:117,458,800...117,459,399 JBrowse link
G LOC111674476 CFTR -35 kb upstream enhancer IAGP ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1 ClinVar PMID:28492532 NCBI chr 7:117,444,395...117,445,995 JBrowse link
G LOC111674478 CFTR -44 kb upstream enhancer IAGP ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1 ClinVar PMID:28492532 NCBI chr 7:117,434,807...117,436,695 JBrowse link
G LOC113219431 greater CFTR locus negative regulatory element CR5 IAGP ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1 ClinVar PMID:28492532 NCBI chr 7:116,704,761...116,705,488 JBrowse link
G LOC113219432 greater CFTR locus negative regulatory element CR8 IAGP ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1 ClinVar PMID:28492532 NCBI chr 7:116,764,110...116,764,598 JBrowse link
G LOC113219433 greater CFTR locus negative regulatory element CR10 IAGP ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1 ClinVar PMID:28492532 NCBI chr 7:117,159,028...117,159,408 JBrowse link
G LOC113219434 greater CFTR locus negative regulatory element NR4 IAGP ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1 ClinVar PMID:28492532 NCBI chr 7:117,088,745...117,089,385 JBrowse link
G LOC113219439 greater CFTR locus negative regulatory element CR6 IAGP ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1 ClinVar PMID:28492532 NCBI chr 7:116,734,066...116,734,517 JBrowse link
G LOC113219440 greater CFTR locus negative regulatory element CR11 IAGP ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1 ClinVar PMID:28492532 NCBI chr 7:117,190,018...117,190,413 JBrowse link
G LOC113219442 greater CFTR locus negative regulatory elements CR12 and CR13 IAGP ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1 ClinVar PMID:28492532 NCBI chr 7:117,286,203...117,286,743 JBrowse link
G LOC113219443 greater CFTR locus negative regulatory element CR15 IAGP ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1 ClinVar PMID:28492532 NCBI chr 7:117,315,946...117,316,585 JBrowse link
G LOC113219444 greater CFTR locus negative regulatory element CR9 IAGP ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1 ClinVar PMID:28492532 NCBI chr 7:116,918,230...116,918,944 JBrowse link
G LOC113219445 greater CFTR locus negative regulatory element CR17 IAGP ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1 ClinVar PMID:28492532 NCBI chr 7:117,324,329...117,324,786 JBrowse link
G LOC113219446 greater CFTR locus negative regulatory element CR18 IAGP ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1 ClinVar PMID:28492532 NCBI chr 7:117,364,729...117,364,917 JBrowse link
G LOC113219447 greater CFTR locus negative regulatory element NR9 IAGP ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1 ClinVar PMID:28492532 NCBI chr 7:117,473,966...117,474,605 JBrowse link
G LOC116186911 CRISPRi-validated cis-regulatory element chr7.4218 IAGP ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1 ClinVar PMID:28492532 NCBI chr 7:116,950,058...116,950,383 JBrowse link
G LRRC56 leucine rich repeat containing 56 IAGP ClinVar Annotator: match by term: Papillary renal cell carcinoma, sporadic
ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1
ClinVar PMID:11150980, PMID:12210337, PMID:14608654, PMID:16155195, PMID:16170316, PMID:16329078, PMID:16372351, PMID:16443854, PMID:16835863, PMID:16881968, PMID:16969868, PMID:17054105, PMID:17250658, PMID:17412879, PMID:17979197, PMID:18039947, PMID:18247425, PMID:18470943, PMID:18978862, PMID:19206176, PMID:19371735, PMID:19382114, PMID:19669404, PMID:20660566, PMID:20979192, PMID:21834037, PMID:21850009, PMID:22087699, PMID:22317973, PMID:22499344, PMID:22683711, PMID:22926243, PMID:23751039, PMID:24033266, PMID:24129065, PMID:24169525, PMID:24224811, PMID:25157968, PMID:25741868, PMID:25914166, PMID:26619011, PMID:27195699, PMID:27589201, PMID:28027064, PMID:28139825, PMID:28390077, PMID:28492532, PMID:29073591, PMID:29493581, PMID:31775759 NCBI chr11:518,967...554,916
Ensembl chr11:537,527...554,912
JBrowse link
G MET MET proto-oncogene, receptor tyrosine kinase IAGP ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1
ClinVar Annotator: match by term: Papillary renal cell carcinoma, sporadic
ClinVar
OMIM
PMID:1104268, PMID:9140397, PMID:9326629, PMID:9563489, PMID:9731534, PMID:9826708, PMID:10327054, PMID:10417759, PMID:10433944, PMID:11042681, PMID:11354004, PMID:11750879, PMID:11927612, PMID:12920089, PMID:14559814, PMID:15371818, PMID:15592501, PMID:15735036, PMID:16189274, PMID:17088437, PMID:17483355, PMID:18564920, PMID:19318576, PMID:19723643, PMID:20126411, PMID:20139696, PMID:20670955, PMID:20949619, PMID:21904579, PMID:21970370, PMID:22703879, PMID:22717761, PMID:23213094, PMID:23806086, PMID:24033266, PMID:24061647, PMID:24088041, PMID:24121490, PMID:24658158, PMID:24728327, PMID:25157968, PMID:25605252, PMID:25636233, PMID:25637381, PMID:25736269, PMID:25741868, PMID:25859546, PMID:26173098, PMID:26467025, PMID:26700204, PMID:26718692, PMID:26887047, PMID:27153395, PMID:27666373, PMID:27696107, PMID:28294470, PMID:28476232, PMID:28492532, PMID:28603720, PMID:28619094 NCBI chr 7:116,672,196...116,798,386
Ensembl chr 7:116,672,196...116,798,386
JBrowse link
G MIR6132 microRNA 6132 IAGP ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1 ClinVar PMID:28492532 NCBI chr 7:117,020,211...117,020,319
Ensembl chr 7:117,020,211...117,020,319
JBrowse link
G MSH2 mutS homolog 2 IAGP ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1 ClinVar PMID:18325052, PMID:21926548, PMID:24506336, PMID:24763289, PMID:25637381, PMID:25741868, PMID:26467025, PMID:26878173, PMID:26951660, PMID:28195393, PMID:28202063, PMID:28492532, PMID:28640387, PMID:29887214 NCBI chr 2:47,403,067...47,634,501
Ensembl chr 2:47,403,067...47,663,146
Ensembl chr 2:47,403,067...47,663,146
JBrowse link
G MTOR mechanistic target of rapamycin kinase IAGP ClinVar Annotator: match by term: Papillary renal cell carcinoma, sporadic
ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1
ClinVar PMID:24631838, PMID:25741868, PMID:26018084, PMID:26619011, PMID:27159400, PMID:27830187 NCBI chr 1:11,106,535...11,273,497
Ensembl chr 1:11,106,535...11,262,551
JBrowse link
G NFE2L2 nuclear factor, erythroid 2 like 2 IAGP ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1 ClinVar PMID:26619011 NCBI chr 2:177,230,303...177,265,131
Ensembl chr 2:177,227,595...177,392,697
JBrowse link
G NRAS NRAS proto-oncogene, GTPase IAGP ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1 ClinVar PMID:1654209, PMID:2278970, PMID:2674680, PMID:3122217, PMID:6587382, PMID:8120410, PMID:10821536, PMID:12460918, PMID:12727991, PMID:14508525, PMID:15899789, PMID:16273091, PMID:16291983, PMID:16434492, PMID:17699718, PMID:18390968, PMID:18633438, PMID:18668139, PMID:18948947, PMID:19075190, PMID:19657110, PMID:19880792, PMID:20130576, PMID:20149136, PMID:20179705, PMID:20406486, PMID:20619739, PMID:20736745, PMID:21107323, PMID:21305640, PMID:21576590, PMID:21729679, PMID:21829508, PMID:22407852, PMID:22499344, PMID:22718121, PMID:22761467, PMID:22773810, PMID:23076151, PMID:23392294, PMID:23400451, PMID:23414587, PMID:23515407, PMID:23538902, PMID:23569304, PMID:23614898, PMID:24006476, PMID:24033266, PMID:24148783, PMID:24370118, PMID:24671188, PMID:25157968, PMID:25348872, PMID:25695684, PMID:26619011, PMID:26821351, PMID:27050078, PMID:28492532, PMID:28780248 NCBI chr 1:114,704,469...114,716,771
Ensembl chr 1:114,704,469...114,716,771
JBrowse link
G PIK3CA phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha IAGP ClinVar Annotator: match by term: Papillary renal cell carcinoma, sporadic
ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1
ClinVar PMID:15016963, PMID:15254419, PMID:15520168, PMID:15608678, PMID:15647370, PMID:15805248, PMID:16847462, PMID:16906227, PMID:16930767, PMID:17376864, PMID:17673550, PMID:18676830, PMID:18725974, PMID:19029981, PMID:19223544, PMID:19366826, PMID:19513541, PMID:19903786, PMID:20453058, PMID:20619739, PMID:21430269, PMID:21558396, PMID:21824802, PMID:22162582, PMID:22162589, PMID:22228622, PMID:22271473, PMID:22357840, PMID:22658544, PMID:22729222, PMID:22729223, PMID:22729224, PMID:23066039, PMID:23100325, PMID:23246288, PMID:23408298, PMID:23754335, PMID:23888070, PMID:24033266, PMID:24265155, PMID:24497998, PMID:24559322, PMID:24782230, PMID:25157968, PMID:25557259, PMID:25741868, PMID:26266975, PMID:26266985, PMID:26301495, PMID:26593112, PMID:26619011, PMID:26822237, PMID:26851524, PMID:27426476, PMID:27626068, PMID:27631024, PMID:27870750, PMID:28492532, PMID:28941273, PMID:29446767, PMID:31775759 NCBI chr 3:179,148,114...179,240,093
Ensembl chr 3:179,148,114...179,240,093
JBrowse link
G PRCC proline rich mitotic checkpoint control factor IAGP OMIM NCBI chr 1:156,767,535...156,800,819
Ensembl chr 1:156,750,610...156,800,815
JBrowse link
G PTEN phosphatase and tensin homolog IAGP ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1 ClinVar PMID:9467011, PMID:9915974, PMID:10866302, PMID:11504908, PMID:11875759, PMID:16773562, PMID:17526801, PMID:17942903, PMID:18767981, PMID:19457929, PMID:20085938, PMID:20300775, PMID:21659347, PMID:21822720, PMID:21824802, PMID:21828076, PMID:22266152, PMID:22320991, PMID:22327138, PMID:22595938, PMID:23335809, PMID:23399955, PMID:23470840, PMID:24778394, PMID:25157968, PMID:25527629, PMID:25741868, PMID:26619011, PMID:26798346, PMID:27477328, PMID:27535533, PMID:28475857, PMID:28492532, PMID:29359449, PMID:29706350 NCBI chr10:87,863,625...87,971,930
Ensembl chr10:87,863,625...87,971,930
JBrowse link
G RHEB Ras homolog, mTORC1 binding IAGP ClinVar Annotator: match by term: Papillary renal cell carcinoma, sporadic ClinVar PMID:26619011 NCBI chr 7:151,466,012...151,519,895
Ensembl chr 7:151,466,012...151,520,120
JBrowse link
G RNU2-1 RNA, U2 small nuclear 1 IAGP ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1 ClinVar PMID:28492532 NCBI chr17:43,233,790...43,233,977
Ensembl chr17:43,233,787...43,233,977
JBrowse link
G SDHB succinate dehydrogenase complex iron sulfur subunit B IAGP ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1 ClinVar PMID:18728283, PMID:19184535, PMID:19576851, PMID:22835832, PMID:24055113, PMID:24092654, PMID:25637381, PMID:25741868, PMID:26332594, PMID:28492532 NCBI chr 1:17,018,722...17,054,032
Ensembl chr 1:17,018,722...17,054,032
Ensembl chr 1:17,018,722...17,054,032
JBrowse link
G SF3B1 splicing factor 3b subunit 1 IAGP ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1 ClinVar PMID:26619011 NCBI chr 2:197,389,784...197,435,093
Ensembl chr 2:197,388,515...197,435,091
Ensembl chr 2:197,388,515...197,435,091
JBrowse link
G SF3B2 splicing factor 3b subunit 2 IAGP ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1 ClinVar PMID:26619011 NCBI chr11:66,052,361...66,069,308
Ensembl chr11:66,050,729...66,069,308
JBrowse link
G ST7 suppression of tumorigenicity 7 IAGP ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1 ClinVar PMID:28492532 NCBI chr 7:116,953,501...117,230,176
Ensembl chr 7:116,953,238...117,230,103
JBrowse link
G ST7-AS1 ST7 antisense RNA 1 IAGP ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1 ClinVar PMID:28492532 NCBI chr 7:116,952,446...116,954,334
Ensembl chr 7:116,952,446...116,954,334
JBrowse link
G ST7-AS2 ST7 antisense RNA 2 IAGP ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1 ClinVar PMID:28492532 NCBI chr 7:117,072,072...117,145,592
Ensembl chr 7:117,072,072...117,146,480
JBrowse link
G ST7-OT3 ST7 overlapping transcript 3 IAGP ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1 ClinVar PMID:28492532 NCBI chr 7:117,182,681...117,209,937
Ensembl chr 7:116,953,238...117,230,103
JBrowse link
G ST7-OT4 ST7 overlapping transcript 4 IAGP ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1 ClinVar PMID:28492532 NCBI chr 7:116,953,848...116,959,817
Ensembl chr 7:116,953,899...117,098,806
JBrowse link
G TP53 tumor protein p53 IAGP ClinVar Annotator: match by term: Papillary renal cell carcinoma, sporadic
ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1
ClinVar PMID:1349175, PMID:1565143, PMID:1565144, PMID:1644930, PMID:1737852, PMID:7651740, PMID:7707106, PMID:7732013, PMID:7887414, PMID:8023157, PMID:8080050, PMID:8118819, PMID:8242631, PMID:8401536, PMID:8633021, PMID:8718514, PMID:8829627, PMID:8869100, PMID:9096669, PMID:9242456, PMID:9290701, PMID:9546439, PMID:9572492, PMID:9627118, PMID:9635828, PMID:9662334, PMID:9667734, PMID:10064694, PMID:10366100, PMID:10432928, PMID:10589545, PMID:10753186, PMID:10761705, PMID:10864200, PMID:10922393, PMID:11370630, PMID:11429705, PMID:11782540, PMID:11793474, PMID:11896595, PMID:11920788, PMID:11920959, PMID:12826609, PMID:12909720, PMID:12917626, PMID:14559903, PMID:14584079, PMID:15037740, PMID:15161705, PMID:15850016, PMID:15925506, PMID:15977174, PMID:15982667, PMID:16312222, PMID:16494995, PMID:16508005, PMID:16736287, PMID:16818505, PMID:16861262, PMID:17015838, PMID:17390010, PMID:17401428, PMID:17541742, PMID:17572079, PMID:17606709, PMID:18208484, PMID:18307025, PMID:18453682, PMID:18511570, PMID:18555592, PMID:19012332, PMID:19101993, PMID:19147582, PMID:19171880, PMID:19336573, PMID:19468865, PMID:19556618, PMID:19681600, PMID:19850740, PMID:19913028, PMID:20028212, PMID:20118236, PMID:20127978, PMID:20128691, PMID:20234365, PMID:20308654, PMID:20407015, PMID:20505364, PMID:20506564, PMID:20522432, PMID:20805372, PMID:20972454, PMID:21056685, PMID:21059199, PMID:21159183, PMID:21232794, PMID:21305319, PMID:21319261, PMID:21343334, PMID:21356188, PMID:21483000, PMID:21514416, PMID:21519010, PMID:21626334, PMID:21674059, PMID:21761402, PMID:22090360, PMID:22186996, PMID:22265402, PMID:22672556, PMID:22710932, PMID:22844452, PMID:22887876, PMID:22915647, PMID:22923379, PMID:22983585, PMID:23031740, PMID:23161690, PMID:23165212, PMID:23175693, PMID:23246812, PMID:23259501, PMID:23315175, PMID:23630318, PMID:23894400, PMID:24033266, PMID:24256616, PMID:24381225, PMID:24384472, PMID:24395441, PMID:24487413, PMID:24573247, PMID:24641375, PMID:24702488, PMID:24728327, PMID:24766216, PMID:25293557, PMID:25503501, PMID:25584008, PMID:25584637, PMID:25619955, PMID:25741868, PMID:25787918, PMID:25896519, PMID:25945745, PMID:25952993, PMID:25980754, PMID:26014290, PMID:26022348, PMID:26230955, PMID:26270727, PMID:26425688, PMID:26467025, PMID:26554828, PMID:26556299, PMID:26585234, PMID:26619011, PMID:26659639, PMID:26787237, PMID:26845104, PMID:26878390, PMID:26911350, PMID:26976419, PMID:27022024, PMID:27077130, PMID:27189670, PMID:27276561, PMID:27463065, PMID:27493922, PMID:27533082, PMID:27616075, PMID:27622479, PMID:27680515, PMID:27895058, PMID:27959731, PMID:28135145, PMID:28279309, PMID:28369373, PMID:28472496, PMID:28476805, PMID:28492532, PMID:28724667, PMID:28802053, PMID:28861920, PMID:28915717, PMID:28975465, PMID:29070607, PMID:29126202, PMID:29324801, PMID:29489754, PMID:29753700, PMID:29979965, PMID:30128536, PMID:30216591, PMID:30224644, PMID:30297838, PMID:30306255, PMID:30311369, PMID:30327374, PMID:30352134, PMID:30450585, PMID:30720243, PMID:31775759 NCBI chr17:7,668,402...7,687,550
Ensembl chr17:7,661,779...7,687,538
Ensembl chr17:7,661,779...7,687,538
JBrowse link
G VHL von Hippel-Lindau tumor suppressor IAGP ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1 ClinVar PMID:7660122, PMID:7728151, PMID:7784063, PMID:7987306, PMID:7987327, PMID:8270255, PMID:8522307, PMID:8592333, PMID:8707293, PMID:8730290, PMID:8956040, PMID:9156047, PMID:9452032, PMID:9829911, PMID:9829912, PMID:10567493, PMID:10900011, PMID:11309459, PMID:11921283, PMID:12000816, PMID:12114495, PMID:14722919, PMID:14973063, PMID:14987375, PMID:15300849, PMID:15574766, PMID:17102069, PMID:17350623, PMID:18446368, PMID:18836774, PMID:19030229, PMID:19252526, PMID:19270817, PMID:19464396, PMID:19602254, PMID:20660572, PMID:21362373, PMID:21715564, PMID:22799452, PMID:23512077, PMID:24206762, PMID:24301059, PMID:25119015, PMID:25157968, PMID:25371412, PMID:25563310, PMID:25720320, PMID:25741868, PMID:25867206, PMID:26822237, PMID:27527340, PMID:27539324, PMID:27617348, PMID:28492532, PMID:28944243, PMID:29616089, PMID:30042107 NCBI chr 3:10,141,778...10,153,667
Ensembl chr 3:10,141,008...10,152,220
Ensembl chr 3:10,141,008...10,152,220
JBrowse link
G WNT2 Wnt family member 2 IAGP ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1 ClinVar PMID:28492532 NCBI chr 7:117,275,451...117,323,058
Ensembl chr 7:117,275,451...117,323,152
JBrowse link
Sporadic Papillary Renal Cell Carcinoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARAF A-Raf proto-oncogene, serine/threonine kinase IAGP ClinVar Annotator: match by term: Papillary renal cell carcinoma, sporadic ClinVar PMID:24569458, PMID:26619011 NCBI chr  X:47,561,205...47,571,908
Ensembl chr  X:47,561,100...47,571,920
JBrowse link
G BRAF B-Raf proto-oncogene, serine/threonine kinase IAGP ClinVar Annotator: match by term: Papillary renal cell carcinoma, sporadic ClinVar PMID:12068308, PMID:12198537, PMID:12447372, PMID:12460918, PMID:12460919, PMID:12619120, PMID:12644542, PMID:12670889, PMID:12794760, PMID:12960123, PMID:14513361, PMID:14602780, PMID:14679157, PMID:15001635, PMID:15035987, PMID:15126572, PMID:15181070, PMID:15342696, PMID:15356022, PMID:15386408, PMID:15687339, PMID:15998781, PMID:16015629, PMID:16174717, PMID:16187918, PMID:16772349, PMID:17374713, PMID:17488796, PMID:17785355, PMID:18398503, PMID:19001320, PMID:19010912, PMID:19018267, PMID:19238210, PMID:19404918, PMID:19537845, PMID:19561230, PMID:20008640, PMID:20350999, PMID:20413299, PMID:20619739, PMID:20630094, PMID:20818844, PMID:20823850, PMID:20857202, PMID:21107320, PMID:21107323, PMID:21129611, PMID:21156289, PMID:21163703, PMID:21426297, PMID:21483012, PMID:21502544, PMID:21639808, PMID:21641636, PMID:21683865, PMID:21975775, PMID:22038996, PMID:22048237, PMID:22113612, PMID:22180495, PMID:22281684, PMID:22351686, PMID:22356324, PMID:22389471, PMID:22448344, PMID:22536370, PMID:22586120, PMID:22608338, PMID:22649091, PMID:22663011, PMID:22735384, PMID:22743296, PMID:22773810, PMID:22805292, PMID:22972589, PMID:22997239, PMID:23020132, PMID:23031422, PMID:23251002, PMID:23302800, PMID:23325582, PMID:23470635, PMID:23524406, PMID:23549875, PMID:23614898, PMID:23685455, PMID:23812671, PMID:23833300, PMID:23845441, PMID:23918947, PMID:24033266, PMID:24107445, PMID:24112392, PMID:24163374, PMID:24388723, PMID:24446311, PMID:24508103, PMID:24512911, PMID:24576830, PMID:24583796, PMID:24586605, PMID:24594804, PMID:24670642, PMID:24717435, PMID:25024077, PMID:25037139, PMID:25079330, PMID:25157968, PMID:25265492, PMID:25265494, PMID:25370471, PMID:25399551, PMID:25950823, PMID:25989278, PMID:26619011, PMID:26678033, PMID:27404270, PMID:27480103, PMID:28854169, PMID:28891408, PMID:29925953, PMID:31779674, PMID:31891627 NCBI chr 7:140,713,328...140,924,929
Ensembl chr 7:140,719,327...140,924,929
Ensembl chr 7:140,719,327...140,924,929
JBrowse link
G CDKN2A cyclin dependent kinase inhibitor 2A IAGP ClinVar Annotator: match by term: Papillary renal cell carcinoma, sporadic ClinVar PMID:25741868, PMID:26619011 NCBI chr 9:21,967,752...21,995,324
Ensembl chr 9:21,967,753...21,995,301
JBrowse link
G ERBB2 erb-b2 receptor tyrosine kinase 2 IAGP ClinVar Annotator: match by term: Papillary renal cell carcinoma, sporadic ClinVar PMID:18413839, PMID:22046346, PMID:23220880, PMID:25157968, PMID:26619011 NCBI chr17:39,688,094...39,728,660
Ensembl chr17:39,687,914...39,730,426
JBrowse link
G FBXW7 F-box and WD repeat domain containing 7 IAGP ClinVar Annotator: match by term: Papillary renal cell carcinoma, sporadic ClinVar PMID:26619011 NCBI chr 4:152,320,544...152,536,873
Ensembl chr 4:152,320,544...152,536,092
JBrowse link
G FGFR3 fibroblast growth factor receptor 3 IAGP ClinVar Annotator: match by term: Papillary renal cell carcinoma, sporadic ClinVar PMID:8589699, PMID:8845844, PMID:9438390, PMID:9843049, PMID:10471491, PMID:11038465, PMID:11429702, PMID:11879084, PMID:15772091, PMID:17384684, PMID:19088846, PMID:19331127, PMID:19381019, PMID:19749790, PMID:20542753, PMID:21273588, PMID:22869148, PMID:23200862, PMID:24476948, PMID:25157968, PMID:25606676, PMID:25741868, PMID:26619011, PMID:28249712, PMID:28492532, PMID:30311386 NCBI chr 4:1,793,293...1,808,872
Ensembl chr 4:1,793,293...1,808,872
JBrowse link
G HRAS HRas proto-oncogene, GTPase IAGP ClinVar Annotator: match by term: Papillary renal cell carcinoma, sporadic ClinVar PMID:11150980, PMID:12210337, PMID:14608654, PMID:16155195, PMID:16170316, PMID:16329078, PMID:16372351, PMID:16443854, PMID:16835863, PMID:16881968, PMID:16969868, PMID:17054105, PMID:17250658, PMID:17412879, PMID:17979197, PMID:18039947, PMID:18247425, PMID:18470943, PMID:18978862, PMID:19206176, PMID:19371735, PMID:19382114, PMID:19669404, PMID:20660566, PMID:20979192, PMID:21834037, PMID:21850009, PMID:22087699, PMID:22317973, PMID:22499344, PMID:22683711, PMID:22926243, PMID:23751039, PMID:24033266, PMID:24129065, PMID:24169525, PMID:24224811, PMID:25157968, PMID:25741868, PMID:25914166, PMID:26619011, PMID:27195699, PMID:27589201, PMID:28027064, PMID:28139825, PMID:28390077, PMID:28492532, PMID:29073591, PMID:29493581, PMID:31775759 NCBI chr11:532,242...535,576
Ensembl chr11:532,242...537,287
JBrowse link
G LRRC56 leucine rich repeat containing 56 IAGP ClinVar Annotator: match by term: Papillary renal cell carcinoma, sporadic ClinVar PMID:11150980, PMID:12210337, PMID:14608654, PMID:16155195, PMID:16170316, PMID:16329078, PMID:16372351, PMID:16443854, PMID:16835863, PMID:16881968, PMID:16969868, PMID:17054105, PMID:17250658, PMID:17412879, PMID:17979197, PMID:18039947, PMID:18247425, PMID:18470943, PMID:18978862, PMID:19206176, PMID:19371735, PMID:19382114, PMID:19669404, PMID:20660566, PMID:20979192, PMID:21834037, PMID:21850009, PMID:22087699, PMID:22317973, PMID:22499344, PMID:22683711, PMID:22926243, PMID:23751039, PMID:24033266, PMID:24129065, PMID:24169525, PMID:24224811, PMID:25157968, PMID:25741868, PMID:25914166, PMID:26619011, PMID:27195699, PMID:27589201, PMID:28027064, PMID:28139825, PMID:28390077, PMID:28492532, PMID:29073591, PMID:29493581, PMID:31775759 NCBI chr11:518,967...554,916
Ensembl chr11:537,527...554,912
JBrowse link
G MTOR mechanistic target of rapamycin kinase IAGP ClinVar Annotator: match by term: Papillary renal cell carcinoma, sporadic ClinVar PMID:24631838, PMID:26018084, PMID:26619011, PMID:27159400, PMID:27830187 NCBI chr 1:11,106,535...11,273,497
Ensembl chr 1:11,106,535...11,262,551
JBrowse link
G MYC MYC proto-oncogene, bHLH transcription factor severity IEP mRNA:increased expression:renal cortex (human)
protein:increased expression:kidney (human)
RGD PMID:19384955, PMID:17409424 RGD:7240562, RGD:7240563 NCBI chr 8:127,735,434...127,742,951
Ensembl chr 8:127,735,434...127,742,951
JBrowse link
G PIK3CA phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha IAGP ClinVar Annotator: match by term: Papillary renal cell carcinoma, sporadic ClinVar PMID:15016963, PMID:15254419, PMID:15520168, PMID:15608678, PMID:15647370, PMID:15805248, PMID:16847462, PMID:16906227, PMID:16930767, PMID:17376864, PMID:17673550, PMID:18676830, PMID:18725974, PMID:19029981, PMID:19223544, PMID:19366826, PMID:19513541, PMID:19903786, PMID:20453058, PMID:20619739, PMID:21430269, PMID:21558396, PMID:22162582, PMID:22162589, PMID:22228622, PMID:22271473, PMID:22357840, PMID:22658544, PMID:22729223, PMID:22729224, PMID:23066039, PMID:23246288, PMID:23408298, PMID:23754335, PMID:23888070, PMID:24033266, PMID:24265155, PMID:24497998, PMID:24559322, PMID:25157968, PMID:25557259, PMID:25741868, PMID:26301495, PMID:26593112, PMID:26619011, PMID:26851524, PMID:27426476, PMID:27631024, PMID:27870750, PMID:28941273, PMID:29446767, PMID:31775759 NCBI chr 3:179,148,114...179,240,093
Ensembl chr 3:179,148,114...179,240,093
JBrowse link
G RHEB Ras homolog, mTORC1 binding IAGP ClinVar Annotator: match by term: Papillary renal cell carcinoma, sporadic ClinVar PMID:26619011 NCBI chr 7:151,466,012...151,519,895
Ensembl chr 7:151,466,012...151,520,120
JBrowse link
G TP53 tumor protein p53 IAGP ClinVar Annotator: match by term: Papillary renal cell carcinoma, sporadic ClinVar PMID:1565143, PMID:7887414, PMID:8023157, PMID:8118819, PMID:8242631, PMID:8401536, PMID:8633021, PMID:9242456, PMID:9627118, PMID:9662334, PMID:10432928, PMID:10589545, PMID:10922393, PMID:12826609, PMID:14559903, PMID:15037740, PMID:15977174, PMID:16312222, PMID:16861262, PMID:17015838, PMID:17390010, PMID:17606709, PMID:18307025, PMID:19101993, PMID:19556618, PMID:20028212, PMID:20128691, PMID:20234365, PMID:20308654, PMID:20407015, PMID:20805372, PMID:21056685, PMID:21343334, PMID:21356188, PMID:21483000, PMID:21514416, PMID:21761402, PMID:22265402, PMID:22887876, PMID:22923379, PMID:23031740, PMID:23259501, PMID:23315175, PMID:23630318, PMID:24381225, PMID:24395441, PMID:24487413, PMID:24641375, PMID:24702488, PMID:25584008, PMID:25741868, PMID:25945745, PMID:26425688, PMID:26467025, PMID:26585234, PMID:26619011, PMID:26911350, PMID:27189670, PMID:28279309, PMID:28369373, PMID:28476805, PMID:28492532, PMID:28724667, PMID:28975465, PMID:29979965, PMID:30224644, PMID:30297838, PMID:30720243, PMID:31775759 NCBI chr17:7,668,402...7,687,550
Ensembl chr17:7,661,779...7,687,538
Ensembl chr17:7,661,779...7,687,538
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  disease 18864
    disease of cellular proliferation 6853
      Neoplasms by Histologic Type 4078
        Glandular and Epithelial Neoplasms 2565
          carcinoma 2217
            papillary carcinoma 62
              papillary renal cell carcinoma 60
                Sporadic Papillary Renal Cell Carcinoma 13
Path 2
Term Annotations click to browse term
  disease 18864
    disease of anatomical entity 17349
      Urogenital Diseases 4645
        urinary system disease 1894
          kidney disease 1679
            Kidney Neoplasms 459
              kidney cancer 432
                renal carcinoma 373
                  renal cell carcinoma 367
                    papillary renal cell carcinoma 60
                      Sporadic Papillary Renal Cell Carcinoma 13
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.