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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.

Term:renal carcinoma
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Accession:DOID:4451 term browser browse the term
Definition:A kidney cancer that derives_from the lining of the proximal convoluted tubule (the very small tubes in the kidney that filter the blood and remove waste products). (DO)
Synonyms:exact_synonym: carcinoma of kidney;   kidney carcinoma
 primary_id: RDO:9002264
 xref: NCI:C124802;   NCI:C9384
For additional species annotation, visit the Alliance of Genome Resources.


show annotations for term's descendants           Sort by:
 
renal carcinoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fosl1 fos-like antigen 1 ISO mRNA:increased expression:kidney RGD PMID:9405228 RGD:2293758 NCBI chr19:5,447,698...5,455,938
Ensembl chr19:5,447,547...5,455,946
JBrowse link
G Fosl2 fos-like antigen 2 ISO mRNA:increased expression:kidney RGD PMID:9405228 RGD:2293758 NCBI chr 5:32,136,472...32,157,840
Ensembl chr 5:32,135,801...32,157,842
JBrowse link
G Jun jun proto-oncogene ISO mRNA:increased expression:kidney RGD PMID:9405228 RGD:2293758 NCBI chr 4:95,049,036...95,052,222
Ensembl chr 4:95,049,034...95,052,222
JBrowse link
G Junb jun B proto-oncogene ISO mRNA:increased expression:kidney RGD PMID:9405228 RGD:2293758 NCBI chr 8:84,976,909...84,978,748
Ensembl chr 8:84,974,484...84,978,718
Ensembl chr 8:84,974,484...84,978,718
JBrowse link
G Jund jun D proto-oncogene ISO mRNA:increased expression:kidney RGD PMID:9405228 RGD:2293758 NCBI chr 8:70,697,739...70,700,616
Ensembl chr 8:70,698,949...70,700,616
JBrowse link
G Letmd1 LETM1 domain containing 1 ISO mRNA, protein:increased expression:kidney RGD PMID:12879013 RGD:2314918 NCBI chr15:100,462,421...100,479,252
Ensembl chr15:100,469,023...100,479,164
JBrowse link
G Mcph1 microcephaly, primary autosomal recessive 1 ISO protein:decreased expression:kidney (human) RGD PMID:25197360 RGD:9589037 NCBI chr 8:18,595,116...18,808,089
Ensembl chr 8:18,595,131...18,803,189
JBrowse link
G Met met proto-oncogene ISO ClinVar Annotator: match by term: Kidney Carcinoma ClinVar PMID:9140397 PMID:9563489 PMID:9731534 PMID:9826708 PMID:10327054 More... NCBI chr 6:17,463,349...17,573,980
Ensembl chr 6:17,463,800...17,573,980
JBrowse link
G Mtor mechanistic target of rapamycin kinase ISO ClinVar Annotator: match by term: Kidney Carcinoma
ClinVar Annotator: match by term: Renal carcinoma
ClinVar PMID:24622468 PMID:24631838 PMID:26018084 PMID:26619011 PMID:27159400 More... NCBI chr 4:148,448,582...148,557,685
Ensembl chr 4:148,448,611...148,557,683
JBrowse link
chromophobe renal cell carcinoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnf1a HNF1 homeobox A ISO ClinVar Annotator: match by term: Chromophobe renal cell carcinoma ClinVar PMID:9392505 PMID:9754819 PMID:10966642 PMID:11393552 PMID:15649945 More... NCBI chr 5:114,948,980...114,971,062
Ensembl chr 5:114,948,980...114,971,094
JBrowse link
G Hnf1b HNF1 homeobox B ISO ClinVar Annotator: match by term: Chromophobe renal cell carcinoma ClinVar PMID:15649945 PMID:16371430 PMID:25536396 PMID:25700310 PMID:25741868 NCBI chr11:83,850,209...83,905,917
Ensembl chr11:83,850,063...83,905,819
JBrowse link
clear cell renal cell carcinoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ager advanced glycosylation end product-specific receptor ISO mRNA:increased expression:renal cortex (human) RGD PMID:21947243 RGD:7244181 NCBI chr17:34,597,460...34,600,937
Ensembl chr17:34,597,862...34,600,936
JBrowse link
G Atp5g2 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 (subunit 9) ISO RGD PMID:28672194 RGD:14696810 NCBI chr15:102,662,868...102,671,047
Ensembl chr15:102,662,864...102,672,352
JBrowse link
G Atp5o ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit ISO RGD PMID:28672194 RGD:14696810 NCBI chr16:91,925,223...91,931,630
Ensembl chr16:91,925,214...91,931,687
Ensembl chr16:91,925,214...91,931,687
JBrowse link
G Atp5pb ATP synthase peripheral stalk-membrane subunit b ISO RGD PMID:28672194 RGD:14696810 NCBI chr 3:105,942,698...105,959,263
Ensembl chr 3:105,942,698...105,960,099
JBrowse link
G Bax BCL2-associated X protein ISO mRNA, protein:increased expression:kidney RGD PMID:28551630 RGD:15036804 NCBI chr 7:45,461,695...45,466,903
Ensembl chr 7:45,461,697...45,466,898
JBrowse link
G Dnmt1 DNA methyltransferase (cytosine-5) 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:27292127 NCBI chr 9:20,907,206...20,959,888
Ensembl chr 9:20,907,209...20,959,888
JBrowse link
G Dnmt3a DNA methyltransferase 3A ISO CTD Direct Evidence: marker/mechanism CTD PMID:27292127 NCBI chr12:3,801,559...3,914,443
Ensembl chr12:3,806,007...3,914,443
JBrowse link
G Egln3 egl-9 family hypoxia-inducible factor 3 disease_progression ISO RGD PMID:23788753 RGD:13506731 NCBI chr12:54,178,981...54,203,874
Ensembl chr12:54,178,981...54,203,860
JBrowse link
G Eng endoglin severity ISO protein:increased expression:tumor, vasculature (human)
protein:decreased expression:kidney, tumor (human)
RGD PMID:22204709 PMID:16536758 RGD:7248775, RGD:7248780 NCBI chr 2:32,646,595...32,682,669
Ensembl chr 2:32,646,595...32,682,669
JBrowse link
G Ep300 E1A binding protein p300 severity ISO mRNA:altered expression:kidney, tumor (human)
mRNA, protein:increased expression:kidney
RGD PMID:23029358 PMID:28551630 RGD:7296925, RGD:15036804 NCBI chr15:81,586,209...81,652,077
Ensembl chr15:81,585,351...81,652,077
JBrowse link
G F2 coagulation factor II ISO protein:increased expression:brain RGD PMID:22065054 RGD:6893520 NCBI chr 2:91,612,397...91,636,457
Ensembl chr 2:91,625,320...91,636,414
JBrowse link
G Flt4 FMS-like tyrosine kinase 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25239121 NCBI chr11:49,609,679...49,652,739
Ensembl chr11:49,609,263...49,652,739
JBrowse link
G Gata1 GATA binding protein 1 disease_progression ISO RGD PMID:25230694 RGD:149735195 NCBI chr  X:7,959,260...7,976,663
Ensembl chr  X:7,959,260...7,978,071
JBrowse link
G Gata2 GATA binding protein 2 disease_progression ISO RGD PMID:25230694 RGD:149735195 NCBI chr 6:88,193,891...88,207,032
Ensembl chr 6:88,193,891...88,207,032
JBrowse link
G Gstp1 glutathione S-transferase, pi 1 ISO RGD PMID:10383153 RGD:6906878 NCBI chr19:4,035,411...4,037,912
Ensembl chr19:4,035,407...4,037,985
JBrowse link
G Hnf1a HNF1 homeobox A ISO ClinVar Annotator: match by term: Clear cell carcinoma of kidney ClinVar PMID:8866553 PMID:8945470 PMID:9032114 PMID:9045858 PMID:9075818 More... NCBI chr 5:114,948,980...114,971,062
Ensembl chr 5:114,948,980...114,971,094
JBrowse link
G Igf1r insulin-like growth factor I receptor ISO xenograph of human clear cell renal cancer cells in mouse RGD PMID:19509240 RGD:7242921 NCBI chr 7:67,952,257...68,233,668
Ensembl chr 7:67,952,827...68,233,668
JBrowse link
G Kat8 K(lysine) acetyltransferase 8 ISO mRNA, protein:decreased expression:kidney (human) RGD PMID:23394073 RGD:9586034 NCBI chr 7:127,912,517...127,925,838
Ensembl chr 7:127,912,516...127,925,837
JBrowse link
G Mmp12 matrix metallopeptidase 12 ISO RGD PMID:11576837 RGD:2290421 NCBI chr 9:7,344,397...7,360,461
Ensembl chr 9:7,344,381...7,369,499
JBrowse link
G Mthfr methylenetetrahydrofolate reductase susceptibility
severity
ISO DNA:transition, transversion:cds:g.677C>T, g.1298A>C (human) RGD PMID:21489764 PMID:20039875 RGD:6893474, RGD:6893632 NCBI chr 4:148,039,077...148,059,562
Ensembl chr 4:148,039,077...148,059,551
JBrowse link
G Myc myelocytomatosis oncogene severity ISO protein:increased expression:kidney (human) RGD PMID:21881486 RGD:7207420 NCBI chr15:61,985,341...61,990,361
Ensembl chr15:61,985,391...61,990,374
JBrowse link
G Ogg1 8-oxoguanine DNA-glycosylase 1 ISO ClinVar Annotator: match by term: Clear cell carcinoma of kidney ClinVar PMID:10987279 NCBI chr 6:113,326,972...113,334,877
Ensembl chr 6:113,326,972...113,335,068
JBrowse link
G Pak4 p21 (RAC1) activated kinase 4 disease_progression ISO RGD PMID:25744653 RGD:13504816 NCBI chr 7:28,558,819...28,598,184
Ensembl chr 7:28,558,819...28,598,185
JBrowse link
G Pak6 p21 (RAC1) activated kinase 6 disease_progression ISO RGD PMID:24715215 RGD:13506722 NCBI chr 2:118,663,045...118,698,020
Ensembl chr 2:118,663,303...118,698,020
JBrowse link
G Pbrm1 polybromo 1 ISO ClinVar Annotator: match by term: Clear cell carcinoma of kidney ClinVar PMID:25911086 NCBI chr14:31,019,138...31,121,592
Ensembl chr14:31,019,138...31,121,592
JBrowse link
G Pdgfb platelet derived growth factor, B polypeptide disease_progression ISO RGD PMID:25766258 PMID:23879920 RGD:13504817, RGD:13506650 NCBI chr15:79,995,865...80,024,614
Ensembl chr15:79,995,874...80,014,977
JBrowse link
G Pml promyelocytic leukemia ISO protein:decreased expression:kidney (human) RGD PMID:25293974 RGD:41404694 NCBI chr 9:58,217,179...58,249,796
Ensembl chr 9:58,218,076...58,249,786
JBrowse link
G Setd2 SET domain containing 2 severity ISO DNA:SNPs,loss of heterozygosity:multiple (human)
DNA:mutations:multiple (human)
RGD PMID:26864202 PMID:26891804 RGD:150429635, RGD:150429640 NCBI chr 9:110,532,500...110,618,633
Ensembl chr 9:110,532,597...110,618,633
JBrowse link
G Srsf1 serine and arginine-rich splicing factor 1 ISO mRNA:altered expression:kidney (human) RGD PMID:21082031 RGD:11039407 NCBI chr11:88,046,499...88,053,757
Ensembl chr11:88,047,373...88,053,755
JBrowse link
G Srsf2 serine and arginine-rich splicing factor 2 ISO mRNA:altered expression:kidney (human) RGD PMID:21082031 RGD:11039407 NCBI chr11:116,849,897...116,853,675
Ensembl chr11:116,849,901...116,853,094
JBrowse link
G Srsf4 serine and arginine-rich splicing factor 4 ISO mRNA:altered expression:kidney (human) RGD PMID:21082031 RGD:11039407 NCBI chr 4:131,873,530...131,901,725
Ensembl chr 4:131,873,617...131,901,706
JBrowse link
G Srsf5 serine and arginine-rich splicing factor 5 ISO mRNA:altered expression:kidney (human) RGD PMID:21082031 RGD:11039407 NCBI chr12:80,945,495...80,950,507
Ensembl chr12:80,945,504...80,950,507
JBrowse link
G Srsf6 serine and arginine-rich splicing factor 6 ISO mRNA:altered expression:kidney (human) RGD PMID:21082031 RGD:11039407 NCBI chr 2:162,931,508...162,937,121
Ensembl chr 2:162,931,528...162,937,121
JBrowse link
G Srsf7 serine and arginine-rich splicing factor 7 ISO mRNA:altered expression:kidney (human) RGD PMID:21082031 RGD:11039407 NCBI chr17:80,200,080...80,207,369
Ensembl chr17:80,200,080...80,207,307
JBrowse link
G Trp53 transformation related protein 53 ISO mRNA, protein:increased expression:kidney RGD PMID:28551630 RGD:15036804 NCBI chr11:69,580,348...69,591,873
Ensembl chr11:69,580,359...69,591,873
JBrowse link
G Vegfa vascular endothelial growth factor A ISO CTD Direct Evidence: marker/mechanism CTD PMID:25239121 NCBI chr17:46,016,993...46,032,377
Ensembl chr17:46,016,993...46,032,369
JBrowse link
hereditary renal cell carcinoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnase1 deoxyribonuclease I ISO ClinVar Annotator: match by term: Hereditary renal cell carcinoma ClinVar NCBI chr16:4,036,958...4,040,024
Ensembl chr16:4,036,942...4,040,024
JBrowse link
G Egf epidermal growth factor ISO ClinVar Annotator: match by term: Hereditary renal cell carcinoma ClinVar NCBI chr 3:129,677,574...129,755,322
Ensembl chr 3:129,677,565...129,755,316
JBrowse link
G Parp1 poly (ADP-ribose) polymerase family, member 1 ISO ClinVar Annotator: match by term: Hereditary renal cell carcinoma ClinVar NCBI chr 1:180,568,891...180,600,999
Ensembl chr 1:180,568,924...180,601,254
JBrowse link
G Sdha succinate dehydrogenase complex, subunit A, flavoprotein (Fp) ISO ClinVar Annotator: match by term: Hereditary renal cell carcinoma ClinVar PMID:28492532 PMID:28546994 NCBI chr13:74,322,255...74,350,240
Ensembl chr13:74,322,254...74,350,280
JBrowse link
G Trap1 TNF receptor-associated protein 1 ISO ClinVar Annotator: match by term: Hereditary renal cell carcinoma ClinVar NCBI chr16:4,039,971...4,077,840
Ensembl chr16:4,039,971...4,077,827
JBrowse link
nonpapillary renal cell carcinoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Camk1 calcium/calmodulin-dependent protein kinase I ISO ClinVar Annotator: match by term: Renal cell carcinoma, nonpapillary ClinVar NCBI chr 6:113,334,124...113,343,922
Ensembl chr 6:113,334,124...113,343,984
JBrowse link
G Flcn folliculin IEA
ISO
ISS
OMIM:144700
ClinVar Annotator: match by term: Renal cell carcinoma, nonpapillary
MouseDO
ClinVar
PMID:15805188 PMID:15852235 PMID:16199547 PMID:18234728 PMID:19457309 More... NCBI chr11:59,791,408...59,810,039
Ensembl chr11:59,791,408...59,810,016
JBrowse link
G Hnf1a HNF1 homeobox A ISS
ISO
OMIM:144700
ClinVar Annotator: match by term: Renal cell carcinoma, nonpapillary
MouseDO
ClinVar
PMID:25741868 NCBI chr 5:114,948,980...114,971,062
Ensembl chr 5:114,948,980...114,971,094
JBrowse link
G Hnf1b HNF1 homeobox B ISS OMIM:144700 MouseDO NCBI chr11:83,850,209...83,905,917
Ensembl chr11:83,850,063...83,905,819
JBrowse link
G Ogg1 8-oxoguanine DNA-glycosylase 1 ISS
ISO
OMIM:144700
ClinVar Annotator: match by term: Renal cell carcinoma, nonpapillary
MouseDO
ClinVar
NCBI chr 6:113,326,972...113,334,877
Ensembl chr 6:113,326,972...113,335,068
JBrowse link
G Pbrm1 polybromo 1 ISS OMIM:144700 MouseDO NCBI chr14:31,019,138...31,121,592
Ensembl chr14:31,019,138...31,121,592
JBrowse link
G Rnf139 ring finger protein 139 ISS OMIM:144700 MouseDO NCBI chr15:58,889,229...58,902,390
Ensembl chr15:58,889,229...58,907,057
JBrowse link
G Vhl von Hippel-Lindau tumor suppressor ISS OMIM:144700 MouseDO NCBI chr 6:113,623,994...113,631,634
Ensembl chr 6:113,623,959...113,631,633
JBrowse link
papillary renal cell carcinoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Araf Araf proto-oncogene, serine/threonine kinase ISO ClinVar Annotator: match by term: Papillary renal cell carcinoma, sporadic ClinVar PMID:24569458 PMID:26619011 NCBI chr  X:20,797,707...20,860,521
Ensembl chr  X:20,797,814...20,860,519
JBrowse link
G Asz1 ankyrin repeat, SAM and basic leucine zipper domain containing 1 ISO ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1 ClinVar PMID:28492532 NCBI chr 6:18,050,964...18,109,061
Ensembl chr 6:18,050,964...18,109,061
JBrowse link
G Atm ataxia telangiectasia mutated ISO ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1 ClinVar PMID:10571946 NCBI chr 9:53,437,122...53,536,828
Ensembl chr 9:53,439,149...53,536,740
JBrowse link
G Braf Braf transforming gene ISO ClinVar Annotator: match by term: Papillary renal cell carcinoma, sporadic ClinVar PMID:12068308 PMID:12198537 PMID:12447372 PMID:12460918 PMID:12460919 More... NCBI chr 6:39,603,231...39,725,658
Ensembl chr 6:39,603,237...39,725,463
JBrowse link
G Capza2 capping protein (actin filament) muscle Z-line, alpha 2 ISO ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1 ClinVar PMID:28492532 NCBI chr 6:17,637,010...17,666,972
Ensembl chr 6:17,636,234...17,666,972
JBrowse link
G Cdkn2a cyclin dependent kinase inhibitor 2A ISO ClinVar Annotator: match by term: Papillary renal cell carcinoma, sporadic ClinVar PMID:25741868 PMID:26619011 PMID:28492532 NCBI chr 4:89,274,473...89,294,619
Ensembl chr 4:89,274,471...89,294,653
JBrowse link
G Cftr cystic fibrosis transmembrane conductance regulator ISO ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1 ClinVar PMID:28492532 NCBI chr 6:18,170,687...18,322,770
Ensembl chr 6:18,170,687...18,322,768
JBrowse link
G Ctnnb1 catenin (cadherin associated protein), beta 1 ISO ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1 ClinVar PMID:26822237 NCBI chr 9:120,933,400...120,960,507
Ensembl chr 9:120,929,216...120,960,507
JBrowse link
G Eloc elongin C ISO ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1 ClinVar PMID:26619011 NCBI chr 1:16,641,725...16,657,428
Ensembl chr 1:16,641,725...16,657,042
JBrowse link
G Erbb2 erb-b2 receptor tyrosine kinase 2 ISO ClinVar Annotator: match by term: Papillary renal cell carcinoma, sporadic ClinVar PMID:18413839 PMID:22046346 PMID:23220880 PMID:25157968 PMID:26619011 NCBI chr11:98,412,484...98,437,716
Ensembl chr11:98,412,470...98,437,716
JBrowse link
G Fbxw7 F-box and WD-40 domain protein 7 ISO ClinVar Annotator: match by term: Papillary renal cell carcinoma, sporadic ClinVar PMID:26619011 NCBI chr 3:84,814,990...84,979,198
Ensembl chr 3:84,815,268...84,979,198
JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 ISO ClinVar Annotator: match by term: Papillary renal cell carcinoma, sporadic
ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1
ClinVar PMID:8589699 PMID:8845844 PMID:9438390 PMID:9843049 PMID:10471491 More... NCBI chr 5:33,721,724...33,737,068
Ensembl chr 5:33,721,674...33,737,068
JBrowse link
G Hras Harvey rat sarcoma virus oncogene ISO ClinVar Annotator: match by term: Papillary renal cell carcinoma, sporadic
ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1
ClinVar PMID:11150980 PMID:16155195 PMID:16170316 PMID:16329078 PMID:16372351 More... NCBI chr 7:141,189,934...141,194,019
Ensembl chr 7:141,189,105...141,194,005
JBrowse link
G LOC111674480 Cftr promoter region ISO ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1 ClinVar PMID:28492532 NCBI chr 6:18,169,702...18,171,128 JBrowse link
G Lrrc56 leucine rich repeat containing 56 ISO ClinVar Annotator: match by term: Papillary renal cell carcinoma, sporadic ClinVar PMID:11150980 PMID:16155195 PMID:16170316 PMID:16329078 PMID:16372351 More... NCBI chr 7:141,194,111...141,210,055
Ensembl chr 7:141,194,157...141,210,055
JBrowse link
G Met met proto-oncogene ISO ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1 ClinVar
OMIM
PMID:1104268 PMID:9140397 PMID:9326629 PMID:9536098 PMID:9563489 More... NCBI chr 6:17,463,349...17,573,980
Ensembl chr 6:17,463,800...17,573,980
JBrowse link
G Msh2 mutS homolog 2 ISO ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1 ClinVar PMID:18325052 PMID:21926548 PMID:24506336 PMID:24763289 PMID:25637381 More... NCBI chr17:87,672,532...87,723,713
Ensembl chr17:87,672,330...87,723,713
JBrowse link
G Mtor mechanistic target of rapamycin kinase ISO ClinVar Annotator: match by term: Papillary renal cell carcinoma, sporadic
ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1
ClinVar PMID:24631838 PMID:25741868 PMID:26018084 PMID:26619011 PMID:27159400 More... NCBI chr 4:148,448,582...148,557,685
Ensembl chr 4:148,448,611...148,557,683
JBrowse link
G Nfe2l2 nuclear factor, erythroid derived 2, like 2 ISO ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1 ClinVar PMID:26619011 NCBI chr 2:75,675,513...75,704,663
Ensembl chr 2:75,675,513...75,704,641
JBrowse link
G Nras neuroblastoma ras oncogene ISO ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1 ClinVar PMID:1654209 PMID:2278970 PMID:2674680 PMID:3122217 PMID:6587382 More... NCBI chr 3:103,058,285...103,067,914
Ensembl chr 3:103,058,285...103,067,914
JBrowse link
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha ISO ClinVar Annotator: match by term: Papillary renal cell carcinoma, sporadic
ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1
ClinVar PMID:15016963 PMID:15254419 PMID:15520168 PMID:15608678 PMID:15647370 More... NCBI chr 3:32,397,065...32,466,112
Ensembl chr 3:32,397,671...32,468,486
JBrowse link
G Prcc papillary renal cell carcinoma (translocation-associated) ISO OMIM NCBI chr 3:87,858,903...87,885,562
Ensembl chr 3:87,858,903...87,885,608
JBrowse link
G Pten phosphatase and tensin homolog ISO ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1 ClinVar PMID:9467011 PMID:9915974 PMID:10866302 PMID:11504908 PMID:11875759 More... NCBI chr19:32,757,577...32,826,160
Ensembl chr19:32,757,497...32,826,160
JBrowse link
G Rheb Ras homolog enriched in brain ISO ClinVar Annotator: match by term: Papillary renal cell carcinoma, sporadic ClinVar PMID:26619011 NCBI chr 5:24,802,823...24,842,361
Ensembl chr 5:24,802,823...24,842,624
JBrowse link
G Sdhb succinate dehydrogenase complex, subunit B, iron sulfur (Ip) ISO ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1 ClinVar PMID:18728283 PMID:19576851 PMID:22835832 PMID:24055113 PMID:24092654 More... NCBI chr 4:140,961,271...140,979,198
Ensembl chr 4:140,961,203...140,979,193
JBrowse link
G Sf3b1 splicing factor 3b, subunit 1 ISO ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1 ClinVar PMID:26619011 NCBI chr 1:54,985,169...55,027,501
Ensembl chr 1:54,985,169...55,027,481
JBrowse link
G Sf3b2 splicing factor 3b, subunit 2 ISO ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1 ClinVar PMID:26619011 NCBI chr19:5,273,921...5,295,457
Ensembl chr19:5,273,932...5,295,455
JBrowse link
G St7 suppression of tumorigenicity 7 ISO ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1 ClinVar PMID:28492532 NCBI chr 6:17,693,901...17,943,023
Ensembl chr 6:17,692,933...17,943,025
JBrowse link
G Trp53 transformation related protein 53 ISO ClinVar Annotator: match by term: Papillary renal cell carcinoma, sporadic
ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1
ClinVar PMID:1349175 PMID:1565143 PMID:1565144 PMID:1644930 PMID:1737852 More... NCBI chr11:69,580,348...69,591,873
Ensembl chr11:69,580,359...69,591,873
JBrowse link
G Vhl von Hippel-Lindau tumor suppressor ISO ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1 ClinVar PMID:7660122 PMID:7728151 PMID:7784063 PMID:7987306 PMID:7987327 More... NCBI chr 6:113,623,994...113,631,634
Ensembl chr 6:113,623,959...113,631,633
JBrowse link
G Wnt2 wingless-type MMTV integration site family, member 2 ISO ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1 ClinVar PMID:28492532 NCBI chr 6:17,985,474...18,032,772
Ensembl chr 6:17,988,940...18,030,585
JBrowse link
renal cell carcinoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb1a ATP-binding cassette, sub-family B (MDR/TAP), member 1A disease_progression ISO DNA:polymorphism: :3435C>T (human) RGD PMID:17177989 PMID:12089380 RGD:2315557, RGD:2315559 NCBI chr 5:8,567,091...8,748,575
Ensembl chr 5:8,660,077...8,748,575
JBrowse link
G Abcg2 ATP binding cassette subfamily G member 2 (Junior blood group) susceptibility ISO DNA:polymorphism: :p.Q141K (human) RGD PMID:15906349 RGD:2315569 NCBI chr 6:58,584,491...58,692,451
Ensembl chr 6:58,584,523...58,695,676
JBrowse link
G Ache acetylcholinesterase ISO CTD Direct Evidence: marker/mechanism CTD PMID:18482720 NCBI chr 5:137,288,247...137,294,466
Ensembl chr 5:137,287,519...137,294,466
JBrowse link
G Acy1 aminoacylase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15108329 NCBI chr 9:106,432,981...106,438,236
Ensembl chr 9:106,432,981...106,438,319
JBrowse link
G Adgrb1 adhesion G protein-coupled receptor B1 severity ISO RGD PMID:21511296 RGD:13831349 NCBI chr15:74,516,196...74,589,465
Ensembl chr15:74,516,195...74,589,465
JBrowse link
G Adipoq adiponectin, C1Q and collagen domain containing ISO CTD Direct Evidence: marker/mechanism CTD PMID:29723618 NCBI chr16:23,146,536...23,157,968
Ensembl chr16:23,146,536...23,158,028
JBrowse link
G Afp alpha fetoprotein ISO RGD PMID:1714107 RGD:2292042 NCBI chr 5:90,490,714...90,508,907
Ensembl chr 5:90,490,737...90,508,907
JBrowse link
G Agtr1a angiotensin II receptor, type 1a severity ISO protein:increased expression:kidney RGD PMID:21102591 RGD:6903280 NCBI chr13:30,336,356...30,382,867
Ensembl chr13:30,336,441...30,382,867
JBrowse link
G Agtr2 angiotensin II receptor, type 2 disease_progression ISO protein:increased expression:kidney RGD PMID:21102591 RGD:6903280 NCBI chr  X:21,484,624...21,488,833
Ensembl chr  X:21,484,544...21,489,164
JBrowse link
G Ahnak AHNAK nucleoprotein (desmoyokin) ISO CTD Direct Evidence: marker/mechanism CTD PMID:22138691 NCBI chr19:8,989,284...9,076,935
Ensembl chr19:8,989,284...9,076,914
JBrowse link
G Akap13 A kinase (PRKA) anchor protein 13 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22138691 NCBI chr 7:75,455,526...75,754,609
Ensembl chr 7:75,455,534...75,754,609
JBrowse link
G Akt1 thymoma viral proto-oncogene 1 ISO protein:increased serine phosphorylation:kidney RGD PMID:17681738 RGD:1643331 NCBI chr12:112,653,821...112,674,884
Ensembl chr12:112,653,821...112,674,884
JBrowse link
G Akt3 thymoma viral proto-oncogene 3 susceptibility ISO DNA:missense mutation:exon, intron:multiple RGD PMID:23378641 RGD:13503319 NCBI chr 1:177,020,076...177,261,781
Ensembl chr 1:177,020,073...177,258,203
JBrowse link
G Alad aminolevulinate, delta-, dehydratase ISO CTD Direct Evidence: marker/mechanism CTD PMID:21799727 NCBI chr 4:62,505,984...62,520,063
Ensembl chr 4:62,509,169...62,519,918
JBrowse link
G Aldh1a1 aldehyde dehydrogenase family 1, subfamily A1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15108329 NCBI chr19:20,492,583...20,643,463
Ensembl chr19:20,492,715...20,643,465
JBrowse link
G Alk anaplastic lymphoma kinase ISO CTD Direct Evidence: marker/mechanism CTD PMID:22743654 NCBI chr17:71,868,988...72,604,702
Ensembl chr17:71,868,972...72,604,627
JBrowse link
G Alox12 arachidonate 12-lipoxygenase ISO protein:increased expression:kidney RGD PMID:14654968 RGD:2315610 NCBI chr11:70,241,457...70,255,380
Ensembl chr11:70,241,457...70,255,353
JBrowse link
G Alox12b arachidonate 12-lipoxygenase, 12R type ISO CTD Direct Evidence: marker/mechanism CTD PMID:30258081 NCBI chr11:69,157,072...69,169,791
Ensembl chr11:69,156,989...69,169,792
JBrowse link
G Alox5 arachidonate 5-lipoxygenase ISO CTD Direct Evidence: marker/mechanism CTD PMID:30258081 NCBI chr 6:116,410,071...116,461,178
Ensembl chr 6:116,410,077...116,461,178
JBrowse link
G Amacr alpha-methylacyl-CoA racemase ISO RGD PMID:14707866 RGD:2315633 NCBI chr15:10,981,756...10,996,624
Ensembl chr15:10,981,756...10,996,626
JBrowse link
G Ang angiogenin, ribonuclease, RNase A family, 5 ISO protein:increased expression:serum RGD PMID:18808740 RGD:2325699 NCBI chr14:51,091,077...51,102,009
Ensembl chr14:51,091,150...51,102,009
JBrowse link
G Angpt1 angiopoietin 1 severity ISO mRNA:altered expression:kidney RGD PMID:17505508 RGD:1643335 NCBI chr15:42,424,667...42,676,977
Ensembl chr15:42,424,723...42,676,977
JBrowse link
G Anxa1 annexin A1 ISO RGD PMID:14587099 RGD:7421570 NCBI chr19:20,373,434...20,390,671
Ensembl chr19:20,373,428...20,390,944
JBrowse link
G Anxa2 annexin A2 ISO RGD PMID:14587099 RGD:7421570 NCBI chr 9:69,453,683...69,491,792
Ensembl chr 9:69,453,620...69,491,795
JBrowse link
G Anxa4 annexin A4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15108329 NCBI chr 6:86,736,840...86,793,634
Ensembl chr 6:86,736,840...86,793,584
JBrowse link
G Ap5m1 adaptor-related protein complex 5, mu 1 subunit ISO CTD Direct Evidence: marker/mechanism CTD PMID:23797736 NCBI chr14:49,066,408...49,094,114
Ensembl chr14:49,066,097...49,094,234
JBrowse link
G Apaf1 apoptotic peptidase activating factor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17133271 NCBI chr10:90,989,311...91,082,743
Ensembl chr10:90,989,311...91,082,770
JBrowse link
G Apc APC, WNT signaling pathway regulator onset
disease_progression
severity
IMP
ISO
DNA,protein:LOH,decreased expression: :
DNA:LOH: :
RGD PMID:16116480 PMID:10426194 PMID:15203750 RGD:7242056, RGD:7242060, RGD:7242059 NCBI chr18:34,220,297...34,322,190
Ensembl chr18:34,220,924...34,322,552
JBrowse link
G Aprt adenine phosphoribosyl transferase ISO CTD Direct Evidence: marker/mechanism CTD PMID:15108329 NCBI chr 8:122,574,637...122,576,907
Ensembl chr 8:122,574,635...122,576,909
JBrowse link
G Arnt aryl hydrocarbon receptor nuclear translocator treatment ISO DNA:missense mutation: :pF446L (human) RGD PMID:27595394 RGD:13503335 NCBI chr 3:95,434,367...95,497,240
Ensembl chr 3:95,434,388...95,497,240
JBrowse link
G Asb15 ankyrin repeat and SOCS box-containing 15 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22138691 NCBI chr 6:24,528,144...24,573,164
Ensembl chr 6:24,528,144...24,573,164
JBrowse link
G Asz1 ankyrin repeat, SAM and basic leucine zipper domain containing 1 ISO ClinVar Annotator: match by term: Renal cell carcinoma ClinVar PMID:28492532 NCBI chr 6:18,050,964...18,109,061
Ensembl chr 6:18,050,964...18,109,061
JBrowse link
G Atp5g2 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 (subunit 9) ISO DNA:hypermethylation:promoter RGD PMID:21132003 RGD:14696812 NCBI chr15:102,662,868...102,671,047
Ensembl chr15:102,662,864...102,672,352
JBrowse link
G Aurka aurora kinase A ISO mRNA, protein:increased expression:kidney RGD PMID:17349527 RGD:1643346 NCBI chr 2:172,356,190...172,370,886
Ensembl chr 2:172,356,190...172,370,535
JBrowse link
G Bad BCL2-associated agonist of cell death ISO RGD PMID:15851405 RGD:2292677 NCBI chr19:6,941,861...6,951,905
Ensembl chr19:6,941,861...6,951,899
JBrowse link
G Bak1 BCL2-antagonist/killer 1 severity ISO RGD PMID:9894249 RGD:2315703 NCBI chr17:27,019,812...27,028,627
Ensembl chr17:27,019,810...27,029,009
JBrowse link
G Bap1 Brca1 associated protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22138691 PMID:22683710 PMID:23797736 PMID:25231345 NCBI chr14:31,251,352...31,259,930
Ensembl chr14:31,251,450...31,259,944
JBrowse link
G Bche butyrylcholinesterase ISO CTD Direct Evidence: marker/mechanism CTD PMID:18482720 NCBI chr 3:73,635,805...73,708,436
Ensembl chr 3:73,635,808...73,708,415
JBrowse link
G Bcl2 B cell leukemia/lymphoma 2 disease_progression ISO RGD PMID:17482919 PMID:18283311 RGD:2293019, RGD:2298896 NCBI chr 1:106,538,176...106,714,290
Ensembl chr 1:106,538,178...106,714,274
JBrowse link
G Bcl2l1 BCL2-like 1 ISO RGD PMID:12025227 RGD:1643483 NCBI chr 2:152,758,732...152,833,803
Ensembl chr 2:152,780,668...152,831,728
JBrowse link
G Bik BCL2-interacting killer ISO protein:decreased expression:kidney RGD PMID:16322756 RGD:14394818 NCBI chr15:83,526,790...83,544,635
Ensembl chr15:83,526,862...83,544,634
JBrowse link
G Birc2 baculoviral IAP repeat-containing 2 disease_progression ISO mRNA:altered expression:kidney RGD PMID:17154176 RGD:1643526 NCBI chr 9:7,818,226...7,837,131
Ensembl chr 9:7,818,227...7,837,064
JBrowse link
G Birc3 baculoviral IAP repeat-containing 3 ISO mRNA:altered expression:kidney RGD PMID:17154176 RGD:1643526 NCBI chr 9:7,847,468...7,873,205
Ensembl chr 9:7,848,699...7,873,186
JBrowse link
G Birc5 baculoviral IAP repeat-containing 5 disease_progression ISO mRNA:splice variant
CTD Direct Evidence: therapeutic
protein:increased expression:kidney
CTD PMID:16188142 PMID:12115583 PMID:17363528 RGD:2293108, RGD:2293102 NCBI chr11:117,849,237...117,855,743
Ensembl chr11:117,849,251...117,855,743
JBrowse link
G Birc7 baculoviral IAP repeat-containing 7 (livin) ISO CTD Direct Evidence: marker/mechanism CTD PMID:17437058 PMID:25401301 NCBI chr 2:180,928,609...180,934,010
Ensembl chr 2:180,929,023...180,934,010
JBrowse link
G Bmp4 bone morphogenetic protein 4 severity ISO RGD PMID:17644140 RGD:1643589 NCBI chr14:46,383,525...46,390,669
Ensembl chr14:46,383,520...46,390,669
JBrowse link
G Bmp6 bone morphogenetic protein 6 ISO mRNA,protein:increased expression:kidney RGD PMID:20016212 RGD:7242419 NCBI chr13:38,345,716...38,500,314
Ensembl chr13:38,345,107...38,500,302
JBrowse link
G Bmp7 bone morphogenetic protein 7 disease_progression ISO RGD PMID:17644140 RGD:1643589 NCBI chr 2:172,868,012...172,940,321
Ensembl chr 2:172,868,012...172,940,321
JBrowse link
G Bsg basigin disease_progression ISO protein:increased expression:kidney RGD PMID:17021824 RGD:2289052 NCBI chr10:79,704,358...79,711,979
Ensembl chr10:79,704,491...79,711,969
JBrowse link
G Btg2 BTG anti-proliferation factor 2 ISO mRNA:decreased expression:kidney RGD PMID:14996721 RGD:2289069 NCBI chr 1:134,074,865...134,079,155
Ensembl chr 1:134,075,170...134,079,120
JBrowse link
G Btg3 BTG anti-proliferation factor 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19221000 NCBI chr16:78,359,860...78,377,181
Ensembl chr16:78,332,637...78,377,192
JBrowse link
G C4a complement component 4A (Rodgers blood group) disease_progression ISO RGD PMID:19150565 RGD:5688259 NCBI chr17:34,809,092...34,823,460
Ensembl chr17:34,809,092...34,823,464
JBrowse link
G C4b complement component 4B (Chido blood group) disease_progression ISO RGD PMID:19150565 RGD:5688259 NCBI chr17:34,728,139...34,743,902
Ensembl chr17:34,728,380...34,743,882
JBrowse link
G Capg capping protein (actin filament), gelsolin-like ISO CTD Direct Evidence: marker/mechanism CTD PMID:15108329 NCBI chr 6:72,538,282...72,562,983
Ensembl chr 6:72,544,391...72,562,983
JBrowse link
G Capza2 capping protein (actin filament) muscle Z-line, alpha 2 ISO ClinVar Annotator: match by term: Renal cell carcinoma ClinVar PMID:28492532 NCBI chr 6:17,637,010...17,666,972
Ensembl chr 6:17,636,234...17,666,972
JBrowse link
G Car9 carbonic anhydrase 9 disease_progression ISO DNA, mRNA:hypomethylation, increased expression:promoter, kidney
protein:increased expression:serum, urine
RGD PMID:11506497 PMID:12966427 PMID:12883698 PMID:18464292 RGD:2293201, RGD:2293198, RGD:2293199, RGD:2293191 NCBI chr 4:43,507,026...43,513,729
Ensembl chr 4:43,506,966...43,513,729
JBrowse link
G Card11 caspase recruitment domain family, member 11 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22138691 NCBI chr 5:140,872,999...141,000,596
Ensembl chr 5:140,872,990...141,000,582
JBrowse link
G Casp2 caspase 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20208132 NCBI chr 6:42,264,902...42,282,508
Ensembl chr 6:42,264,985...42,282,508
JBrowse link
G Casp3 caspase 3 ISO RGD PMID:17513560 RGD:2293308 NCBI chr 8:46,617,291...46,639,698
Ensembl chr 8:46,617,291...46,639,689
JBrowse link
G Cav1 caveolin 1, caveolae protein disease_progression ISO protein:increased expression:kidney
ClinVar Annotator: match by term: Renal cell carcinoma
ClinVar PMID:28492532 PMID:15247769 RGD:2289107 NCBI chr 6:17,306,335...17,341,328
Ensembl chr 6:17,306,335...17,341,452
JBrowse link
G Ccnb1 cyclin B1 disease_progression ISO protein:increased expression:kidney RGD PMID:16557593 RGD:2315941 NCBI chr13:100,778,739...100,786,486
Ensembl chr13:100,778,650...100,786,570
JBrowse link
G Ccnd1 cyclin D1 ISO DNA:polymorphism RGD PMID:15538282 PMID:17924468 RGD:2289130, RGD:2289127 NCBI chr 7:144,929,931...144,939,831
Ensembl chr 7:144,929,931...144,939,925
JBrowse link
G Ccnd3 cyclin D3 disease_progression ISO RGD PMID:18679818 RGD:2316007 NCBI chr17:47,505,051...47,599,689
Ensembl chr17:47,505,051...47,599,691
JBrowse link
G Ccne1 cyclin E1 ISO mRNA, protein:increased expression:kidney RGD PMID:17726548 RGD:2289228 NCBI chr 7:38,097,984...38,107,490
Ensembl chr 7:38,097,984...38,107,534
JBrowse link
G Cd40 CD40 antigen treatment IMP
IDA
RGD PMID:15282531 PMID:12594303 PMID:20426873 RGD:7248440, RGD:11522744, RGD:7248724 NCBI chr 2:165,055,614...165,071,654
Ensembl chr 2:165,055,627...165,072,948
JBrowse link
G Cd44 CD44 antigen disease_progression
severity
ISO protein:increased expression:kidney RGD PMID:12833185 PMID:17284111 RGD:2289360, RGD:2289351 NCBI chr 2:102,811,141...102,901,669
Ensembl chr 2:102,811,141...102,901,665
JBrowse link
G Cd46 CD46 antigen, complement regulatory protein ISO RGD PMID:10744069 RGD:2293550 NCBI chr 1:195,038,971...195,098,784
Ensembl chr 1:195,036,826...195,092,249
JBrowse link
G Cdc14b CDC14 cell division cycle 14B severity ISO mRNA:decreased expression:kidney: RGD PMID:24619757 RGD:10059341 NCBI chr13:64,192,545...64,274,988
Ensembl chr13:64,189,268...64,275,290
JBrowse link
G Cdh1 cadherin 1 disease_progression
onset
ISO protein:decreased expression, altered localization:kidney, nucleus
DNA:LOH: :
RGD PMID:17906660 PMID:15203750 RGD:2289489, RGD:7242059 NCBI chr 8:106,603,350...106,670,247
Ensembl chr 8:106,603,351...106,670,246
JBrowse link
G Cdk2 cyclin-dependent kinase 2 ISO RGD PMID:16740772 RGD:2293561 NCBI chr10:128,697,938...128,705,051
Ensembl chr10:128,697,939...128,705,031
JBrowse link
G Cdk4 cyclin-dependent kinase 4 ISO protein:increased expression:kidney RGD PMID:15991006 RGD:2293579 NCBI chr10:127,063,535...127,067,288
Ensembl chr10:127,063,534...127,067,920
JBrowse link
G Cdkn1b cyclin-dependent kinase inhibitor 1B disease_progression ISO protein:decreased expression:kidney
mRNA, protein:increased expression:kidney
RGD PMID:17924468 PMID:18425369 PMID:18495610 RGD:2289127, RGD:2293590, RGD:2293589 NCBI chr 6:134,920,401...134,925,525
Ensembl chr 6:134,920,401...134,925,513
JBrowse link
G Cdkn2a cyclin dependent kinase inhibitor 2A ISO DNA:gene instability
DNA:deletion
DNA, protein:hypermethylation, increased expression:promoter, kidney
RGD PMID:11839561 PMID:17201148 PMID:15232742 RGD:1298747, RGD:2289680, RGD:2289699 NCBI chr 4:89,274,473...89,294,619
Ensembl chr 4:89,274,471...89,294,653
JBrowse link
G Cdkn2b cyclin dependent kinase inhibitor 2B ISO DNA:loss of heterozygosity, deletion RGD PMID:10391689 RGD:7248758 NCBI chr 4:89,306,289...89,311,032
Ensembl chr 4:89,306,299...89,311,039
JBrowse link
G Cftr cystic fibrosis transmembrane conductance regulator ISO ClinVar Annotator: match by term: Renal cell carcinoma ClinVar PMID:28492532 NCBI chr 6:18,170,687...18,322,770
Ensembl chr 6:18,170,687...18,322,768
JBrowse link
G Cnn2 calponin 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15108329 NCBI chr10:79,988,600...79,995,400
Ensembl chr10:79,988,584...79,996,062
JBrowse link
G Comt catechol-O-methyltransferase susceptibility ISO DNA:polymorphism:exon RGD PMID:17220335 RGD:2289716 NCBI chr16:18,406,882...18,426,716
Ensembl chr16:18,406,886...18,426,852
JBrowse link
G Cpq carboxypeptidase Q ISO CTD Direct Evidence: marker/mechanism CTD PMID:25401301 NCBI chr15:33,083,129...33,594,552
Ensembl chr15:33,083,129...33,594,552
JBrowse link
G Crabp1 cellular retinoic acid binding protein I ISO CTD Direct Evidence: marker/mechanism CTD PMID:16254461 NCBI chr 9:54,764,748...54,773,110
Ensembl chr 9:54,764,748...54,773,110
JBrowse link
G Cradd CASP2 and RIPK1 domain containing adaptor with death domain ISO CTD Direct Evidence: marker/mechanism CTD PMID:20208132 NCBI chr10:95,174,739...95,324,138
Ensembl chr10:95,174,746...95,324,133
JBrowse link
G Crp C-reactive protein, pentraxin-related disease_progression ISO RGD PMID:22958305 RGD:6904212 NCBI chr 1:172,698,056...172,699,966
Ensembl chr 1:172,698,055...172,833,031
JBrowse link
G Cryab crystallin, alpha B ISO CTD Direct Evidence: marker/mechanism CTD PMID:15108329 NCBI chr 9:50,745,951...50,756,636
Ensembl chr 9:50,751,325...50,756,636
JBrowse link
G Csf1r colony stimulating factor 1 receptor ISO mRNA:increased expression:kidney RGD PMID:18592004 PMID:22052465 RGD:2299092, RGD:7257566 NCBI chr18:61,105,572...61,131,139
Ensembl chr18:61,100,598...61,132,149
JBrowse link
G Csmd3 CUB and Sushi multiple domains 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22138691 PMID:23797736 NCBI chr15:47,580,638...48,792,558
Ensembl chr15:47,580,637...48,792,063
JBrowse link
G Ctla4 cytotoxic T-lymphocyte-associated protein 4 ISO DNA:SNPs:exons:rs3087243, rs231775 (human) RGD PMID:17678726 RGD:7204723 NCBI chr 1:60,909,025...60,915,832
Ensembl chr 1:60,887,000...60,915,832
JBrowse link
G Ctnna1 catenin (cadherin associated protein), alpha 1 disease_progression ISO protein:decreased expression:kidney RGD PMID:9355975 RGD:2289799 NCBI chr18:35,118,902...35,254,776
Ensembl chr18:35,118,859...35,254,779
JBrowse link
G Ctnnb1 catenin (cadherin associated protein), beta 1 disease_progression ISO protein:increased expression:kidney RGD PMID:15330191 PMID:11831984 RGD:2289794, RGD:2289835 NCBI chr 9:120,933,400...120,960,507
Ensembl chr 9:120,929,216...120,960,507
JBrowse link
G Ctsb cathepsin B ISO CTD Direct Evidence: marker/mechanism CTD PMID:15108329 NCBI chr14:63,122,462...63,145,923
Ensembl chr14:63,122,462...63,145,923
JBrowse link
G Ctsd cathepsin D ISO CTD Direct Evidence: marker/mechanism CTD PMID:15108329 NCBI chr 7:142,375,910...142,387,827
Ensembl chr 7:142,375,911...142,388,038
JBrowse link
G Cul7 cullin 7 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22138691 NCBI chr17:46,650,338...46,664,364
Ensembl chr17:46,650,337...46,664,364
JBrowse link
G Cxcr2 chemokine (C-X-C motif) receptor 2 IMP RGD PMID:16210641 RGD:7257682 NCBI chr 1:74,153,994...74,161,246
Ensembl chr 1:74,153,989...74,161,246
JBrowse link
G Cyp1a1 cytochrome P450, family 1, subfamily a, polypeptide 1 no_association ISO DNA:polymorphism: :p.I462V (human)
DNA:SNPs: :6235T>C, 4889A>G, 4887C>A (human)
RGD PMID:22296350 PMID:11115552 PMID:9631944 PMID:22000673 RGD:7257729, RGD:7296938, RGD:7296939, RGD:7296937 NCBI chr 9:57,687,928...57,703,824
Ensembl chr 9:57,687,928...57,703,824
JBrowse link
G Dapk1 death associated protein kinase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17133271 NCBI chr13:60,601,723...60,763,191
Ensembl chr13:60,601,947...60,763,191
JBrowse link
G Dnhd1 dynein heavy chain domain 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23797736 NCBI chr 7:105,650,776...105,721,800
Ensembl chr 7:105,650,827...105,721,799
JBrowse link
G Ebag9 estrogen receptor-binding fragment-associated gene 9 disease_progression IMP RGD PMID:15867365 RGD:2289852 NCBI chr15:44,619,227...44,641,538
Ensembl chr15:44,619,175...44,641,515
JBrowse link
G Eef2 eukaryotic translation elongation factor 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15108329 NCBI chr10:81,176,631...81,182,509
Ensembl chr10:81,176,631...81,182,498
JBrowse link
G Egfr epidermal growth factor receptor ISO protein:increased expression:tumor RGD PMID:18467719 RGD:2293730 NCBI chr11:16,752,203...16,913,907
Ensembl chr11:16,752,203...16,918,158
JBrowse link
G Egln1 egl-9 family hypoxia-inducible factor 1 ISO protein:increased expression:kidney RGD PMID:20978146 RGD:13504705 NCBI chr 8:124,908,587...124,949,254
Ensembl chr 8:124,908,587...124,949,324
JBrowse link
G Egln2 egl-9 family hypoxia-inducible factor 2 ISO protein:increased expression:kidney RGD PMID:20978146 RGD:13504705 NCBI chr 7:27,158,658...27,166,802
Ensembl chr 7:27,158,658...27,166,802
JBrowse link
G Egln3 egl-9 family hypoxia-inducible factor 3 ISO protein:increased expression:serum RGD PMID:20676679 RGD:13506732 NCBI chr12:54,178,981...54,203,874
Ensembl chr12:54,178,981...54,203,860
JBrowse link
G Eloc elongin C ISO CTD Direct Evidence: marker/mechanism CTD PMID:23797736 NCBI chr 1:16,641,725...16,657,428
Ensembl chr 1:16,641,725...16,657,042
JBrowse link
G Epas1 endothelial PAS domain protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21131975 PMID:12750296 RGD:10395373 NCBI chr17:86,753,864...86,833,410
Ensembl chr17:86,753,700...86,833,410
JBrowse link
G Erbb2 erb-b2 receptor tyrosine kinase 2 ISO CTD Direct Evidence: marker/mechanism
mRNA:decreased expression:kidney
CTD PMID:10897039 PMID:17296437 PMID:15360049 RGD:2289930, RGD:2289987 NCBI chr11:98,412,484...98,437,716
Ensembl chr11:98,412,470...98,437,716
JBrowse link
G Erbb4 erb-b2 receptor tyrosine kinase 4 ISO mRNA, protein:decreased expression:kidney RGD PMID:15360049 RGD:2289987 NCBI chr 1:68,031,884...69,108,576
Ensembl chr 1:68,032,186...69,108,059
JBrowse link
G Fas Fas (TNF receptor superfamily member 6) ISO
IAGP
DNA:missense mutations:exon
protein:increased expression:serum
RGD PMID:17031406 PMID:11435457 PMID:12460460 PMID:10654915 RGD:2290099, RGD:2290132, RGD:2290131, RGD:2290133 NCBI chr19:34,290,647...34,327,775
Ensembl chr19:34,290,666...34,327,772
JBrowse link
G Fasl Fas ligand (TNF superfamily, member 6) IAGP
IDA
RGD PMID:11435457 PMID:17641033 RGD:2290132, RGD:2290051 NCBI chr 1:161,780,691...161,788,495
Ensembl chr 1:161,780,689...161,788,495
JBrowse link
G Fgf2 fibroblast growth factor 2 disease_progression ISO protein:increased expression:serum RGD PMID:1718278 RGD:2290303 NCBI chr 3:37,348,477...37,410,106
Ensembl chr 3:37,348,346...37,410,108
JBrowse link
G Fgfr1 fibroblast growth factor receptor 1 disease_progression ISO RGD PMID:25900027 RGD:11352663 NCBI chr 8:25,518,759...25,575,718
Ensembl chr 8:25,513,654...25,575,718
JBrowse link
G Fh1 fumarate hydratase 1 ISO RGD PMID:17211469 RGD:6907135 NCBI chr 1:175,601,378...175,625,635
Ensembl chr 1:175,600,374...175,625,635
JBrowse link
G Fhit fragile histidine triad gene ISO RGD PMID:17539022 PMID:10530564 RGD:2289870, RGD:2289903 NCBI chr14:9,550,092...11,162,061
Ensembl chr14:9,550,092...11,162,035
JBrowse link
G Flcn folliculin treatment ISO CTD Direct Evidence: marker/mechanism OMIM
CTD
PMID:12204536 PMID:16369488 PMID:14769940 RGD:13605606, RGD:1302869 NCBI chr11:59,791,408...59,810,039
Ensembl chr11:59,791,408...59,810,016
JBrowse link
G Flt1 FMS-like tyrosine kinase 1 ISO CTD Direct Evidence: therapeutic
protein:increased expression:kidney, blood, myeloid cell
CTD PMID:16596207 PMID:11846206 PMID:18566400 RGD:2289960, RGD:2301250 NCBI chr 5:147,561,604...147,726,438
Ensembl chr 5:147,561,604...147,726,011
JBrowse link
G Fmn2 formin 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22138691 NCBI chr 1:174,501,752...174,822,729
Ensembl chr 1:174,501,825...174,822,729
JBrowse link
G Fn1 fibronectin 1 severity ISO RGD PMID:20860816 RGD:7205637 NCBI chr 1:71,585,473...71,653,280
Ensembl chr 1:71,585,520...71,653,200
JBrowse link
G Fpgt fucose-1-phosphate guanylyltransferase ISO CTD Direct Evidence: marker/mechanism CTD PMID:23797736 NCBI chr 3:155,084,915...155,093,387
Ensembl chr 3:155,084,918...155,093,403
JBrowse link
G Frs2 fibroblast growth factor receptor substrate 2 disease_progression ISO RGD PMID:25900027 RGD:11352663 NCBI chr10:117,070,127...117,148,474
Ensembl chr10:117,069,427...117,148,534
JBrowse link
G Ghrh growth hormone releasing hormone ISO RGD PMID:10962030 RGD:2301426 NCBI chr 2:157,329,496...157,348,725
Ensembl chr 2:157,329,497...157,347,506
JBrowse link
G Gjb1 gap junction protein, beta 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18264126 NCBI chr  X:101,376,376...101,385,629
Ensembl chr  X:101,376,378...101,385,629
JBrowse link
G Grb7 growth factor receptor bound protein 7 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23797736 NCBI chr11:98,446,834...98,455,373
Ensembl chr11:98,446,394...98,455,373
JBrowse link
G Gsr glutathione reductase ISO protein:decreased expression:kidney: RGD PMID:18312938 RGD:7257550 NCBI chr 8:33,653,238...33,698,162
Ensembl chr 8:33,652,523...33,698,163
JBrowse link
G Gstm1 glutathione S-transferase, mu 1 susceptibility ISO CTD Direct Evidence: marker/mechanism CTD PMID:18566013 PMID:26656529 PMID:14504370 RGD:2293845 NCBI chr 3:108,012,250...108,017,973
Ensembl chr 3:108,012,255...108,017,973
JBrowse link
G Gstp1 glutathione S-transferase, pi 1 ISO protein:increased expression:kidney
CTD Direct Evidence: marker/mechanism
CTD PMID:15108329 PMID:20464042 RGD:8547946 NCBI chr19:4,035,411...4,037,912
Ensembl chr19:4,035,407...4,037,985
JBrowse link
G Gstt1 glutathione S-transferase, theta 1 susceptibility ISO CTD Direct Evidence: marker/mechanism CTD PMID:18566013 PMID:26656529 PMID:14504370 RGD:2293845 NCBI chr10:75,783,813...75,798,584
Ensembl chr10:75,783,813...75,798,584
JBrowse link
G H2-Eb1 histocompatibility 2, class II antigen E beta susceptibility
disease_progression
ISO RGD PMID:9044854 PMID:12771724 PMID:10895068 RGD:2314704, RGD:2314695, RGD:2314701 NCBI chr17:34,305,867...34,316,674
Ensembl chr17:34,305,867...34,316,674
JBrowse link
G Hars histidyl-tRNA synthetase ISO CTD Direct Evidence: marker/mechanism CTD PMID:15108329 NCBI chr18:36,766,528...36,783,205
Ensembl chr18:36,766,528...36,783,205
JBrowse link
G Havcr1 hepatitis A virus cellular receptor 1 disease_progression ISO RGD PMID:23352434 RGD:7245470 NCBI chr11:46,739,822...46,779,578
Ensembl chr11:46,735,080...46,779,578
JBrowse link
G Havcr2 hepatitis A virus cellular receptor 2 susceptibility ISO DNA:polymorphisms: :-574G>T, +4259T>G (human) RGD PMID:22472081 RGD:7245505 NCBI chr11:46,454,931...46,481,255
Ensembl chr11:46,454,935...46,481,255
JBrowse link
G Hif1a hypoxia inducible factor 1, alpha subunit disease_progression ISO RGD PMID:19302703 RGD:2306222 NCBI chr12:73,901,324...73,947,554
Ensembl chr12:73,901,375...73,947,530
JBrowse link
G Hnf1a HNF1 homeobox A ISO OMIM NCBI chr 5:114,948,980...114,971,062
Ensembl chr 5:114,948,980...114,971,094
JBrowse link
G Hnf1b HNF1 homeobox B ISO OMIM NCBI chr11:83,850,209...83,905,917
Ensembl chr11:83,850,063...83,905,819
JBrowse link
G Hoxb13 homeobox B13 disease_progression ISO DNA:hypermethylation RGD PMID:16278676 RGD:2314729 NCBI chr11:96,194,316...96,196,610
Ensembl chr11:96,194,316...96,197,447
JBrowse link
G Hspa9 heat shock protein 9 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15108329 NCBI chr18:34,937,414...34,954,351
Ensembl chr18:34,937,414...34,954,357
JBrowse link
G Hspb1 heat shock protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15108329 NCBI chr 5:135,887,919...135,889,563
Ensembl chr 5:135,887,919...135,889,563
JBrowse link
G Hspd1 heat shock protein 1 (chaperonin) ISO CTD Direct Evidence: marker/mechanism CTD PMID:15108329 NCBI chr 1:55,077,833...55,088,243
Ensembl chr 1:55,077,835...55,088,243
JBrowse link
G Igf1r insulin-like growth factor I receptor ISO RGD PMID:17952403 RGD:7242846 NCBI chr 7:67,952,257...68,233,668
Ensembl chr 7:67,952,827...68,233,668
JBrowse link
G Igfbp3 insulin-like growth factor binding protein 3 ISO RGD PMID:18076934 RGD:2290003 NCBI chr11:7,206,086...7,215,498
Ensembl chr11:7,206,086...7,213,923
JBrowse link
G Igfbp7 insulin-like growth factor binding protein 7 ISO mRNA:decreased expression:kidney RGD PMID:10854235 RGD:1626565 NCBI chr 5:77,349,240...77,408,045
Ensembl chr 5:77,349,240...77,408,041
JBrowse link
G Il13 interleukin 13 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22317767 NCBI chr11:53,631,323...53,634,702
Ensembl chr11:53,631,324...53,634,702
JBrowse link
G Il1rn interleukin 1 receptor antagonist ISO RGD PMID:17031403 RGD:6907413 NCBI chr 2:24,336,860...24,351,491
Ensembl chr 2:24,336,853...24,351,494
JBrowse link
G Il2 interleukin 2 ISO RGD PMID:21812652 RGD:5147871 NCBI chr 3:37,120,713...37,125,954
Ensembl chr 3:37,120,523...37,125,959
JBrowse link
G Il4ra interleukin 4 receptor, alpha susceptibility
disease_progression
ISO DNA:polymorphism:cds:p.I50V (human)
CTD Direct Evidence: marker/mechanism
CTD PMID:22317767 PMID:30472377 PMID:22317767 PMID:12171893 RGD:7207066, RGD:7207070 NCBI chr 7:125,552,271...125,579,474
Ensembl chr 7:125,552,120...125,579,474
JBrowse link
G Il6 interleukin 6 ISO CTD Direct Evidence: marker/mechanism CTD PMID:7834629 NCBI chr 5:30,013,114...30,019,975
Ensembl chr 5:30,013,114...30,019,981
JBrowse link
G Il6ra interleukin 6 receptor, alpha ISO CTD Direct Evidence: marker/mechanism CTD PMID:7834629 NCBI chr 3:89,869,324...89,913,196
Ensembl chr 3:89,864,059...89,913,196
JBrowse link
G Inpp4b inositol polyphosphate-4-phosphatase, type II ISO CTD Direct Evidence: marker/mechanism CTD PMID:29415082 NCBI chr 8:81,342,266...82,134,312
Ensembl chr 8:81,342,556...82,127,914
JBrowse link
G Insr insulin receptor ISO RGD PMID:15753986 RGD:2290462 NCBI chr 8:3,150,922...3,279,649
Ensembl chr 8:3,122,061...3,279,617
JBrowse link
G Jun jun proto-oncogene ISO RGD PMID:16006965 RGD:1549443 NCBI chr 4:95,049,036...95,052,222
Ensembl chr 4:95,049,034...95,052,222
JBrowse link
G Jup junction plakoglobin ISO RGD PMID:15701841 PMID:9891472 RGD:2291866, RGD:2291890 NCBI chr11:100,368,856...100,397,839
Ensembl chr11:100,368,958...100,397,763
JBrowse link
G Kank1 KN motif and ankyrin repeat domains 1 ISO DNA, mRNA, protein:hypermethylation, decreased expression:kidney RGD PMID:12133830 RGD:2315654 NCBI chr19:25,236,732...25,434,498
Ensembl chr19:25,236,975...25,434,496
JBrowse link
G Kcnh1 potassium voltage-gated channel, subfamily H (eag-related), member 1 ISO protein:increased expression:kidney (human) RGD PMID:18777199 RGD:9693695 NCBI chr 1:192,189,144...192,510,159
Ensembl chr 1:192,190,774...192,510,159
JBrowse link
G Kcnma1 potassium large conductance calcium-activated channel, subfamily M, alpha member 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23797736 NCBI chr14:23,292,288...24,005,110
Ensembl chr14:23,289,431...24,014,491
JBrowse link
G Kdm4c lysine (K)-specific demethylase 4C ISO DNA:deletion:cds (human) RGD PMID:22483639 RGD:9587741 NCBI chr 4:74,242,497...74,405,864
Ensembl chr 4:74,242,497...74,405,860
JBrowse link
G Kdm5c lysine (K)-specific demethylase 5C ISO CTD Direct Evidence: marker/mechanism CTD PMID:22138691 NCBI chr  X:152,233,198...152,279,102
Ensembl chr  X:152,233,020...152,274,535
JBrowse link
G Kdm6a lysine (K)-specific demethylase 6A ISO mRNA, protein:increased expression:kidney (human) RGD PMID:21654818 PMID:23057811 RGD:6907137, RGD:9587837 NCBI chr  X:18,160,862...18,279,936
Ensembl chr  X:18,162,575...18,279,936
JBrowse link
G Kdm6b KDM1 lysine (K)-specific demethylase 6B ISO mRNA, protein:increased expression:kidney (human) RGD PMID:23057811 RGD:9587837 NCBI chr11:69,398,508...69,420,367
Ensembl chr11:69,398,508...69,413,675
JBrowse link
G Kdr kinase insert domain protein receptor treatment IMP RGD PMID:17653245 PMID:16763608 PMID:17332933 RGD:2301756, RGD:126925190, RGD:8552363 NCBI chr 5:75,932,827...75,979,072
Ensembl chr 5:75,932,827...75,978,458
JBrowse link
G Keap1 kelch-like ECH-associated protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23797736 NCBI chr 9:21,229,730...21,239,332
Ensembl chr 9:21,229,730...21,239,361
JBrowse link
G Kit KIT proto-oncogene receptor tyrosine kinase ISO chromophobe RCC only
papillary RCC only
RGD PMID:15780567 PMID:15073597 RGD:2292414, RGD:2292421 NCBI chr 5:75,574,987...75,656,722
Ensembl chr 5:75,574,916...75,656,722
JBrowse link
G Klk6 kallikrein related-peptidase 6 ISO protein:decreased expression:kidney RGD PMID:16340244 RGD:2314864 NCBI chr 7:43,824,438...43,832,027
Ensembl chr 7:43,824,499...43,832,030
JBrowse link
G Kras Kirsten rat sarcoma viral oncogene homolog ISO mRNA:increased expression:kidney RGD PMID:11851621 RGD:2314914 NCBI chr 6:145,216,699...145,250,420
Ensembl chr 6:145,216,699...145,250,239
JBrowse link
G Krt32 keratin 32 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23797736 NCBI chr11:100,080,848...100,088,269
Ensembl chr11:100,080,848...100,088,226
JBrowse link
G Krt7 keratin 7 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15108329 PMID:16927643 NCBI chr15:101,412,403...101,427,806
Ensembl chr15:101,411,043...101,430,313
JBrowse link
G Krt8 keratin 8 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15108329 NCBI chr15:101,996,711...102,004,342
Ensembl chr15:101,996,698...102,004,482
JBrowse link
G L1cam L1 cell adhesion molecule ISO CTD Direct Evidence: marker/mechanism CTD PMID:21097529 NCBI chr  X:73,853,778...73,880,838
Ensembl chr  X:73,853,778...73,896,105
JBrowse link
G Ldhb lactate dehydrogenase B ISO CTD Direct Evidence: marker/mechanism CTD PMID:15108329 NCBI chr 6:142,490,249...142,507,957
Ensembl chr 6:142,490,249...142,507,957
JBrowse link
G Lep leptin resistance ISO RGD PMID:19278051 RGD:6907119 NCBI chr 6:29,060,221...29,073,876
Ensembl chr 6:29,060,220...29,073,877
JBrowse link
G Lman2l lectin, mannose-binding 2-like ISO CTD Direct Evidence: marker/mechanism CTD PMID:23797736 NCBI chr 1:36,418,900...36,445,271
Ensembl chr 1:36,419,871...36,445,271
JBrowse link
G Lnpep leucyl/cystinyl aminopeptidase ISO RGD PMID:17692401 RGD:2314919 NCBI chr17:17,527,723...17,624,489
Ensembl chr17:17,521,410...17,625,050
JBrowse link
G Lrp1b low density lipoprotein-related protein 1B ISO CTD Direct Evidence: marker/mechanism CTD PMID:22138691 NCBI chr 2:40,595,290...42,653,598
Ensembl chr 2:40,595,246...42,653,624
JBrowse link
G Lrrk2 leucine-rich repeat kinase 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22138691 NCBI chr15:91,672,791...91,816,124
Ensembl chr15:91,673,175...91,816,120
JBrowse link
G Ltf lactotransferrin ISO RGD PMID:23201854 RGD:7243106 NCBI chr 9:111,019,292...111,042,766
Ensembl chr 9:111,019,271...111,042,767
JBrowse link
G M6pr mannose-6-phosphate receptor, cation dependent ISO CTD Direct Evidence: marker/mechanism CTD PMID:23797736 NCBI chr 6:122,308,720...122,317,680
Ensembl chr 6:122,308,720...122,317,680
JBrowse link
G Manf mesencephalic astrocyte-derived neurotrophic factor susceptibility ISO RGD PMID:8649854 RGD:1599220 NCBI chr 9:106,888,753...106,891,938
Ensembl chr 9:106,838,312...106,891,979
JBrowse link
G Map2k1 mitogen-activated protein kinase kinase 1 ISO RGD PMID:7664295 PMID:18172299 RGD:2292629, RGD:2292630 NCBI chr 9:64,185,769...64,253,605
Ensembl chr 9:64,185,770...64,253,631
JBrowse link
G Mapk1 mitogen-activated protein kinase 1 susceptibility ISO DNA:missense mutation: :multiple RGD PMID:22517515 RGD:13504815 NCBI chr16:16,983,382...17,047,453
Ensembl chr16:16,983,382...17,047,453
JBrowse link
G Met met proto-oncogene ISO ClinVar Annotator: match by term: Renal cell carcinoma
CTD Direct Evidence: marker/mechanism
ClinVar
CTD
PMID:1104268 PMID:9140397 PMID:9326629 PMID:9536098 PMID:9563489 More... RGD:1600122 NCBI chr 6:17,463,349...17,573,980
Ensembl chr 6:17,463,800...17,573,980
JBrowse link
G Mgp matrix Gla protein disease_progression ISO RGD PMID:1399132 RGD:2293578 NCBI chr 6:136,872,435...136,875,823
Ensembl chr 6:136,872,435...136,875,823
JBrowse link
G Mitf melanogenesis associated transcription factor ISO CTD Direct Evidence: marker/mechanism CTD PMID:22012259 NCBI chr 6:97,807,002...98,021,360
Ensembl chr 6:97,807,052...98,021,349
JBrowse link
G Mlh1 mutL homolog 1 ISO protein:decreased expression:kidney RGD PMID:16426918 RGD:2293509 NCBI chr 9:111,228,228...111,271,786
Ensembl chr 9:111,228,228...111,271,791
JBrowse link
G Mllt10 myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23797736 NCBI chr 2:18,055,160...18,212,390
Ensembl chr 2:18,055,237...18,212,388
JBrowse link
G Mmp1a matrix metallopeptidase 1a (interstitial collagenase) susceptibility
no_association
ISO DNA:insertion:promoter:g.-1607insG (human) RGD PMID:12845675 PMID:17980059 RGD:7207023, RGD:7207082 NCBI chr 9:7,464,141...7,476,869
Ensembl chr 9:7,464,141...7,476,869
JBrowse link
G Mmp1b matrix metallopeptidase 1b (interstitial collagenase) no_association
susceptibility
ISO DNA:insertion:promoter:g.-1607insG (human) RGD PMID:12845675 PMID:17980059 RGD:7207023 RGD:7207082 NCBI chr 9:7,367,670...7,388,026
Ensembl chr 9:7,368,239...7,388,047
JBrowse link
G Mmp2 matrix metallopeptidase 2 disease_progression ISO protein:increased expression:kidney
mRNA:decreased expression:kidney
RGD PMID:17572184 PMID:18035688 RGD:2290359, RGD:2290358 NCBI chr 8:92,827,290...92,853,421
Ensembl chr 8:92,827,291...92,853,420
JBrowse link
G Mmp3 matrix metallopeptidase 3 ISO DNA:missense mutation:cds:p.E45K rs679620 (human) RGD PMID:15319295 PMID:19551141 RGD:7207067, RGD:7241233 NCBI chr 9:7,445,822...7,455,975
Ensembl chr 9:7,445,822...7,455,975
JBrowse link
G Mmp9 matrix metallopeptidase 9 ISO mRNA:increased expression:kidney RGD PMID:18035688 RGD:2290358 NCBI chr 2:164,940,326...164,955,850
Ensembl chr 2:164,940,780...164,955,850
JBrowse link
G Mok MOK protein kinase ISO mRNA:increased expression:kidney RGD PMID:15900605 RGD:7243170 NCBI chr12:110,807,798...110,840,962
Ensembl chr12:110,807,798...110,840,939
JBrowse link
G Msgn1 mesogenin 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23797736 NCBI chr12:11,208,382...11,208,948
Ensembl chr12:11,208,360...11,208,972
JBrowse link
G Msh2 mutS homolog 2 ISO protein:decreased expression:kidney RGD PMID:16426918 RGD:2293509 NCBI chr17:87,672,532...87,723,713
Ensembl chr17:87,672,330...87,723,713
JBrowse link
G Mthfr methylenetetrahydrofolate reductase susceptibility ISO DNA:missense mutation:cds:p.A222V (rs1801133) (human) RGD PMID:18098291 RGD:6893654 NCBI chr 4:148,039,077...148,059,562
Ensembl chr 4:148,039,077...148,059,551
JBrowse link
G Mtor mechanistic target of rapamycin kinase ISO ClinVar Annotator: match by term: Renal cell cancer
ClinVar Annotator: match by term: Renal cell carcinoma
CTD Direct Evidence: marker/mechanism
ClinVar
CTD
PMID:23797736 PMID:24631838 PMID:26018084 PMID:26619011 PMID:27159400 More... RGD:7207420 NCBI chr 4:148,448,582...148,557,685
Ensembl chr 4:148,448,611...148,557,683
JBrowse link
G Muc1 mucin 1, transmembrane disease_progression ISO RGD PMID:10390012 RGD:7245968 NCBI chr 3:89,229,056...89,233,381
Ensembl chr 3:89,229,057...89,233,381
JBrowse link
G Muc4 mucin 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23797736 NCBI chr16:32,735,886...32,782,391
Ensembl chr16:32,735,886...32,782,391
JBrowse link
G Myc myelocytomatosis oncogene ISO mRNA:increased expression:kidney (human)
protein:increased expression:kidney (rat)
RGD PMID:21982273 PMID:18055543 RGD:7207793, RGD:7207841 NCBI chr15:61,985,341...61,990,361
Ensembl chr15:61,985,391...61,990,374
JBrowse link
G Nav3 neuron navigator 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22138691 NCBI chr10:109,681,260...110,455,722
Ensembl chr10:109,681,259...110,456,204
JBrowse link
G Ndrg1 N-myc downstream regulated gene 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15108329 NCBI chr15:66,929,318...66,969,641
Ensembl chr15:66,929,318...66,969,640
JBrowse link
G Nf2 neurofibromin 2 IAGP
IEA
ISO
OMIM:300854
CTD Direct Evidence: marker/mechanism
MouseDO
CTD
PMID:25401301 PMID:19487675 RGD:2315000 NCBI chr11:4,757,639...4,849,544
Ensembl chr11:4,765,845...4,849,536
JBrowse link
G Nlrp12 NLR family, pyrin domain containing 12 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23797736 NCBI chr 7:3,218,643...3,249,771
Ensembl chr 7:3,218,784...3,249,740
JBrowse link
G Nme1 NME/NM23 nucleoside diphosphate kinase 1 disease_progression ISO RGD PMID:9663430 RGD:2299059 NCBI chr11:93,958,925...93,968,272
Ensembl chr11:93,956,979...93,968,521
JBrowse link
G Nnmt nicotinamide N-methyltransferase ISO mRNA:increased expression:kidney RGD PMID:17070307 RGD:2299120 NCBI chr 9:48,538,002...48,607,655
Ensembl chr 9:48,591,877...48,605,153
JBrowse link
G Nr3c1 nuclear receptor subfamily 3, group C, member 1 severity
treatment
ISO RGD PMID:21531004 PMID:18181043 RGD:7174727, RGD:7174733 NCBI chr18:39,410,545...39,519,421
Ensembl chr18:39,410,545...39,519,421
JBrowse link
G Nras neuroblastoma ras oncogene ISO ClinVar Annotator: match by term: Renal cell carcinoma, somatic
ClinVar Annotator: match by term: Hypernephroma
ClinVar PMID:1654209 PMID:2278970 PMID:2674680 PMID:3122217 PMID:6587382 More... NCBI chr 3:103,058,285...103,067,914
Ensembl chr 3:103,058,285...103,067,914
JBrowse link
G Ogg1 8-oxoguanine DNA-glycosylase 1 ISO OMIM PMID:18218111 PMID:10987279 RGD:2317140, RGD:1600295 NCBI chr 6:113,326,972...113,334,877
Ensembl chr 6:113,326,972...113,335,068
JBrowse link
G Olfr1257 olfactory receptor 1257 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23797736 NCBI chr 2:89,880,828...89,881,757
Ensembl chr 2:89,878,437...89,883,026
JBrowse link
G Pak1 p21 (RAC1) activated kinase 1 ISO protein:increased expression:kidney
CTD Direct Evidence: marker/mechanism
CTD PMID:17621631 PMID:17621631 RGD:2299159 NCBI chr 7:97,788,541...97,912,381
Ensembl chr 7:97,788,541...97,912,381
JBrowse link
G Pbrm1 polybromo 1 ISO CTD Direct Evidence: marker/mechanism OMIM
CTD
PMID:22138691 PMID:23797736 PMID:21654818 RGD:6907137 NCBI chr14:31,019,138...31,121,592
Ensembl chr14:31,019,138...31,121,592
JBrowse link
G Pcna proliferating cell nuclear antigen severity ISO RGD PMID:11369057 RGD:2315008 NCBI chr 2:132,249,286...132,253,180
Ensembl chr 2:132,249,162...132,253,314
JBrowse link
G Pdcd1 programmed cell death 1 disease_progression ISO RGD PMID:17363529 RGD:7248680 NCBI chr 1:94,038,305...94,052,553
Ensembl chr 1:94,038,305...94,052,553
JBrowse link
G Pdgfra platelet derived growth factor receptor, alpha polypeptide disease_progression ISO protein:increased expression:kidney RGD PMID:12866380 RGD:2292157 NCBI chr 5:75,151,322...75,198,206
Ensembl chr 5:75,152,292...75,198,215
JBrowse link
G Pdgfrb platelet derived growth factor receptor, beta polypeptide ISO mRNA:increased expression:kidney RGD PMID:15994946 PMID:16865223 RGD:2292198, RGD:2290496 NCBI chr18:61,045,127...61,085,067
Ensembl chr18:61,045,150...61,085,061
JBrowse link
G Pdhb pyruvate dehydrogenase (lipoamide) beta ISO CTD Direct Evidence: marker/mechanism CTD PMID:25401301 NCBI chr14:8,165,991...8,173,303
Ensembl chr14:8,165,996...8,173,025
JBrowse link
G Pdpn podoplanin disease_progression ISO RGD PMID:18291512 RGD:2292239 NCBI chr 4:143,267,409...143,299,564
Ensembl chr 4:143,267,431...143,299,564
JBrowse link
G Pdxdc1 pyridoxal-dependent decarboxylase domain containing 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25401301 NCBI chr16:13,833,145...13,903,176
Ensembl chr16:13,833,148...13,903,131
JBrowse link
G Pebp1 phosphatidylethanolamine binding protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25329396 NCBI chr 5:117,282,651...117,287,564
Ensembl chr 5:117,282,654...117,287,625
JBrowse link
G Pgf placental growth factor disease_progression ISO protein:increased expression:plasma RGD PMID:14981951 RGD:13506645 NCBI chr12:85,166,637...85,177,785
Ensembl chr12:85,166,635...85,177,790
JBrowse link
G Pgk1 phosphoglycerate kinase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15108329 NCBI chr  X:106,187,100...106,203,699
Ensembl chr  X:106,187,100...106,203,699
JBrowse link
G Pidd1 p53 induced death domain protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20208132 NCBI chr 7:141,438,113...141,447,565
Ensembl chr 7:141,438,113...141,444,025
JBrowse link
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha ISO CTD Direct Evidence: marker/mechanism
ClinVar Annotator: match by term: Renal adenocarcinoma
ClinVar Annotator: match by term: Renal cell cancer
ClinVar Annotator: match by term: Renal cell carcinoma
ClinVar Annotator: match by term: Renal cell carcinoma, somatic
CTD
ClinVar
PMID:15016963 PMID:15254419 PMID:15520168 PMID:15608678 PMID:15647370 More... NCBI chr 3:32,397,065...32,466,112
Ensembl chr 3:32,397,671...32,468,486
JBrowse link
G Pik3r1 phosphoinositide-3-kinase regulatory subunit 1 disease_progression ISO RGD PMID:25757764 RGD:13504823 NCBI chr13:101,680,761...101,768,217
Ensembl chr13:101,680,563...101,768,217
JBrowse link
G Plau plasminogen activator, urokinase severity ISO mRNA:increased expression:kidney (human) RGD PMID:20544684 RGD:7241133 NCBI chr14:20,836,662...20,843,388
Ensembl chr14:20,836,660...20,843,385
JBrowse link
G Pld2 phospholipase D2 ISO protein:increased expression:kidney RGD PMID:11185526 RGD:2299898 NCBI chr11:70,539,492...70,558,110
Ensembl chr11:70,540,064...70,558,110
JBrowse link
G Pmepa1 prostate transmembrane protein, androgen induced 1 ISO mRNA:increased expression:kidney RGD PMID:11568975 RGD:2315108 NCBI chr 2:173,224,458...173,276,731
Ensembl chr 2:173,224,458...173,276,533
JBrowse link
G Pnkd paroxysmal nonkinesiogenic dyskinesia ISO CTD Direct Evidence: marker/mechanism CTD PMID:25401301 NCBI chr 1:74,284,599...74,353,692
Ensembl chr 1:74,284,930...74,353,694
JBrowse link
G Pomc pro-opiomelanocortin-alpha ISO CTD Direct Evidence: marker/mechanism CTD PMID:2844640 NCBI chr12:3,954,945...3,960,643
Ensembl chr12:3,954,951...3,960,642
JBrowse link
G Ppat phosphoribosyl pyrophosphate amidotransferase ISO protein:increased activity:tumor (rat) RGD PMID:476627 RGD:5135050 NCBI chr 5:76,913,249...76,951,578
Ensembl chr 5:76,913,249...76,951,578
JBrowse link
G Pramex1 PRAME like, X-linked 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16179254 NCBI chr  X:135,612,954...135,627,705
Ensembl chr  X:135,613,002...135,627,705
JBrowse link
G Prcc papillary renal cell carcinoma (translocation-associated) ISO CTD Direct Evidence: marker/mechanism CTD NCBI chr 3:87,858,903...87,885,562
Ensembl chr 3:87,858,903...87,885,608
JBrowse link
G Psmb9 proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2) ISO DNA:snp:promoter:g.-151G>T (human) RGD PMID:11788900 RGD:9999148 NCBI chr17:34,182,030...34,187,330
Ensembl chr17:34,181,987...34,187,764
JBrowse link
G Pten phosphatase and tensin homolog disease_progression ISO ClinVar Annotator: match by term: Renal cell cancer
ClinVar Annotator: match by term: Hypernephroma
ClinVar Annotator: match by term: Renal cell carcinoma
protein:decreased expression:kidney (rat)
CTD Direct Evidence: marker/mechanism
ClinVar
CTD
PMID:9467011 PMID:9915974 PMID:10866302 PMID:11504908 PMID:11875759 More... RGD:1643331, RGD:12802360, RGD:2292513, RGD:2292500 NCBI chr19:32,757,577...32,826,160
Ensembl chr19:32,757,497...32,826,160
JBrowse link
G Ptgs1 prostaglandin-endoperoxide synthase 1 ISO mRNA:increased expression:kidney RGD PMID:12708469 RGD:2300212 NCBI chr 2:36,216,742...36,258,593
Ensembl chr 2:36,230,426...36,252,272
JBrowse link
G Ptgs2 prostaglandin-endoperoxide synthase 2 disease_progression ISO mRNA:decreased expression:kidney
CTD Direct Evidence: marker/mechanism
CTD PMID:12664575 PMID:12708469 PMID:17899436 RGD:2300212, RGD:2300204 NCBI chr 1:150,100,031...150,108,234
Ensembl chr 1:150,100,031...150,108,227
JBrowse link
G Pvalb parvalbumin ISO CTD Direct Evidence: marker/mechanism CTD PMID:16927643 NCBI chr15:78,191,112...78,206,400
Ensembl chr15:78,191,114...78,206,400
JBrowse link
G Rassf1 Ras association (RalGDS/AF-6) domain family member 1 ISO DNA:hypermethylation:promoter RGD PMID:17645803 PMID:12222680 RGD:2299866, RGD:2291977 NCBI chr 9:107,551,434...107,562,267
Ensembl chr 9:107,551,555...107,562,267
JBrowse link
G Rb1 RB transcriptional corepressor 1 disease_progression ISO RGD PMID:11549509 RGD:2299893 NCBI chr14:73,192,858...73,325,951
Ensembl chr14:73,183,673...73,325,822
JBrowse link
G Rela v-rel reticuloendotheliosis viral oncogene homolog A (avian) ISO CTD Direct Evidence: marker/mechanism
protein:increased expression:kidney
CTD PMID:18089796 PMID:17290398 PMID:12663495 RGD:2298755, RGD:2298771 NCBI chr19:5,637,442...5,648,134
Ensembl chr19:5,637,483...5,648,130
JBrowse link
G Rnf139 ring finger protein 139 ISO OMIM PMID:9689122 PMID:17539022 RGD:1599629, RGD:2289870 NCBI chr15:58,889,229...58,902,390
Ensembl chr15:58,889,229...58,907,057
JBrowse link
G Rpl14 ribosomal protein L14 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23797736 NCBI chr 9:120,571,517...120,574,653
Ensembl chr 9:120,571,444...120,574,654
JBrowse link
G Ryr1 ryanodine receptor 1, skeletal muscle ISO CTD Direct Evidence: marker/mechanism CTD PMID:22138691 NCBI chr 7:29,003,340...29,125,179
Ensembl chr 7:29,003,344...29,125,179
JBrowse link
G Scarb1 scavenger receptor class B, member 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21131975 NCBI chr 5:125,277,087...125,341,094
Ensembl chr 5:125,277,087...125,341,094
JBrowse link
G Sdhb succinate dehydrogenase complex, subunit B, iron sulfur (Ip) ISO RGD PMID:21771581 RGD:6907134 NCBI chr 4:140,961,271...140,979,198
Ensembl chr 4:140,961,203...140,979,193
JBrowse link
G Sdhd succinate dehydrogenase complex, subunit D, integral membrane protein ISO RGD PMID:21771581 RGD:6907134 NCBI chr 9:50,596,340...50,603,849
Ensembl chr 9:50,596,357...50,603,812
JBrowse link
G Setd2 SET domain containing 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22138691 PMID:23797736 PMID:21654818 RGD:6907137 NCBI chr 9:110,532,500...110,618,633
Ensembl chr 9:110,532,597...110,618,633
JBrowse link
G Sfrp1 secreted frizzled-related protein 1 ISO mRNA:decreased expression:kidney RGD PMID:20420713 RGD:4107084 NCBI chr 8:23,411,383...23,449,632
Ensembl chr 8:23,411,502...23,449,632
JBrowse link
G Sfrp2 secreted frizzled-related protein 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18404682 NCBI chr 3:83,765,750...83,774,314
Ensembl chr 3:83,766,321...83,774,316
JBrowse link
G Shank1 SH3 and multiple ankyrin repeat domains 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22138691 NCBI chr 7:44,308,916...44,360,094
Ensembl chr 7:44,310,253...44,360,572
JBrowse link
G Skp2 S-phase kinase-associated protein 2 disease_progression ISO RGD PMID:18922157 RGD:2315038 NCBI chr15:9,111,982...9,155,425
Ensembl chr15:9,111,985...9,155,425
JBrowse link
G Slc2a1 solute carrier family 2 (facilitated glucose transporter), member 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:7921415 NCBI chr 4:119,108,745...119,137,330
Ensembl chr 4:119,108,711...119,137,983
JBrowse link
G Slc49a4 solute carrier family 49 member 4 susceptibility ISO DNA:translocation:intron:t(2;3)(q35;q21) RGD PMID:11912179 RGD:1601072 NCBI chr16:35,694,062...35,769,370
Ensembl chr16:35,694,062...35,769,356
JBrowse link
G Slc5a3 solute carrier family 5 (inositol transporters), member 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25401301 NCBI chr16:92,058,322...92,087,473
Ensembl chr16:92,058,322...92,087,473
JBrowse link
G Smad2 SMAD family member 2 severity ISO protein:decreased expression:kidney RGD PMID:11332076 RGD:2299973 NCBI chr18:76,241,090...76,311,748
Ensembl chr18:76,241,580...76,310,963
JBrowse link
G Smad4 SMAD family member 4 severity ISO protein:decreased expression:kidney RGD PMID:11332076 RGD:2299973 NCBI chr18:73,634,790...73,703,791
Ensembl chr18:73,639,009...73,703,780
JBrowse link
G Smarcc1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 disease_progression ISO RGD PMID:33532313 RGD:127285652 NCBI chr 9:110,132,024...110,240,178
Ensembl chr 9:110,117,708...110,240,178
JBrowse link
G Sod2 superoxide dismutase 2, mitochondrial ISO CTD Direct Evidence: marker/mechanism CTD PMID:15108329 NCBI chr17:13,007,839...13,018,119
Ensembl chr17:13,006,846...13,040,063
JBrowse link
G Sparc secreted acidic cysteine rich glycoprotein ISO mRNA, protein:increased expression:kidney RGD PMID:11679940 RGD:2300025 NCBI chr11:55,394,159...55,420,080
Ensembl chr11:55,394,500...55,423,183
JBrowse link
G Spink1 serine peptidase inhibitor, Kazal type 1 disease_progression ISO protein:decreased expression:kidney
protein:increased expression:serum
RGD PMID:10508484 PMID:11176522 RGD:2300388, RGD:2300387 NCBI chr18:43,728,069...43,737,237
Ensembl chr18:43,728,082...43,737,557
JBrowse link
G Sptbn4 spectrin beta, non-erythrocytic 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22138691 NCBI chr 7:27,356,383...27,447,704
Ensembl chr 7:27,356,383...27,447,686
JBrowse link
G St14 suppression of tumorigenicity 14 (colon carcinoma) ISO protein:increased expression:kidney RGD PMID:16501837 RGD:2315090 NCBI chr 9:31,088,590...31,131,811
Ensembl chr 9:31,089,402...31,131,853
JBrowse link
G St7 suppression of tumorigenicity 7 ISO ClinVar Annotator: match by term: Renal cell carcinoma ClinVar PMID:28492532 NCBI chr 6:17,693,901...17,943,023
Ensembl chr 6:17,692,933...17,943,025
JBrowse link
G Stat3 signal transducer and activator of transcription 3 disease_progression ISO DNA:snp
protein:increased phosphorylation:kidney
RGD PMID:17602083 PMID:12131365 RGD:2291913, RGD:2291917 NCBI chr11:100,886,806...100,939,594
Ensembl chr11:100,885,098...100,939,540
JBrowse link
G Syne2 spectrin repeat containing, nuclear envelope 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22138691 NCBI chr12:75,818,318...76,110,928
Ensembl chr12:75,818,134...76,110,926
JBrowse link
G Tagln2 transgelin 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15108329 NCBI chr 1:172,500,246...172,507,375
Ensembl chr 1:172,500,047...172,507,380
JBrowse link
G Terc telomerase RNA component ISO RNA:decreased expression:kidney RGD PMID:11156238 RGD:2291972 NCBI chr 3:96,414,437...96,414,833
Ensembl chr 3:96,414,437...96,414,859
Ensembl chr 3:96,414,437...96,414,859
JBrowse link
G Tert telomerase reverse transcriptase ISO mRNA, protein:increased expression:kidney RGD PMID:18250061 RGD:2291980 NCBI chr13:73,626,911...73,649,843
Ensembl chr13:73,626,911...73,649,843
JBrowse link
G Tet2 tet methylcytosine dioxygenase 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23797736 NCBI chr 3:133,463,677...133,545,136
Ensembl chr 3:133,463,679...133,545,139
JBrowse link
G Tfe3 transcription factor E3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:12917640 RGD:1599384 NCBI chr  X:7,762,530...7,775,202
Ensembl chr  X:7,762,560...7,775,202
JBrowse link
G Tfrc transferrin receptor ISO mRNA:decreased expression:kidney, T cell
protein:increased expression:kidney, T cell
RGD PMID:8050820 PMID:12394762 RGD:2292025, RGD:2292024 NCBI chr16:32,608,896...32,632,794
Ensembl chr16:32,608,920...32,632,794
JBrowse link
G Tgfb1 transforming growth factor, beta 1 disease_progression ISO protein:increased expression:peripheral blood RGD PMID:26749573 PMID:25499257 PMID:26631499 RGD:11560966, RGD:13506175, RGD:13506173 NCBI chr 7:25,687,002...25,705,077
Ensembl chr 7:25,687,002...25,705,077
JBrowse link
G Tgm2 transglutaminase 2, C polypeptide ISO CTD Direct Evidence: marker/mechanism CTD PMID:15108329 NCBI chr 2:158,116,405...158,146,392
Ensembl chr 2:158,116,402...158,146,436
JBrowse link
G Thra thyroid hormone receptor alpha ISO DNA:mutations (human) RGD PMID:11756220 RGD:2315097 NCBI chr11:98,740,776...98,769,006
Ensembl chr11:98,740,638...98,769,006
JBrowse link
G Thrb thyroid hormone receptor beta ISO DNA:mutations (human) RGD PMID:11756220 RGD:2315097 NCBI chr14:17,659,225...18,040,097
Ensembl chr14:17,660,261...18,038,090
JBrowse link
G Timp1 tissue inhibitor of metalloproteinase 1 disease_progression ISO protein:increased expression:kidney RGD PMID:11595703 RGD:2290350 NCBI chr  X:20,870,166...20,874,737
Ensembl chr  X:20,870,166...20,874,735
JBrowse link
G Timp2 tissue inhibitor of metalloproteinase 2 disease_progression ISO protein:increased expression:kidney
mRNA:decreased expression:kidney
RGD PMID:17572184 PMID:18035688 RGD:2290359, RGD:2290358 NCBI chr11:118,301,061...118,355,411
Ensembl chr11:118,301,069...118,355,740
JBrowse link
G Timp3 tissue inhibitor of metalloproteinase 3 ISO mRNA:decreased expression:kidney RGD PMID:11576837 RGD:2290421 NCBI chr10:86,300,412...86,349,505
Ensembl chr10:86,300,372...86,349,506
JBrowse link
G Timp4 tissue inhibitor of metalloproteinase 4 ISO mRNA:decreased expression:kidney RGD PMID:11576837 RGD:2290421 NCBI chr 6:115,244,444...115,252,205
Ensembl chr 6:115,241,892...115,252,205
JBrowse link
G Tlr9 toll-like receptor 9 severity ISO protein:decreased expression:tumor, cytoplasm (human) RGD PMID:21929816 RGD:7246915 NCBI chr 9:106,222,598...106,226,876
Ensembl chr 9:106,222,598...106,226,883
JBrowse link
G Tnf tumor necrosis factor ISO RGD PMID:19384924 PMID:19904265 RGD:2315119, RGD:2315113 NCBI chr17:35,199,367...35,202,007
Ensembl chr17:35,199,381...35,202,007
JBrowse link
G Tnfrsf10b tumor necrosis factor receptor superfamily, member 10b ISO mRNA:increased expression:kidney RGD PMID:16865223 PMID:17184908 RGD:2290496, RGD:2290491 NCBI chr14:69,767,472...69,784,411
Ensembl chr14:69,767,472...69,784,411
JBrowse link
G Tnfrsf1a tumor necrosis factor receptor superfamily, member 1a ISO protein:increased expression:serum (human) RGD PMID:7912320 RGD:5131437 NCBI chr 6:125,349,723...125,362,483
Ensembl chr 6:125,349,362...125,362,484
JBrowse link
G Tnfrsf1b tumor necrosis factor receptor superfamily, member 1b ISO RGD PMID:20566746 RGD:7245512 NCBI chr 4:145,212,368...145,246,870
Ensembl chr 4:145,213,463...145,246,870
JBrowse link
G Tnfsf10 tumor necrosis factor (ligand) superfamily, member 10 ISO CTD Direct Evidence: therapeutic CTD PMID:20403343 NCBI chr 3:27,317,077...27,339,665
Ensembl chr 3:27,317,028...27,342,427
JBrowse link
G Trp53 transformation related protein 53 disease_progression ISO ClinVar Annotator: match by term: Renal adenocarcinoma
ClinVar Annotator: match by term: Renal cell carcinoma
ClinVar Annotator: match by term: Renal cell cancer
ClinVar Annotator: match by term: Hypernephroma
ClinVar Annotator: match by term: Renal cell carcinoma, papillary, 1
ClinVar Annotator: match by term: Renal cell carcinoma, somatic
CTD Direct Evidence: marker/mechanism
ClinVar
CTD
PMID:1349175 PMID:1565143 PMID:1565144 PMID:1644930 PMID:1737852 More... RGD:2290544 NCBI chr11:69,580,348...69,591,873
Ensembl chr11:69,580,359...69,591,873
JBrowse link
G Trp73 transformation related protein 73 ISO RGD PMID:9796703 RGD:2291837 NCBI chr 4:154,056,249...154,139,875
Ensembl chr 4:154,056,253...154,140,208
Ensembl chr 4:154,056,253...154,140,208
JBrowse link
G Tsc1 TSC complex subunit 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22138691 NCBI chr 2:28,640,993...28,691,172
Ensembl chr 2:28,641,228...28,691,167
JBrowse link
G Tsc2 TSC complex subunit 2 treatment IMP
ISO
DNA:nonsense mutations;missense mutations; splice-site mutation:multiple RGD PMID:10096549 PMID:10029074 PMID:18695678 RGD:11568655, RGD:68666, RGD:11568661 NCBI chr17:24,595,816...24,632,676
Ensembl chr17:24,595,816...24,632,630
JBrowse link
G Txnip thioredoxin interacting protein ISO DNA, mRNA, protein:hypermethylation, decreased expression:promoter, kidney RGD PMID:15834431 RGD:1642756 NCBI chr 3:96,557,957...96,561,857
Ensembl chr 3:96,557,957...96,561,883
JBrowse link
G Tymp thymidine phosphorylase severity ISO protein:increased expression:kidney RGD PMID:12614261 PMID:16861722 RGD:2293723, RGD:2293717 NCBI chr15:89,371,631...89,377,036
Ensembl chr15:89,371,931...89,377,039
JBrowse link
G Unc5c unc-5 netrin receptor C ISO CTD Direct Evidence: marker/mechanism CTD PMID:21600761 NCBI chr 3:141,465,564...141,834,924
Ensembl chr 3:141,465,216...141,834,924
JBrowse link
G Vdr vitamin D (1,25-dihydroxyvitamin D3) receptor ISO GAD PMID:15118671 RGD:1331525 NCBI chr15:97,854,427...97,908,296
Ensembl chr15:97,854,425...97,910,630
JBrowse link
G Vegfa vascular endothelial growth factor A disease_progression ISO RGD PMID:19755989 RGD:2315455 NCBI chr17:46,016,993...46,032,377
Ensembl chr17:46,016,993...46,032,369
JBrowse link
G Vegfc vascular endothelial growth factor C ISO RGD PMID:19500329 RGD:2315476 NCBI chr 8:54,077,532...54,186,454
Ensembl chr 8:54,077,606...54,187,096
JBrowse link
G Vhl von Hippel-Lindau tumor suppressor ISO ClinVar Annotator: match by term: Renal cell carcinoma with paraneoplastic erythrocytosis
CTD Direct Evidence: marker/mechanism
ClinVar
CTD
OMIM
PMID:9137812 PMID:10340905 PMID:11171960 PMID:11986208 PMID:15177666 More... RGD:1580369 NCBI chr 6:113,623,994...113,631,634
Ensembl chr 6:113,623,959...113,631,633
JBrowse link
G Vmo1 vitelline membrane outer layer 1 homolog (chicken) ISO CTD Direct Evidence: marker/mechanism CTD PMID:23797736 NCBI chr11:70,513,516...70,514,616
Ensembl chr11:70,513,516...70,514,616
JBrowse link
G Vwf Von Willebrand factor disease_progression ISO protein:increased expression:plasma RGD PMID:21953673 RGD:7207032 NCBI chr 6:125,552,948...125,686,679
Ensembl chr 6:125,546,774...125,686,679
JBrowse link
G Wif1 Wnt inhibitory factor 1 ISO DNA:hypermethylation:promoter RGD PMID:17145819 RGD:2291869 NCBI chr10:121,034,004...121,100,642
Ensembl chr10:121,033,960...121,100,650
JBrowse link
G Wnt11 wingless-type MMTV integration site family, member 11 ISO RGD PMID:11712081 RGD:2299947 NCBI chr 7:98,835,084...98,854,747
Ensembl chr 7:98,835,112...98,855,195
JBrowse link
G Wnt2 wingless-type MMTV integration site family, member 2 ISO ClinVar Annotator: match by term: Renal cell carcinoma ClinVar PMID:28492532 NCBI chr 6:17,985,474...18,032,772
Ensembl chr 6:17,988,940...18,030,585
JBrowse link
G Xiap X-linked inhibitor of apoptosis disease_progression ISO protein:increased expression:kidney RGD PMID:17332931 RGD:2315854 NCBI chr  X:42,059,613...42,109,664
Ensembl chr  X:42,059,679...42,109,656
JBrowse link
G Xrcc1 X-ray repair complementing defective repair in Chinese hamster cells 1 susceptibility ISO DNA:SNP: :p.R399Q RGD PMID:16510122 RGD:2302577 NCBI chr 7:24,546,699...24,573,438
Ensembl chr 7:24,546,289...24,573,440
JBrowse link
G Yipf3 Yip1 domain family, member 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23797736 NCBI chr17:46,248,080...46,252,537
Ensembl chr17:46,248,080...46,252,537
JBrowse link
G Zfp536 zinc finger protein 536 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23797736 NCBI chr 7:37,318,023...37,774,039
Ensembl chr 7:37,318,024...37,773,641
JBrowse link
G Zfp804a zinc finger protein 804A ISO CTD Direct Evidence: marker/mechanism CTD PMID:22138691 NCBI chr 2:82,050,129...82,259,879
Ensembl chr 2:82,053,222...82,259,879
JBrowse link
Renal Cell Carcinoma 1 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mtor mechanistic target of rapamycin kinase ISO ClinVar Annotator: match by term: Renal cell carcinoma 1 ClinVar PMID:24631838 PMID:26018084 PMID:26619011 PMID:27159400 PMID:27830187 NCBI chr 4:148,448,582...148,557,685
Ensembl chr 4:148,448,611...148,557,683
JBrowse link
G Nras neuroblastoma ras oncogene ISO ClinVar Annotator: match by term: Renal cell carcinoma 1 ClinVar PMID:1654209 PMID:2278970 PMID:2674680 PMID:3122217 PMID:6587382 More... NCBI chr 3:103,058,285...103,067,914
Ensembl chr 3:103,058,285...103,067,914
JBrowse link
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha ISO ClinVar Annotator: match by term: Renal cell carcinoma 1 ClinVar PMID:15016963 PMID:15254419 PMID:15520168 PMID:15608678 PMID:15647370 More... NCBI chr 3:32,397,065...32,466,112
Ensembl chr 3:32,397,671...32,468,486
JBrowse link
G Pten phosphatase and tensin homolog ISO ClinVar Annotator: match by term: Renal cell carcinoma 1 ClinVar PMID:9467011 PMID:9915974 PMID:10866302 PMID:11504908 PMID:11875759 More... NCBI chr19:32,757,577...32,826,160
Ensembl chr19:32,757,497...32,826,160
JBrowse link
G Trp53 transformation related protein 53 ISO ClinVar Annotator: match by term: Renal cell carcinoma 1 ClinVar PMID:1349175 PMID:1565143 PMID:1565144 PMID:1644930 PMID:1737852 More... NCBI chr11:69,580,348...69,591,873
Ensembl chr11:69,580,359...69,591,873
JBrowse link
Renal Cell Carcinoma, Xp11-Associated term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tfe3 transcription factor E3 ISO OMIM NCBI chr  X:7,762,530...7,775,202
Ensembl chr  X:7,762,560...7,775,202
JBrowse link
Sporadic Papillary Renal Cell Carcinoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Araf Araf proto-oncogene, serine/threonine kinase ISO ClinVar Annotator: match by term: Papillary renal cell carcinoma, sporadic ClinVar PMID:24569458 PMID:26619011 NCBI chr  X:20,797,707...20,860,521
Ensembl chr  X:20,797,814...20,860,519
JBrowse link
G Braf Braf transforming gene ISO ClinVar Annotator: match by term: Papillary renal cell carcinoma, sporadic ClinVar PMID:12068308 PMID:12198537 PMID:12447372 PMID:12460918 PMID:12460919 More... NCBI chr 6:39,603,231...39,725,658
Ensembl chr 6:39,603,237...39,725,463
JBrowse link
G Cdkn2a cyclin dependent kinase inhibitor 2A ISO ClinVar Annotator: match by term: Papillary renal cell carcinoma, sporadic ClinVar PMID:25741868 PMID:26619011 PMID:28492532 NCBI chr 4:89,274,473...89,294,619
Ensembl chr 4:89,274,471...89,294,653
JBrowse link
G Erbb2 erb-b2 receptor tyrosine kinase 2 ISO ClinVar Annotator: match by term: Papillary renal cell carcinoma, sporadic ClinVar PMID:18413839 PMID:22046346 PMID:23220880 PMID:25157968 PMID:26619011 NCBI chr11:98,412,484...98,437,716
Ensembl chr11:98,412,470...98,437,716
JBrowse link
G Fbxw7 F-box and WD-40 domain protein 7 ISO ClinVar Annotator: match by term: Papillary renal cell carcinoma, sporadic ClinVar PMID:26619011 NCBI chr 3:84,814,990...84,979,198
Ensembl chr 3:84,815,268...84,979,198
JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 ISO ClinVar Annotator: match by term: Papillary renal cell carcinoma, sporadic ClinVar PMID:8589699 PMID:8845844 PMID:9438390 PMID:9843049 PMID:10471491 More... NCBI chr 5:33,721,724...33,737,068
Ensembl chr 5:33,721,674...33,737,068
JBrowse link
G Hras Harvey rat sarcoma virus oncogene ISO ClinVar Annotator: match by term: Papillary renal cell carcinoma, sporadic ClinVar PMID:11150980 PMID:16155195 PMID:16170316 PMID:16329078 PMID:16372351 More... NCBI chr 7:141,189,934...141,194,019
Ensembl chr 7:141,189,105...141,194,005
JBrowse link
G Lrrc56 leucine rich repeat containing 56 ISO ClinVar Annotator: match by term: Papillary renal cell carcinoma, sporadic ClinVar PMID:11150980 PMID:16155195 PMID:16170316 PMID:16329078 PMID:16372351 More... NCBI chr 7:141,194,111...141,210,055
Ensembl chr 7:141,194,157...141,210,055
JBrowse link
G Mtor mechanistic target of rapamycin kinase ISO ClinVar Annotator: match by term: Papillary renal cell carcinoma, sporadic ClinVar PMID:24631838 PMID:26018084 PMID:26619011 PMID:27159400 PMID:27830187 NCBI chr 4:148,448,582...148,557,685
Ensembl chr 4:148,448,611...148,557,683
JBrowse link
G Myc myelocytomatosis oncogene severity ISO mRNA:increased expression:renal cortex (human)
protein:increased expression:kidney (human)
RGD PMID:19384955 PMID:17409424 RGD:7240562, RGD:7240563 NCBI chr15:61,985,341...61,990,361
Ensembl chr15:61,985,391...61,990,374
JBrowse link
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha ISO ClinVar Annotator: match by term: Papillary renal cell carcinoma, sporadic ClinVar PMID:15016963 PMID:15254419 PMID:15520168 PMID:15608678 PMID:15647370 More... NCBI chr 3:32,397,065...32,466,112
Ensembl chr 3:32,397,671...32,468,486
JBrowse link
G Rheb Ras homolog enriched in brain ISO ClinVar Annotator: match by term: Papillary renal cell carcinoma, sporadic ClinVar PMID:26619011 NCBI chr 5:24,802,823...24,842,361
Ensembl chr 5:24,802,823...24,842,624
JBrowse link
G Trp53 transformation related protein 53 ISO ClinVar Annotator: match by term: Papillary renal cell carcinoma, sporadic ClinVar PMID:1565143 PMID:7887414 PMID:8023157 PMID:8118819 PMID:8242631 More... NCBI chr11:69,580,348...69,591,873
Ensembl chr11:69,580,359...69,591,873
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  disease 14517
    disease of cellular proliferation 6892
      Neoplasms by Histologic Type 4749
        cell type cancer 3409
          carcinoma 2925
            renal carcinoma 347
              kidney carcinoma in situ 0
              renal cell carcinoma + 341
              renal pelvis carcinoma + 0
Path 2
Term Annotations click to browse term
  disease 14517
    disease of anatomical entity 14115
      Urogenital Diseases 4031
        urinary system disease 1831
          kidney disease 1613
            Kidney Neoplasms 433
              kidney cancer 407
                renal carcinoma 347
                  kidney carcinoma in situ 0
                  renal cell carcinoma + 341
                  renal pelvis carcinoma + 0
paths to the root