RGD DISEASE ONTOLOGY - ANNOTATIONS
RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.
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Ache
acetylcholinesterase (Cartwright blood group)
ISO
RGD
PMID:17986328
RGD:5509842
NCBI chrNW_004955573:79,606...85,799
Ensembl chrNW_004955573:80,298...85,799
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Adrb2
adrenoceptor beta 2
ISO
DNA:polymorphisms:cds:p.R16G,Q27E(human)
RGD
PMID:10606977
RGD:8548470
NCBI chrNW_004955415:5,515,157...5,517,198
Ensembl chrNW_004955415:5,515,697...5,516,980
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Cfb
complement factor B
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:6605118
NCBI chrNW_004955437:461,235...466,908
Ensembl chrNW_004955437:461,235...470,464
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Chrm1
cholinergic receptor muscarinic 1
ISO
RGD
PMID:17764462
RGD:5133415
NCBI chrNW_004955599:349,744...356,714
Ensembl chrNW_004955599:349,744...356,714
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Cxcl10
C-X-C motif chemokine ligand 10
ISO
RGD
PMID:15843529
RGD:1598501
NCBI chrNW_004955433:748,392...750,890
Ensembl chrNW_004955433:748,284...750,927
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Cxcr3
C-X-C motif chemokine receptor 3
ISO
RGD
PMID:15843529
RGD:1598501
NCBI chrNW_004955475:11,148,928...11,152,313
Ensembl chrNW_004955475:11,148,879...11,152,596
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Esr2
estrogen receptor 2
ISO
RGD
PMID:15661863
RGD:5509039
NCBI chrNW_004955466:5,587,003...5,644,765
Ensembl chrNW_004955466:5,575,088...5,638,946
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Fas
Fas cell surface death receptor
ISO
CTD Direct Evidence: marker/mechanism protein:increased expression:peripheral blood, T lymphocyte (human)
CTD RGD
PMID:15169653 PMID:23043710
RGD:8662430
NCBI chrNW_004955425:3,961,671...3,987,513
Ensembl chrNW_004955425:3,961,013...3,987,455
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Il2rb
interleukin 2 receptor subunit beta
ISO
DNA:SNP, haplotype:intron:c.-33-11362T>C (rs743777) (human)
RGD
PMID:20728947
RGD:5684377
NCBI chrNW_004955413:23,623,567...23,640,245
Ensembl chrNW_004955413:23,623,154...23,640,259
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LOC102026469
HLA class II histocompatibility antigen, DP beta 1 chain
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:17956852
NCBI chrNW_004955437:1,655,092...1,666,552
Ensembl chrNW_004955437:1,635,538...1,669,042
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Musk
muscle associated receptor tyrosine kinase
severity treatment
ISO
CTD Direct Evidence: marker/mechanism protein:increased expression:serum (human)
CTD RGD
PMID:22218276 PMID:22981737 PMID:26025053 PMID:27119269
RGD:38599165 RGD:38599166
NCBI chrNW_004955419:16,387,770...16,484,266
Ensembl chrNW_004955419:16,387,770...16,484,266
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Pomc
proopiomelanocortin
ISO
CTD Direct Evidence: therapeutic
CTD
PMID:4323972
NCBI chrNW_004955469:7,217,233...7,220,401
Ensembl chrNW_004955469:7,217,363...7,220,386
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Ptpn22
protein tyrosine phosphatase non-receptor type 22
ISO
DNA: snp: cds: 1858T
RGD
PMID:19693092
RGD:6484722
NCBI chrNW_004955435:17,082,762...17,139,067
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Zscan25
zinc finger and SCAN domain containing 25
ISO
ClinVar Annotator: match by term: refractory myasthenia gravis
ClinVar
PMID:11279519 PMID:11740341 PMID:12065767 PMID:12754175 PMID:15492926
NCBI chrNW_004955460:15,271,577...15,280,712
Ensembl chrNW_004955460:15,271,122...15,282,042
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Chat
choline O-acetyltransferase
susceptibility
ISO
ClinVar Annotator: match by term: Familial infantile myasthenia DNA:frameshift mutation, missense mutations
OMIM ClinVar RGD
PMID:9073174 PMID:9536098 PMID:11172068 PMID:12548525 PMID:12609506 PMID:12756141 PMID:15381704 PMID:15701560 PMID:16199547 PMID:17576681 PMID:18414213 PMID:19520274 PMID:19900826 PMID:21786365 PMID:21948486 PMID:22678886 PMID:23292760 PMID:24033266 PMID:25741868 PMID:26080897 PMID:26467025 PMID:26789281 PMID:28492532 PMID:28497657 PMID:28991257 PMID:29054425 PMID:29189923 PMID:32368696 PMID:33820833 PMID:34431804 PMID:34740919 PMID:36308527 More...
RGD:1600831
NCBI chrNW_004955556:650,290...695,135
Ensembl chrNW_004955556:650,279...693,276
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Slc18a3
solute carrier family 18 member A3
ISO
ClinVar Annotator: match by term: Familial infantile myasthenia
ClinVar
PMID:21948486 PMID:25741868 PMID:28492532
NCBI chrNW_004955556:696,779...698,869
Ensembl chrNW_004955556:696,974...698,566
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Vhl
von Hippel-Lindau tumor suppressor
ISO
ClinVar Annotator: match by term: MYASTHENIC SYNDROME, CONGENITAL, 6, PRESYNAPTIC
ClinVar
PMID:7728151 PMID:7784063 PMID:7987306 PMID:7987327 PMID:8522307 PMID:8730290 PMID:8956040 PMID:9452032 PMID:9829911 PMID:9829912 PMID:10567493 PMID:12000816 PMID:12114495 PMID:14722919 PMID:14767570 PMID:15300849 PMID:18446368 PMID:19270817 PMID:20120764 PMID:21362373 PMID:23842656 PMID:24206762 PMID:24301059 PMID:24707167 PMID:25157968 PMID:25720320 PMID:25741868 PMID:25867206 PMID:27527340 PMID:27617348 PMID:28492532 More...
NCBI chrNW_004955561:1,573,525...1,578,295
Ensembl chrNW_004955561:1,573,525...1,580,511
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Arpc5
actin related protein 2/3 complex subunit 5
treatment
ISO
RGD
PMID:17997938
RGD:11049469
NCBI chrNW_004955406:22,409,239...22,418,950
Ensembl chrNW_004955406:22,409,239...22,418,945
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C3
complement C3
ISO
RGD
PMID:147324 PMID:17962462
RGD:11040804 RGD:7401263
NCBI chrNW_004955495:2,796,601...2,824,233
Ensembl chrNW_004955495:2,796,663...2,824,697
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Cd40lg
CD40 ligand
treatment
ISO
RGD
PMID:11359850
RGD:8547800
NCBI chrNW_004955489:8,465,571...8,477,714
Ensembl chrNW_004955489:8,465,164...8,477,746
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Cfb
complement factor B
treatment
ISO
RGD
PMID:25355917
RGD:11041161
NCBI chrNW_004955437:461,235...466,908
Ensembl chrNW_004955437:461,235...470,464
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Chrna1
cholinergic receptor nicotinic alpha 1 subunit
treatment
ISO
RGD
PMID:10606626
RGD:704386
NCBI chrNW_004955449:661,310...683,873
Ensembl chrNW_004955449:661,304...683,873
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Cxcl10
C-X-C motif chemokine ligand 10
ISO
RGD
PMID:15843529 PMID:19232748
RGD:1598501 RGD:2311364
NCBI chrNW_004955433:748,392...750,890
Ensembl chrNW_004955433:748,284...750,927
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Cxcl9
C-X-C motif chemokine ligand 9
ISO
RGD
PMID:15843529
RGD:1598501
NCBI chrNW_004955433:724,566...731,945
Ensembl chrNW_004955433:724,515...732,192
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Cxcr3
C-X-C motif chemokine receptor 3
ISO
RGD
PMID:15843529 PMID:19232748
RGD:1598501 RGD:2311364
NCBI chrNW_004955475:11,148,928...11,152,313
Ensembl chrNW_004955475:11,148,879...11,152,596
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Il15
interleukin 15
ISO
protein:increased expression:skeletal muscle
RGD
PMID:11585642
RGD:1626617
NCBI chrNW_004955471:1,496,352...1,583,919
Ensembl chrNW_004955471:1,497,483...1,511,469
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Il23r
interleukin 23 receptor
ISO
mRNA:increased expression:lymph node
RGD
PMID:21193288
RGD:5108250
NCBI chrNW_004955423:23,841,342...23,885,191
Ensembl chrNW_004955423:23,842,475...23,884,904
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Il2ra
interleukin 2 receptor subunit alpha
ISO
RGD
PMID:18250419
RGD:2325986
NCBI chrNW_004955421:22,642,004...22,694,729
Ensembl chrNW_004955421:22,641,511...22,694,913
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Il4r
interleukin 4 receptor
ISO
protein:increased expression:skeletal muscle
RGD
PMID:19395316
RGD:4889981
NCBI chrNW_004955493:5,546,340...5,580,745
Ensembl chrNW_004955493:5,545,944...5,582,422
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Musk
muscle associated receptor tyrosine kinase
ISO
RGD
PMID:17081697
RGD:2317084
NCBI chrNW_004955419:16,387,770...16,484,266
Ensembl chrNW_004955419:16,387,770...16,484,266
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Myog
myogenin
ISO
RGD
PMID:1312030
RGD:9686077
NCBI chrNW_004955406:39,099,044...39,102,479
Ensembl chrNW_004955406:39,099,716...39,102,501
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Rapsn
receptor associated protein of the synapse
ISO
protein:decreased expression:neuromuscular junction
RGD
PMID:19344765
RGD:8549750
NCBI chrNW_004955422:826,556...834,483
Ensembl chrNW_004955422:826,727...834,289
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