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ONTOLOGY REPORT - ANNOTATIONS
Term:bile duct disease
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Accession:DOID:4138 term browser browse the term
Definition:Diseases in any part of the ductal system of the BILIARY TRACT from the smallest BILE CANALICULI to the largest COMMON BILE DUCT.
Synonyms:exact_synonym: bile duct diseases;   bile duct disorder;   disorder of bile duct
 primary_id: MESH:D001649;   RDO:0004991
 xref: NCI:C96716
For additional species annotation, visit the Alliance of Genome Resources.

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bile duct disease term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G F3 coagulation factor III, tissue factor JBrowse link 2 225,310,686 225,322,281 RGD:11341737
G Fech ferrochelatase JBrowse link 18 59,941,992 59,975,192 RGD:11554173
G Magee1 MAGE family member E1 JBrowse link X 76,083,553 76,087,100 RGD:11554173
Alagille syndrome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Jag1 jagged canonical Notch ligand 1 JBrowse link 3 130,079,361 130,114,781 RGD:1580651
RGD:8554872
RGD:11554173
RGD:7240710
RGD:6482237
RGD:6482232
G Mkks McKusick-Kaufman syndrome JBrowse link 3 129,866,542 129,885,213 RGD:8554872
G Notch2 notch receptor 2 JBrowse link 2 200,187,184 200,320,403 RGD:1580762
RGD:8554872
RGD:7240710
G Slx4ip SLX4 interacting protein JBrowse link 3 129,884,871 130,069,371 RGD:8554872
G Snap25 synaptosome associated protein 25 JBrowse link 3 129,697,408 129,788,417 RGD:8554872
ARC syndrome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Vipas39 VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog JBrowse link 6 111,271,283 111,296,013 RGD:11554173
RGD:8554872
G Vps33b VPS33B, late endosome and lysosome associated JBrowse link 1 142,060,955 142,083,955 RGD:8554872
RGD:11554173
arthrogryposis, renal dysfunction, and cholestasis 1 term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Vps33b VPS33B, late endosome and lysosome associated JBrowse link 1 142,060,955 142,083,955 RGD:7240710
arthrogryposis, renal dysfunction, and cholestasis 2 term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Vipas39 VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog JBrowse link 6 111,271,283 111,296,013 RGD:8554872
RGD:7240710
benign recurrent intrahepatic cholestasis 1 term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atp8b1 ATPase phospholipid transporting 8B1 JBrowse link 18 60,013,388 60,152,920 RGD:8554872
RGD:14401576
RGD:7240710
benign recurrent intrahepatic cholestasis 2 term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abcb11 ATP binding cassette subfamily B member 11 JBrowse link 3 55,480,024 55,587,946 RGD:7240710
RGD:8554872
bile duct cancer term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Apob apolipoprotein B JBrowse link 6 33,176,826 33,216,381 RGD:2317550
G Apoe apolipoprotein E JBrowse link 1 80,612,894 80,616,820 RGD:2317550
G Tjp1 tight junction protein 1 JBrowse link 1 126,146,489 126,515,359 RGD:2325030
bile duct carcinoma term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Msln mesothelin JBrowse link 10 15,119,700 15,129,129 RGD:2326059
Bile Duct Neoplasms term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Asph aspartate-beta-hydroxylase JBrowse link 5 22,577,680 22,799,333 RGD:2325824
G Egfr epidermal growth factor receptor JBrowse link 14 99,919,485 100,104,136 RGD:11554173
G Fscn1 fascin actin-bundling protein 1 JBrowse link 12 13,655,459 13,668,595 RGD:2317786
G Il6 interleukin 6 JBrowse link 4 3,043,231 3,047,807 RGD:2317166
G Met MET proto-oncogene, receptor tyrosine kinase JBrowse link 4 44,747,467 44,854,628 RGD:2317585
G Mgmt O-6-methylguanine-DNA methyltransferase JBrowse link 1 209,237,255 209,464,189 RGD:2317662
G Mki67 marker of proliferation Ki-67 JBrowse link 1 207,993,895 208,020,454 RGD:2317706
G Muc16 mucin 16, cell surface associated JBrowse link 8 18,438,838 18,639,777 RGD:2325134
G Muc4 mucin 4, cell surface associated JBrowse link 11 71,242,973 71,285,217 RGD:2324929
G Ncam1 neural cell adhesion molecule 1 JBrowse link 8 53,836,797 54,134,881 RGD:2326077
RGD:2326076
G Runx3 RUNX family transcription factor 3 JBrowse link 5 153,507,093 153,531,137 RGD:2324957
biliary atresia term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adipoq adiponectin, C1Q and collagen domain containing JBrowse link 11 81,330,845 81,344,488 RGD:5686894
G Cd14 CD14 molecule JBrowse link 18 29,560,341 29,562,290 RGD:7184431
G Dlk1 delta like non-canonical Notch ligand 1 JBrowse link 6 133,576,513 133,583,751 RGD:1625622
G Ggt1 gamma-glutamyltransferase 1 JBrowse link 20 14,019,723 14,045,781 RGD:14701039
G Gli2 GLI family zinc finger 2 JBrowse link 13 34,829,021 35,049,172 RGD:12802349
G Hamp hepcidin antimicrobial peptide JBrowse link 1 89,368,021 89,369,960 RGD:11554173
G Icam1 intercellular adhesion molecule 1 JBrowse link 8 22,035,287 22,047,049 RGD:14402043
G Il18 interleukin 18 JBrowse link 8 55,009,666 55,016,286 RGD:14695528
RGD:14695529
G Pten phosphatase and tensin homolog JBrowse link 1 251,421,814 251,487,634 RGD:12832754
G Shh sonic hedgehog signaling molecule JBrowse link 4 718,538 727,691 RGD:12802349
G Sox17 SRY-box transcription factor 17 JBrowse link 5 14,890,318 14,895,907 RGD:13592920
G Spint1 serine peptidase inhibitor, Kunitz type 1 JBrowse link 3 111,049,132 111,061,991 RGD:10043111
G Spint2 serine peptidase inhibitor, Kunitz type, 2 JBrowse link 1 87,199,373 87,221,826 RGD:10043111
G Spp1 secreted phosphoprotein 1 JBrowse link 14 6,673,686 6,679,965 RGD:1581370
G Tgfb1 transforming growth factor, beta 1 JBrowse link 1 82,480,875 82,497,196 RGD:14985228
Caroli disease term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Angpt2 angiopoietin 2 JBrowse link 16 75,966,480 76,016,147 RGD:2314213
G Wdr19 WD repeat domain 19 JBrowse link 14 44,705,012 44,767,120 RGD:11528287
cholangiocarcinoma term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abcc2 ATP binding cassette subfamily C member 2 JBrowse link 1 263,554,426 263,612,556 RGD:2317508
G Adrb2 adrenoceptor beta 2 JBrowse link 18 57,513,792 57,515,834 RGD:2325640
G Alb albumin JBrowse link 14 19,176,275 19,191,793 RGD:2325682
RGD:2325679
RGD:2325680
G Alox5 arachidonate 5-lipoxygenase JBrowse link 4 148,398,004 148,446,308 RGD:2317521
G Anxa2 annexin A2 JBrowse link 8 75,687,134 75,723,589 RGD:2325728
G Apc APC regulator of WNT signaling pathway JBrowse link 18 27,011,710 27,106,323 RGD:2317198
RGD:2317205
G Apoa1 apolipoprotein A1 JBrowse link 8 50,525,091 50,526,875 RGD:2325756
G Arid1a AT-rich interaction domain 1A JBrowse link 5 151,904,687 151,977,973 RGD:11554173
G Asph aspartate-beta-hydroxylase JBrowse link 5 22,577,680 22,799,333 RGD:6902945
G Bap1 Brca1 associated protein 1 JBrowse link 16 7,336,685 7,345,511 RGD:11554173
G Cdkn2a cyclin-dependent kinase inhibitor 2A JBrowse link 5 107,823,323 107,832,405 RGD:2317417
G Cycs cytochrome c, somatic JBrowse link 4 80,331,226 80,333,326 RGD:2317615
G Egfr epidermal growth factor receptor JBrowse link 14 99,919,485 100,104,136 RGD:11554173
G Epo erythropoietin JBrowse link 12 22,274,828 22,278,268 RGD:10400912
G Epor erythropoietin receptor JBrowse link 8 22,969,737 22,974,468 RGD:10400912
G Erbb2 erb-b2 receptor tyrosine kinase 2 JBrowse link 10 86,367,596 86,391,728 RGD:11554173
G Faslg Fas ligand JBrowse link 13 79,696,811 79,717,581 RGD:2317746
G Fgf2 fibroblast growth factor 2 JBrowse link 2 124,081,072 124,134,133 RGD:2317765
G Fgfr2 fibroblast growth factor receptor 2 JBrowse link 1 200,590,951 200,696,946 RGD:11554173
G Fscn1 fascin actin-bundling protein 1 JBrowse link 12 13,655,459 13,668,595 RGD:2317780
G Gnas GNAS complex locus JBrowse link 3 172,374,957 172,434,988 RGD:1601377
RGD:11554173
G Gstm1 glutathione S-transferase mu 1 JBrowse link 2 210,803,869 210,809,461 RGD:14700980
G Gstp1 glutathione S-transferase pi 1 JBrowse link 1 219,291,679 219,294,147 RGD:2317198
RGD:14401711
G Hdac6 histone deacetylase 6 JBrowse link X 15,295,372 15,316,673 RGD:9681560
G Hgf hepatocyte growth factor JBrowse link 4 15,435,460 15,505,377 RGD:2317925
RGD:2317909
G Idh1 isocitrate dehydrogenase (NADP(+)) 1 JBrowse link 9 71,882,108 71,911,645 RGD:11554173
G Idh2 isocitrate dehydrogenase (NADP(+)) 2 JBrowse link 1 141,874,354 141,893,674 RGD:11554173
G Il4r interleukin 4 receptor JBrowse link 1 196,942,343 196,967,221 RGD:2317263
G Il6 interleukin 6 JBrowse link 4 3,043,231 3,047,807 RGD:2317167
RGD:14975292
RGD:11554173
G Kmt2c lysine methyltransferase 2C JBrowse link 4
4		 82,506
6,083,650		 109,986
6,294,413		 RGD:11554173
G Kras KRAS proto-oncogene, GTPase JBrowse link 4 179,482,562 179,515,483 RGD:11554173
G Krt7 keratin 7 JBrowse link 7 143,059,731 143,075,907 RGD:2317308
G Mdm2 MDM2 proto-oncogene JBrowse link 7 60,719,060 60,743,618 RGD:2317417
G Met MET proto-oncogene, receptor tyrosine kinase JBrowse link 4 44,747,467 44,854,628 RGD:2317601
RGD:2317578
G Mgmt O-6-methylguanine-DNA methyltransferase JBrowse link 1 209,237,255 209,464,189 RGD:2317632
G Mki67 marker of proliferation Ki-67 JBrowse link 1 207,993,895 208,020,454 RGD:2317705
G Mmp2 matrix metallopeptidase 2 JBrowse link 19 15,542,771 15,570,589 RGD:2324667
RGD:2325769
G Mmp9 matrix metallopeptidase 9 JBrowse link 3 161,413,410 161,421,473 RGD:2325856
RGD:2324667
G Msln mesothelin JBrowse link 10 15,119,700 15,129,129 RGD:11554173
G Mthfr methylenetetrahydrofolate reductase JBrowse link 5 164,844,642 164,864,360 RGD:2317119
G Muc1 mucin 1, cell surface associated JBrowse link 2 188,543,137 188,547,874 RGD:2324622
RGD:2324664
RGD:2324667
RGD:2324638
RGD:2317986
G Muc16 mucin 16, cell surface associated JBrowse link 8 18,438,838 18,639,777 RGD:2325142
G Muc2 mucin 2, oligomeric mucus/gel-forming JBrowse link 1 214,663,929 214,693,197 RGD:2324948
G Muc3 mucin 3, intestinal JBrowse link 12 22,535,663 22,584,775 RGD:2324948
G Muc4 mucin 4, cell surface associated JBrowse link 11 71,242,973 71,285,217 RGD:2324944
RGD:2303602
G Muc5ac mucin 5AC, oligomeric mucus/gel-forming JBrowse link 1 214,725,482 214,756,653 RGD:2324990
RGD:2324948
G Muc5b mucin 5B, oligomeric mucus/gel-forming JBrowse link 1 214,778,459 214,811,237 RGD:2324948
G Muc6 mucin 6, oligomeric mucus/gel-forming JBrowse link 1 214,608,453 214,630,524 RGD:2325167
G Nat2 N-acetyltransferase 2 JBrowse link 16 23,960,709 23,991,570 RGD:2317172
G Ncam1 neural cell adhesion molecule 1 JBrowse link 8 53,836,797 54,134,881 RGD:2326079
G Nos2 nitric oxide synthase 2 JBrowse link 10 66,188,290 66,221,621 RGD:2325280
RGD:11554173
G Notch1 notch receptor 1 JBrowse link 3 3,905,562 3,951,015 RGD:2325330
G Ogg1 8-oxoguanine DNA glycosylase JBrowse link 4 145,282,828 145,289,367 RGD:2317134
RGD:2317136
G Pawr pro-apoptotic WT1 regulator JBrowse link 7 51,273,764 51,353,700 RGD:9835357
G Pbrm1 polybromo 1 JBrowse link 16 7,103,714 7,202,899 RGD:11554173
G Peg3 paternally expressed 3 JBrowse link 1 70,210,810 70,237,450 RGD:11554173
G Prkaca protein kinase cAMP-activated catalytic subunit alpha JBrowse link 19 25,095,089 25,118,869 RGD:11554173
G Prkacb protein kinase cAMP-activated catalytic subunit beta JBrowse link 2 252,602,197 252,691,886 RGD:11554173
G Prss2 protease, serine, 2 JBrowse link 4 70,689,737 70,694,816 RGD:2324908
G Pten phosphatase and tensin homolog JBrowse link 1 251,421,814 251,487,634 RGD:11554173
RGD:12802341
G Ptgs2 prostaglandin-endoperoxide synthase 2 JBrowse link 13 67,351,230 67,356,920 RGD:2317180
RGD:11554173
G Reg1a regenerating family member 1 alpha JBrowse link 4 109,497,962 109,500,626 RGD:10044031
G Rnf43 ring finger protein 43 JBrowse link 10 74,956,411 75,028,951 RGD:11554173
G Robo2 roundabout guidance receptor 2 JBrowse link 11 11,062,866 12,618,793 RGD:11554173
G Runx3 RUNX family transcription factor 3 JBrowse link 5 153,507,093 153,531,137 RGD:2324955
G Slc5a5 solute carrier family 5 member 5 JBrowse link 16 20,297,414 20,307,401 RGD:11554173
G Smad4 SMAD family member 4 JBrowse link 18 69,626,682 69,657,373 RGD:11554173
G Sox17 SRY-box transcription factor 17 JBrowse link 5 14,890,318 14,895,907 RGD:4889598
G Tgfb1 transforming growth factor, beta 1 JBrowse link 1 82,480,875 82,497,196 RGD:2325020
RGD:1299231
G Tgfbr2 transforming growth factor, beta receptor 2 JBrowse link 8 124,310,288 124,399,345 RGD:1299231
G Thbs1 thrombospondin 1 JBrowse link 3 109,862,120 109,873,466 RGD:2325027
RGD:2325026
RGD:2325024
G Tnc tenascin C JBrowse link 5 79,789,686 79,874,555 RGD:4889598
G Tp53 tumor protein p53 JBrowse link 10 56,186,299 56,198,449 RGD:11554173
G Ugt1a9 UDP glucuronosyltransferase family 1 member A9 JBrowse link 9 95,161,157 95,302,822 RGD:2325161
Cholangiofibrosis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cd40lg CD40 ligand JBrowse link X 159,703,703 159,714,886 RGD:11352285
G Gstp1 glutathione S-transferase pi 1 JBrowse link 1 219,291,679 219,294,147 RGD:10401932
G Idh1 isocitrate dehydrogenase (NADP(+)) 1 JBrowse link 9 71,882,108 71,911,645 RGD:14974230
cholangitis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abcb4 ATP binding cassette subfamily B member 4 JBrowse link 4 22,133,984 22,192,687 RGD:11554173
G Car2 carbonic anhydrase 2 JBrowse link 2 88,097,740 88,112,868 RGD:11554173
G Ccl2 C-C motif chemokine ligand 2 JBrowse link 10 69,412,065 69,413,863 RGD:14995925
G Col1a1 collagen type I alpha 1 chain JBrowse link 10 82,745,801 82,762,790 RGD:11554173
G Cxcl2 C-X-C motif chemokine ligand 2 JBrowse link 14 18,731,346 18,733,391 RGD:14995925
G Egr1 early growth response 1 JBrowse link 18 27,657,903 27,660,101 RGD:11554173
G Itgb6 integrin subunit beta 6 JBrowse link 3 46,652,624 46,775,362 RGD:11554173
G Krt19 keratin 19 JBrowse link 10 88,055,843 88,060,560 RGD:11554173
G Muc3 mucin 3, intestinal JBrowse link 12 22,535,663 22,584,775 RGD:2325170
G Nras NRAS proto-oncogene, GTPase JBrowse link 2 205,553,119 205,563,716 RGD:14975104
G Pkhd1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin JBrowse link 9 26,164,969 26,736,704 RGD:14700923
G Tgfb2 transforming growth factor, beta 2 JBrowse link 13 105,039,639 105,142,010 RGD:11554173
G Timp1 TIMP metallopeptidase inhibitor 1 JBrowse link X 1,364,771 1,369,451 RGD:11554173
G Vdr vitamin D receptor JBrowse link 7 139,344,452 139,394,138 RGD:14401745
cholecystitis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abcb4 ATP binding cassette subfamily B member 4 JBrowse link 4 22,133,984 22,192,687 RGD:8554872
RGD:13592920
choledochal cyst term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aqp1 aquaporin 1 (Colton blood group) JBrowse link 4 85,551,503 85,563,683 RGD:11554173
G Cftr CF transmembrane conductance regulator JBrowse link 4 42,693,263 42,860,679 RGD:11554173
G Pkhd1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin JBrowse link 9 26,164,969 26,736,704 RGD:11554173
RGD:14700991
G Sct secretin JBrowse link 1 214,264,865 214,277,437 RGD:11554173
G Slc4a2 solute carrier family 4 member 2 JBrowse link 4 7,264,677 7,282,355 RGD:11554173
choledocholithiasis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aspg asparaginase JBrowse link 6 136,682,279 136,701,673 RGD:11554173
cholestasis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abcb11 ATP binding cassette subfamily B member 11 JBrowse link 3 55,480,024 55,587,946 RGD:1598571
RGD:14402414
RGD:14402412
RGD:11554173
G Abcb1b ATP-binding cassette, subfamily B (MDR/TAP), member 1B JBrowse link 4 22,225,123 22,307,577 RGD:1598589
G Abcb4 ATP binding cassette subfamily B member 4 JBrowse link 4 22,133,984 22,192,687 RGD:1598589
RGD:11565494
RGD:13592920
G Abcc2 ATP binding cassette subfamily C member 2 JBrowse link 1 263,554,426 263,612,556 RGD:1598571
RGD:11554173
RGD:11081011
RGD:11081007
RGD:1598614
G Abcc3 ATP binding cassette subfamily C member 3 JBrowse link 10 82,047,308 82,116,928 RGD:2301060
RGD:11554173
RGD:11535162
G Abcc4 ATP binding cassette subfamily C member 4 JBrowse link 15 103,695,415 103,927,980 RGD:2301085
G Abcg5 ATP binding cassette subfamily G member 5 JBrowse link 6 7,935,771 7,961,207 RGD:1598662
G Abcg8 ATP binding cassette subfamily G member 8 JBrowse link 6 7,961,413 7,980,708 RGD:1598662
G Adamts13 ADAM metallopeptidase with thrombospondin type 1 motif, 13 JBrowse link 3 5,519,921 5,558,390 RGD:2315953
G Adh5 alcohol dehydrogenase 5 (class III), chi polypeptide JBrowse link 2 243,728,500 243,740,907 RGD:5129088
G Agt angiotensinogen JBrowse link 19 57,321,594 57,333,460 RGD:11554173
G Alb albumin JBrowse link 14 19,176,275 19,191,793 RGD:11035297
G Aldh1b1 aldehyde dehydrogenase 1 family, member B1 JBrowse link 5 61,382,351 61,387,359 RGD:11554173
G Aldh8a1 aldehyde dehydrogenase 8 family, member A1 JBrowse link 1 16,910,043 16,929,465 RGD:11554173
G Apoc3 apolipoprotein C3 JBrowse link 8 50,529,318 50,531,498 RGD:10054045
G Apoe apolipoprotein E JBrowse link 1 80,612,894 80,616,820 RGD:2317548
G Arg1 arginase 1 JBrowse link 1 21,525,421 21,537,872 RGD:4143230
G Arntl aryl hydrocarbon receptor nuclear translocator-like JBrowse link 1 178,039,002 178,137,469 RGD:10043349
G Bcat1 branched chain amino acid transaminase 1 JBrowse link 4 179,259,305 179,340,021 RGD:11554173
G Bex4 brain expressed, X-linked 4 RGD:11554173
G Blvra biliverdin reductase A JBrowse link 3 119,552,550 119,577,796 RGD:11554173
G Btg3 BTG anti-proliferation factor 3 JBrowse link 11 16,873,642 16,889,100 RGD:11554173
G Cadps2 calcium dependent secretion activator 2 JBrowse link 4 50,326,447 50,861,161 RGD:11554173
G Cat catalase JBrowse link 3 93,379,872 93,412,058 RGD:5130873
RGD:11554173
G Ccl7 C-C motif chemokine ligand 7 JBrowse link 10 69,423,083 69,424,933 RGD:11554173
G Cd14 CD14 molecule JBrowse link 18 29,560,341 29,562,290 RGD:7183752
G Cd44 CD44 molecule (Indian blood group) JBrowse link 3 92,695,083 92,783,820 RGD:2289372
G Cftr CF transmembrane conductance regulator JBrowse link 4 42,693,263 42,860,679 RGD:1599598
G Clock clock circadian regulator JBrowse link 14 34,418,226 34,502,218 RGD:10043349
G Col1a1 collagen type I alpha 1 chain JBrowse link 10 82,745,801 82,762,790 RGD:8552675
RGD:8552776
RGD:8552699
G Cp ceruloplasmin JBrowse link 2 104,744,249 104,803,034 RGD:14401716
G Cxcl2 C-X-C motif chemokine ligand 2 JBrowse link 14 18,731,346 18,733,391 RGD:11554173
G Cyp1a2 cytochrome P450, family 1, subfamily a, polypeptide 2 JBrowse link 8 62,451,360 62,458,244 RGD:11554173
G Cyp27a1 cytochrome P450, family 27, subfamily a, polypeptide 1 JBrowse link 9 81,968,285 81,998,213 RGD:11554173
G Cyp2b1 cytochrome P450, family 2, subfamily b, polypeptide 1 JBrowse link 7 99,142,431 99,183,540 RGD:11554173
G Cyp3a2 cytochrome P450, family 3, subfamily a, polypeptide 2 JBrowse link 12 11,641,500 11,677,818 RGD:13782189
G Cyp3a23/3a1 cytochrome P450, family 3, subfamily a, polypeptide 23/polypeptide 1 JBrowse link 12 11,053,888 11,082,742 RGD:13782189
G Cyp7a1 cytochrome P450 family 7 subfamily A member 1 JBrowse link 5 19,358,734 19,368,431 RGD:11554173
G Cyp7b1 cytochrome P450 family 7 subfamily B member 1 JBrowse link 2 102,701,903 102,871,257 RGD:11554173
G Cyp8b1 cytochrome P450 family 8 subfamily B member 1 JBrowse link 8 130,548,418 130,550,388 RGD:11554173
G Dgat2 diacylglycerol O-acyltransferase 2 JBrowse link 1 164,113,459 164,143,818 RGD:11554173
G Dnajb9 DnaJ heat shock protein family (Hsp40) member B9 JBrowse link 6 64,165,913 64,170,122 RGD:11554173
G Dnajc12 DnaJ heat shock protein family (Hsp40) member C12 JBrowse link 20 26,893,139 26,913,041 RGD:11554173
G Egr1 early growth response 1 JBrowse link 18 27,657,903 27,660,101 RGD:11554173
G Eng endoglin JBrowse link 3 11,679,530 11,717,486 RGD:7257529
G Erlec1 endoplasmic reticulum lectin 1 JBrowse link 14 115,314,890 115,352,871 RGD:11554173
G F2rl3 F2R like thrombin or trypsin receptor 3 JBrowse link 16 18,817,797 18,819,790 RGD:11554173
G Fga fibrinogen alpha chain JBrowse link 2 181,997,562 182,013,726 RGD:11554173
G G6pd glucose-6-phosphate dehydrogenase JBrowse link X 156,274,800 156,293,935 RGD:2307352
G Ghr growth hormone receptor JBrowse link 2 53,149,225 53,413,954 RGD:11567216
G Gstm1 glutathione S-transferase mu 1 JBrowse link 2 210,803,869 210,809,461 RGD:14701043
G Gstp1 glutathione S-transferase pi 1 JBrowse link 1 219,291,679 219,294,147 RGD:10401941
G Gtpbp2 GTP binding protein 2 JBrowse link 9 17,198,957 17,208,456 RGD:11554173
G Hacl1 2-hydroxyacyl-CoA lyase 1 JBrowse link 16 7,720,047 7,758,119 RGD:11554173
G Hao2 hydroxyacid oxidase 2 JBrowse link 2 200,785,492 200,808,868 RGD:11554173
G Hjv hemojuvelin BMP co-receptor JBrowse link 2 198,655,437 198,659,318 RGD:11554173
G Hoga1 4-hydroxy-2-oxoglutarate aldolase 1 JBrowse link 1 261,291,742 261,319,743 RGD:11554173
G Hp haptoglobin JBrowse link 19 42,096,255 42,100,805 RGD:1626374
G Hsd3b7 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7 JBrowse link 1 199,248,084 199,251,745 RGD:11554173
G Icam1 intercellular adhesion molecule 1 JBrowse link 8 22,035,287 22,047,049 RGD:11554173
G Id1 inhibitor of DNA binding 1, HLH protein JBrowse link 3 148,214,623 148,216,715 RGD:9686088
G Id4 inhibitor of DNA binding 4, HLH protein JBrowse link 17 16,692,557 16,695,126 RGD:11554173
G Igf1 insulin-like growth factor 1 JBrowse link 7 28,412,123 28,491,815 RGD:10046052
RGD:11554173
G Il1a interleukin 1 alpha JBrowse link 3 121,824,712 121,836,122 RGD:2311076
G Il2 interleukin 2 JBrowse link 2 123,847,150 123,851,854 RGD:14928214
G Il4 interleukin 4 JBrowse link 10 38,963,979 38,969,531 RGD:2317270
G Il6 interleukin 6 JBrowse link 4 3,043,231 3,047,807 RGD:11554173
G Kank1 KN motif and ankyrin repeat domains 1 JBrowse link 1 243,201,073 243,398,531 RGD:11554173
G Kmt2b lysine methyltransferase 2B JBrowse link 1 89,022,889 89,042,176 RGD:9588602
G Lamp2 lysosomal-associated membrane protein 2 JBrowse link X 124,722,628 124,766,079 RGD:13703118
G Lamp2em1 lysosomal-associated membrane protein 2; TALEN induced mutant1 RGD:13703118
G LOC498368 similar to RIKEN cDNA 0610040J01 JBrowse link 14 46,050,752 46,134,770 RGD:11554173
G Ly96 lymphocyte antigen 96 JBrowse link 5 1,972,212 1,989,448 RGD:11554173
G Maob monoamine oxidase B JBrowse link X 6,430,694 6,533,520 RGD:2307352
G Mapk13 mitogen activated protein kinase 13 JBrowse link 20 6,018,374 6,027,467 RGD:11554173
G Mapk14 mitogen activated protein kinase 14 JBrowse link 20 5,933,290 5,995,137 RGD:11554173
G Mboat1 membrane bound O-acyltransferase domain containing 1 JBrowse link 17 36,061,775 36,177,457 RGD:11554173
G Mir130b microRNA 130b JBrowse link 11 88,129,773 88,129,854 RGD:11554173
G Mir143 microRNA 143 JBrowse link 18 56,971,273 56,971,377 RGD:11554173
G Mir185 microRNA 185 JBrowse link 11 86,812,702 86,812,781 RGD:11554173
G Mir190 microRNA 190 JBrowse link 8 73,030,047 73,030,131 RGD:11554173
G Mir27b microRNA 27b JBrowse link 17 823,461 823,557 RGD:11554173
G Mir337 microRNA 337 JBrowse link 6 133,705,920 133,706,016 RGD:11554173
G Mir361 microRNA 361 JBrowse link X 84,708,911 84,708,980 RGD:11554173
G Mir377 microRNA 377 JBrowse link 6 133,890,690 133,890,761 RGD:11554173
G Mir411 microRNA 411 JBrowse link 6 133,858,849 133,858,924 RGD:11554173
G Mir875 microRNA 875 JBrowse link 7 74,423,233 74,423,305 RGD:11554173
G Mir99a microRNA 99a JBrowse link 11 16,052,153 16,052,233 RGD:11554173
G Mirlet7b microRNA let-7b JBrowse link 7 126,590,627 126,590,711 RGD:11554173
G Mirlet7i microRNA let-7i JBrowse link 7 66,802,731 66,802,815 RGD:11554173
G Mmp2 matrix metallopeptidase 2 JBrowse link 19 15,542,771 15,570,589 RGD:8552699
G Nfe2l2 nuclear factor, erythroid 2-like 2 JBrowse link 3 62,497,568 62,525,146 RGD:11554173
G Nfxl1 nuclear transcription factor, X-box binding-like 1 JBrowse link 14 38,192,462 38,233,852 RGD:11554173
G Niban1 niban apoptosis regulator 1 JBrowse link 13 68,949,665 69,101,600 RGD:11554173
G Nos2 nitric oxide synthase 2 JBrowse link 10 66,188,290 66,221,621 RGD:11554173
G Nos3 nitric oxide synthase 3 JBrowse link 4 7,321,908 7,342,404 RGD:7775033
G Npl N-acetylneuraminate pyruvate lyase JBrowse link 13 70,938,073 70,981,179 RGD:11554173
G Nqo1 NAD(P)H quinone dehydrogenase 1 JBrowse link 19 38,422,210 38,437,103 RGD:11554173
RGD:13439750
G Nr1d1 nuclear receptor subfamily 1, group D, member 1 JBrowse link 10 86,683,875 86,690,815 RGD:10448995
G Nr1h2 nuclear receptor subfamily 1, group H, member 2 JBrowse link 1 100,554,577 100,559,896 RGD:11554173
G Nr1h3 nuclear receptor subfamily 1, group H, member 3 JBrowse link 3 80,004,130 80,014,197 RGD:11554173
G Nr1h4 nuclear receptor subfamily 1, group H, member 4 JBrowse link 7 30,003,429 30,162,095 RGD:11554173
RGD:14701031
G Nr1i2 nuclear receptor subfamily 1, group I, member 2 JBrowse link 11 65,022,100 65,058,546 RGD:13782189
G Nr1i3 nuclear receptor subfamily 1, group I, member 3 JBrowse link 13 89,585,072 89,591,278 RGD:13782189
G Otc ornithine carbamoyltransferase JBrowse link X 13,524,804 13,601,074 RGD:4143230
G Pan2 poly(A) specific ribonuclease subunit PAN2 JBrowse link 7 2,717,021 2,736,541 RGD:11554173
G Pdgfb platelet derived growth factor subunit B JBrowse link 7 121,215,458 121,233,092 RGD:10449495
G Pdyn prodynorphin JBrowse link 3 122,194,327 122,206,671 RGD:11554173
G Pomc proopiomelanocortin JBrowse link 6 28,382,937 28,388,771 RGD:11554173
G Pon1 paraoxonase 1 JBrowse link 4 30,249,749 30,276,297 RGD:11554173
G Pygm glycogen phosphorylase, muscle associated JBrowse link 1 221,756,325 221,771,142 RGD:1599990
G Rdx radixin JBrowse link 8 56,570,728 56,612,851 RGD:11554173
G Reep5 receptor accessory protein 5 JBrowse link 18 27,128,462 27,159,693 RGD:11554173
G Rela RELA proto-oncogene, NF-kB subunit JBrowse link 1 220,992,770 221,003,249 RGD:11554173
G Rflnb refilin B JBrowse link 10 64,196,103 64,202,380 RGD:11554173
G Serpina1 serpin family A member 1 JBrowse link 6 127,610,241 127,632,265 RGD:11554173
G Serpina5 serpin family A member 5 JBrowse link 6 127,753,152 127,772,403 RGD:11554173
G Serpine1 serpin family E member 1 JBrowse link 12 22,641,104 22,651,482 RGD:11554173
G Slc10a7 solute carrier family 10, member 7 JBrowse link 19 32,857,984 33,081,359 RGD:11554173
G Slc16a2 solute carrier family 16 member 2 JBrowse link X 74,578,600 74,706,068 RGD:11554173
G Slc23a1 solute carrier family 23 member 1 JBrowse link 18 28,413,910 28,428,133 RGD:11554173
G Slc23a2 solute carrier family 23 member 2 JBrowse link 3 124,632,491 124,842,225 RGD:11554173
G Slc30a10 solute carrier family 30, member 10 JBrowse link 13 103,396,295 103,406,759 RGD:11554173
G Slc51a solute carrier family 51, alpha subunit JBrowse link 11 71,533,078 71,547,476 RGD:11554173
G Slc51b solute carrier family 51, beta subunit JBrowse link 8 70,930,196 70,938,559 RGD:11554173
G Slco1a4 solute carrier organic anion transporter family, member 1a4 JBrowse link 4 175,969,549 176,026,227 RGD:11554173
G Slco1b2 solute carrier organic anion transporter family, member 1B2 JBrowse link 4 175,814,118 175,881,775 RGD:2303109
G Snai1 snail family transcriptional repressor 1 JBrowse link 3 164,274,710 164,279,199 RGD:11554173
G Sorl1 sortilin related receptor 1 JBrowse link 8 46,228,077 46,287,171 RGD:11554173
G Spint1 serine peptidase inhibitor, Kunitz type 1 JBrowse link 3 111,049,132 111,061,991 RGD:10043111
G Spint2 serine peptidase inhibitor, Kunitz type, 2 JBrowse link 1 87,199,373 87,221,826 RGD:10043111
G Srp72 signal recognition particle 72 JBrowse link 14 33,447,583 33,453,788 RGD:11554173
G Sult2b1 sulfotransferase family 2B member 1 JBrowse link 1 101,712,254 101,774,683 RGD:11554173
G Timp1 TIMP metallopeptidase inhibitor 1 JBrowse link X 1,364,771 1,369,451 RGD:2290364
G Tjp1 tight junction protein 1 JBrowse link 1 126,146,489 126,515,359 RGD:2325141
G Tlr2 toll-like receptor 2 JBrowse link 2 182,840,171 182,846,061 RGD:11554173
G Tmed7 transmembrane p24 trafficking protein 7 JBrowse link 18 40,579,182 40,586,260 RGD:11554173
G Tmem117 transmembrane protein 117 JBrowse link 7 135,880,294 136,403,012 RGD:11554173
G Tnf tumor necrosis factor JBrowse link 20 5,189,382 5,192,000 RGD:11554173
G Uba5 ubiquitin-like modifier activating enzyme 5 JBrowse link 8 112,578,607 112,594,192 RGD:11554173
G Ugt1a1 UDP glucuronosyltransferase family 1 member A1 JBrowse link 9 95,295,701 95,302,822 RGD:14694823
G Utp4 UTP4 small subunit processome component JBrowse link 19 39,087,995 39,116,124 RGD:1600653
G Vcam1 vascular cell adhesion molecule 1 JBrowse link 2 219,071,193 219,090,931 RGD:11554173
G Vil1 villin 1 JBrowse link 9 81,689,802 81,717,623 RGD:11554173
G Vps33b VPS33B, late endosome and lysosome associated JBrowse link 1 142,060,955 142,083,955 RGD:1599749
G Wipi1 WD repeat domain, phosphoinositide interacting 1 JBrowse link 10 97,859,730 97,896,949 RGD:11554173
G Xdh xanthine dehydrogenase JBrowse link 6 25,149,570 25,211,273 RGD:13209135
chronic cholangitis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abcb4 ATP binding cassette subfamily B member 4 JBrowse link 4 22,133,984 22,192,687 RGD:14694983
COACH Syndrome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cc2d2a coiled-coil and C2 domain containing 2A JBrowse link 14 71,895,128 71,979,452 RGD:7240710
RGD:8554872
G Rpgrip1l Rpgrip1-like JBrowse link 19 17,115,266 17,208,055 RGD:7240710
RGD:8554872
G Tmem67 transmembrane protein 67 JBrowse link 5 25,666,138 25,721,056 RGD:7240710
RGD:8554872
RGD:11535946
RGD:11535944
common bile duct neoplasm term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Apob apolipoprotein B JBrowse link 6 33,176,826 33,216,381 RGD:2325763
G Fscn1 fascin actin-bundling protein 1 JBrowse link 12 13,655,459 13,668,595 RGD:2317789
G Msln mesothelin JBrowse link 10 15,119,700 15,129,129 RGD:2326064
G Mtap methylthioadenosine phosphorylase JBrowse link 5 107,711,077 107,777,530 RGD:2317954
G Muc1 mucin 1, cell surface associated JBrowse link 2 188,543,137 188,547,874 RGD:2324856
G Muc4 mucin 4, cell surface associated JBrowse link 11 71,242,973 71,285,217 RGD:2324890
G Muc5ac mucin 5AC, oligomeric mucus/gel-forming JBrowse link 1 214,725,482 214,756,653 RGD:2324890
G Tymp thymidine phosphorylase JBrowse link 7 130,342,481 130,347,845 RGD:2325158
congenital bile acid synthesis defect term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Akr1d1 aldo-keto reductase family 1, member D1 JBrowse link 4 65,110,706 65,143,930 RGD:8554872
G Cyp7b1 cytochrome P450 family 7 subfamily B member 1 JBrowse link 2 102,701,903 102,871,257 RGD:8554872
congenital bile acid synthesis defect 1 term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hsd3b7 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7 JBrowse link 1 199,248,084 199,251,745 RGD:7240710
RGD:8554872
G Tjp2 tight junction protein 2 JBrowse link 1 241,945,816 242,084,044 RGD:8554872
congenital bile acid synthesis defect 2 term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Akr1d1 aldo-keto reductase family 1, member D1 JBrowse link 4 65,110,706 65,143,930 RGD:7240710
RGD:8554872
RGD:11554173
congenital bile acid synthesis defect 3 term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cyp7b1 cytochrome P450 family 7 subfamily B member 1 JBrowse link 2 102,701,903 102,871,257 RGD:7240710
RGD:8554872
congenital bile acid synthesis defect 4 term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Amacr alpha-methylacyl-CoA racemase JBrowse link 2 60,949,276 60,961,342 RGD:7240710
RGD:8554872
congenital bile acid synthesis defect 5 term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abcd3 ATP binding cassette subfamily D member 3 JBrowse link 2 225,335,708 225,389,120 RGD:8554872
RGD:7240710
congenital bile acid synthesis defect 6 term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acox2 acyl-CoA oxidase 2 JBrowse link 15 18,449,304 18,481,472 RGD:8554872
RGD:7240710
extrahepatic cholestasis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acta2 actin alpha 2, smooth muscle JBrowse link 1 252,537,614 252,550,394 RGD:11554173
G Alb albumin JBrowse link 14 19,176,275 19,191,793 RGD:11554173
G Ccn2 cellular communication network factor 2 JBrowse link 1 21,851,657 21,854,773 RGD:11554173
G Cd68 Cd68 molecule JBrowse link 10 56,268,726 56,270,605 RGD:11554173
G Col1a1 collagen type I alpha 1 chain JBrowse link 10 82,745,801 82,762,790 RGD:11554173
G Col3a1 collagen type III alpha 1 chain JBrowse link 9 52,023,295 52,059,221 RGD:11554173
G Crh corticotropin releasing hormone JBrowse link 2 104,459,999 104,461,863 RGD:5490980
G Cygb cytoglobin JBrowse link 10 105,618,325 105,628,091 RGD:11554173
G Fos Fos proto-oncogene, AP-1 transcription factor subunit JBrowse link 6 109,300,433 109,303,299 RGD:11554173
G Gjb1 gap junction protein, beta 1 JBrowse link X 71,272,030 71,279,973 RGD:7349397
G Gjb2 gap junction protein, beta 2 JBrowse link 15 37,377,313 37,394,494 RGD:7349397
G Hamp hepcidin antimicrobial peptide JBrowse link 1 89,368,021 89,369,960 RGD:11041639
G Hmgb1 high mobility group box 1 JBrowse link 12 7,082,529 7,090,246 RGD:11554173
G Hmgcs2 3-hydroxy-3-methylglutaryl-CoA synthase 2 JBrowse link 2 200,452,623 200,480,785 RGD:2326121
G Hnf1a HNF1 homeobox A JBrowse link 12 47,407,811 47,433,342 RGD:14700989
G Il1b interleukin 1 beta JBrowse link 3 121,876,256 121,882,637 RGD:11554173
G Il6 interleukin 6 JBrowse link 4 3,043,231 3,047,807 RGD:11554173
G Jun Jun proto-oncogene, AP-1 transcription factor subunit JBrowse link 5 114,011,184 114,014,277 RGD:11554173
G Keap1 Kelch-like ECH-associated protein 1 JBrowse link 8 22,250,518 22,259,868 RGD:11554173
G Lgals1 galectin 1 JBrowse link 7 120,153,184 120,156,290 RGD:2316551
G Map3k7 mitogen activated protein kinase kinase kinase 7 JBrowse link 5 47,183,142 47,244,424 RGD:11554173
G Mapk1 mitogen activated protein kinase 1 JBrowse link 11 88,203,863 88,273,301 RGD:11554173
G Mapk14 mitogen activated protein kinase 14 JBrowse link 20 5,933,290 5,995,137 RGD:11554173
G Mapk3 mitogen activated protein kinase 3 JBrowse link 1 198,192,773 198,198,975 RGD:11554173
G Mapk8 mitogen-activated protein kinase 8 JBrowse link 16 9,620,854 9,709,342 RGD:11554173
G Mapk9 mitogen-activated protein kinase 9 JBrowse link 10 35,333,859 35,374,364 RGD:11554173
G Mmp2 matrix metallopeptidase 2 JBrowse link 19 15,542,771 15,570,589 RGD:11554173
G Mmp9 matrix metallopeptidase 9 JBrowse link 3 161,413,410 161,421,473 RGD:11554173
G Mpo myeloperoxidase JBrowse link 10 75,087,892 75,098,260 RGD:11554173
G Myd88 MYD88, innate immune signal transduction adaptor JBrowse link 8 128,022,512 128,027,462 RGD:11554173
G Nfe2l2 nuclear factor, erythroid 2-like 2 JBrowse link 3 62,497,568 62,525,146 RGD:11554173
G Nos2 nitric oxide synthase 2 JBrowse link 10 66,188,290 66,221,621 RGD:11554173
G Nos3 nitric oxide synthase 3 JBrowse link 4 7,321,908 7,342,404 RGD:11554173
G Nr1h4 nuclear receptor subfamily 1, group H, member 4 JBrowse link 7 30,003,429 30,162,095 RGD:1625205
RGD:14928333
G Pdgfrb platelet derived growth factor receptor beta JBrowse link 18 56,364,586 56,406,381 RGD:10449503
G Ptn pleiotrophin JBrowse link 4 64,239,156 64,330,996 RGD:2316551
G Rela RELA proto-oncogene, NF-kB subunit JBrowse link 1 220,992,770 221,003,249 RGD:11554173
G Setd7 SET domain containing 7, histone lysine methyltransferase JBrowse link 2 140,576,188 140,618,405 RGD:9491846
G Slc22a1 solute carrier family 22 member 1 JBrowse link 1 48,273,639 48,300,645 RGD:7243879
G Slc22a2 solute carrier family 22 member 2 JBrowse link 1 48,318,025 48,360,219 RGD:7243879
G Tgfb1 transforming growth factor, beta 1 JBrowse link 1 82,480,875 82,497,196 RGD:11554173
G Timp1 TIMP metallopeptidase inhibitor 1 JBrowse link X 1,364,771 1,369,451 RGD:11554173
G Timp2 TIMP metallopeptidase inhibitor 2 JBrowse link 10 107,338,465 107,386,072 RGD:11554173
G Tlr4 toll-like receptor 4 JBrowse link 5 82,587,424 82,601,056 RGD:11554173
G Tnf tumor necrosis factor JBrowse link 20 5,189,382 5,192,000 RGD:11554173
fascioliasis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ctsb cathepsin B JBrowse link 15 46,316,741 46,337,613 RGD:2315504
G Glud1 glutamate dehydrogenase 1 JBrowse link 16 10,661,486 10,695,557 RGD:6484593
GRACILE syndrome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bcs1l BCS1 homolog, ubiquinol-cytochrome c reductase complex chaperone JBrowse link 9 81,868,158 81,872,201 RGD:7240710
RGD:8554872
intrahepatic cholangiocarcinoma term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Apc APC regulator of WNT signaling pathway JBrowse link 18 27,011,710 27,106,323 RGD:8554872
G Arid1a AT-rich interaction domain 1A JBrowse link 5 151,904,687 151,977,973 RGD:14974231
G Becn1 beclin 1 JBrowse link 10 89,209,944 89,225,297 RGD:14974231
G Fas Fas cell surface death receptor JBrowse link 1 252,589,785 252,624,790 RGD:14700701
G Faslg Fas ligand JBrowse link 13 79,696,811 79,717,581 RGD:14700701
G Idh1 isocitrate dehydrogenase (NADP(+)) 1 JBrowse link 9 71,882,108 71,911,645 RGD:14974229
G Idh2 isocitrate dehydrogenase (NADP(+)) 2 JBrowse link 1 141,874,354 141,893,674 RGD:14985256
G Kras KRAS proto-oncogene, GTPase JBrowse link 4 179,482,562 179,515,483 RGD:13592920
RGD:14398746
G Mir200b microRNA 200b JBrowse link 5 173,490,144 173,490,238 RGD:14928335
G Mir21 microRNA 21 JBrowse link 10 73,902,210 73,902,301 RGD:14928335
G Mir221 microRNA 221 JBrowse link X 3,684,480 3,684,588 RGD:14928335
intrahepatic cholestasis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abcb11 ATP binding cassette subfamily B member 11 JBrowse link 3 55,480,024 55,587,946 RGD:1598583
RGD:8554872
RGD:14688049
RGD:11554173
G Abcb4 ATP binding cassette subfamily B member 4 JBrowse link 4 22,133,984 22,192,687 RGD:1300325
RGD:14695045
RGD:14695044
RGD:13592920
RGD:8554872
G Ap1s1 adaptor related protein complex 1 subunit sigma 1 JBrowse link 12 22,665,128 22,676,079 RGD:11554173
G Atp8b1 ATPase phospholipid transporting 8B1 JBrowse link 18 60,013,388 60,152,920 RGD:1599397
RGD:8554872
RGD:11554173
G Cxcl2 C-X-C motif chemokine ligand 2 JBrowse link 14 18,731,346 18,733,391 RGD:5135233
G Cyp2e1 cytochrome P450, family 2, subfamily e, polypeptide 1 JBrowse link 1 213,511,892 213,522,195 RGD:14700873
G Egr1 early growth response 1 JBrowse link 18 27,657,903 27,660,101 RGD:11554173
G Entpd1 ectonucleoside triphosphate diphosphohydrolase 1 JBrowse link 1 259,692,020 259,818,922 RGD:9685454
G Hsd3b7 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7 JBrowse link 1 199,248,084 199,251,745 RGD:1599971
G Maf MAF bZIP transcription factor JBrowse link 19 48,179,826 48,200,995 RGD:11554173
G Mafg MAF bZIP transcription factor G JBrowse link 10 109,802,877 109,811,476 RGD:11554173
G Mir27a microRNA 27a JBrowse link 19 25,318,736 25,318,822 RGD:14695552
G Nr0b2 nuclear receptor subfamily 0, group B, member 2 JBrowse link 5 151,776,004 151,779,319 RGD:2311605
G Nr1h4 nuclear receptor subfamily 1, group H, member 4 JBrowse link 7 30,003,429 30,162,095 RGD:1625202
RGD:8554872
G Slc22a1 solute carrier family 22 member 1 JBrowse link 1 48,273,639 48,300,645 RGD:7243885
G Slc22a2 solute carrier family 22 member 2 JBrowse link 1 48,318,025 48,360,219 RGD:7243885
G Tjp2 tight junction protein 2 JBrowse link 1 241,945,816 242,084,044 RGD:11554173
intrahepatic cholestasis of pregnancy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abcb4 ATP binding cassette subfamily B member 4 JBrowse link 4 22,133,984 22,192,687 RGD:11554173
G Atp8b1 ATPase phospholipid transporting 8B1 JBrowse link 18 60,013,388 60,152,920 RGD:11554173
RGD:8554872
G Hdac3 histone deacetylase 3 JBrowse link 18 31,073,057 31,094,347 RGD:14696655
G Il18 interleukin 18 JBrowse link 8 55,009,666 55,016,286 RGD:14696655
G Tnf tumor necrosis factor JBrowse link 20 5,189,382 5,192,000 RGD:11554173
G Vcam1 vascular cell adhesion molecule 1 JBrowse link 2 219,071,193 219,090,931 RGD:11554173
intrahepatic cholestasis of pregnancy 1 term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atp8b1 ATPase phospholipid transporting 8B1 JBrowse link 18 60,013,388 60,152,920 RGD:7240710
intrahepatic cholestasis of pregnancy 3 term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abcb4 ATP binding cassette subfamily B member 4 JBrowse link 4 22,133,984 22,192,687 RGD:7240710
RGD:8554872
Klatskin's tumor term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Apc APC regulator of WNT signaling pathway JBrowse link 18 27,011,710 27,106,323 RGD:8554872
Nisch syndrome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cldn1 claudin 1 JBrowse link 11 77,815,216 77,830,373 RGD:7240710
RGD:11341732
RGD:8554872
North American Indian Childhood Cirrhosis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Utp4 UTP4 small subunit processome component JBrowse link 19 39,087,995 39,116,124 RGD:8554872
RGD:7240710
obstructive jaundice term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abcb4 ATP binding cassette subfamily B member 4 JBrowse link 4 22,133,984 22,192,687 RGD:11554173
G Adm adrenomedullin JBrowse link 1 175,443,189 175,447,260 RGD:7364952
G Alb albumin JBrowse link 14 19,176,275 19,191,793 RGD:11036102
G Ccl2 C-C motif chemokine ligand 2 JBrowse link 10 69,412,065 69,413,863 RGD:8549649
G Cd14 CD14 molecule JBrowse link 18 29,560,341 29,562,290 RGD:9685190
G Cfh complement factor H JBrowse link 13 56,979,155 57,080,540 RGD:7364952
G Lbp lipopolysaccharide binding protein JBrowse link 3 154,786,232 154,812,910 RGD:9685190
G Pcna proliferating cell nuclear antigen JBrowse link 3 124,880,698 124,884,570 RGD:10448973
G Ucp2 uncoupling protein 2 JBrowse link 1 165,506,375 165,512,744 RGD:7204429
primary biliary cirrhosis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abcb4 ATP binding cassette subfamily B member 4 JBrowse link 4 22,133,984 22,192,687 RGD:11554173
RGD:14694982
G Abcc2 ATP binding cassette subfamily C member 2 JBrowse link 1 263,554,426 263,612,556 RGD:11554173
RGD:14700810
G Abcg2 ATP binding cassette subfamily G member 2 JBrowse link 4 88,765,441 88,890,268 RGD:11554173
G Ace angiotensin I converting enzyme JBrowse link 10 94,170,766 94,213,831 RGD:2325226
G Ace2 angiotensin I converting enzyme 2 JBrowse link X 32,050,734 32,095,860 RGD:9685452
G Agt angiotensinogen JBrowse link 19 57,321,594 57,333,460 RGD:9685452
G Alb albumin JBrowse link 14 19,176,275 19,191,793 RGD:11554173
G Aqp4 aquaporin 4 JBrowse link 18 6,766,009 6,782,757 RGD:5148030
G Ccl5 C-C motif chemokine ligand 5 JBrowse link 10 70,739,764 70,744,303 RGD:11554173
RGD:14995336
G Ccn2 cellular communication network factor 2 JBrowse link 1 21,851,657 21,854,773 RGD:2314517
G Cd3d CD3d molecule JBrowse link 8 49,282,502 49,287,095 RGD:11554173
G Cd80 Cd80 molecule JBrowse link 11 64,815,201 64,855,293 RGD:11554173
G Cdh5 cadherin 5 JBrowse link 19 1,025,122 1,074,333 RGD:11554173
G Cdkn1a cyclin-dependent kinase inhibitor 1A JBrowse link 20 6,348,422 6,358,864 RGD:8662434
G Clec16a C-type lectin domain containing 16A JBrowse link 10 5,002,196 5,196,914 RGD:11554173
G Col1a1 collagen type I alpha 1 chain JBrowse link 10 82,745,801 82,762,790 RGD:8552731
G Cpeb1 cytoplasmic polyadenylation element binding protein 1 JBrowse link 1 143,171,457 143,278,485 RGD:11528851
G Cpeb4 cytoplasmic polyadenylation element binding protein 4 JBrowse link 10 15,984,520 16,047,209 RGD:11528851
G Ctla4 cytotoxic T-lymphocyte-associated protein 4 JBrowse link 9 67,699,397 67,706,068 RGD:2301998
RGD:14398744
RGD:14398743
RGD:14398725
G Cxcl10 C-X-C motif chemokine ligand 10 JBrowse link 14 17,210,733 17,212,930 RGD:11554173
G Cxcl9 C-X-C motif chemokine ligand 9 JBrowse link 14 17,228,832 17,233,743 RGD:11554173
G Cxcr5 C-X-C motif chemokine receptor 5 JBrowse link 8 48,835,688 48,852,032 RGD:11554173
G Cygb cytoglobin JBrowse link 10 105,618,325 105,628,091 RGD:11554173
G Dag1 dystroglycan 1 JBrowse link 8 116,980,501 116,993,182 RGD:2314895
G Dennd1b DENN domain containing 1B JBrowse link 13 56,015,813 56,242,041 RGD:11554173
G Entpd2 ectonucleoside triphosphate diphosphohydrolase 2 JBrowse link 3 2,617,795 2,623,818 RGD:9685530
RGD:11554173
G Fas Fas cell surface death receptor JBrowse link 1 252,589,785 252,624,790 RGD:14700711
G Hamp hepcidin antimicrobial peptide JBrowse link 1 89,368,021 89,369,960 RGD:11041639
RGD:11041732
G Hhip Hedgehog-interacting protein JBrowse link 19 31,525,134 31,614,487 RGD:11552599
G Hif1a hypoxia inducible factor 1 subunit alpha JBrowse link 6 96,810,868 96,856,303 RGD:11554173
G Hmox1 heme oxygenase 1 JBrowse link 19 14,508,634 14,515,455 RGD:625603
G Icam1 intercellular adhesion molecule 1 JBrowse link 8 22,035,287 22,047,049 RGD:11520783
G Igfbp1 insulin-like growth factor binding protein 1 JBrowse link 14 87,448,716 87,453,783 RGD:11554173
G Il12a interleukin 12A JBrowse link 2 165,076,945 165,083,996 RGD:11554173
G Il12b interleukin 12B JBrowse link 10 30,034,447 30,048,774 RGD:11554173
G Il12rb1 interleukin 12 receptor subunit beta 1 JBrowse link 16 20,370,722 20,383,576 RGD:14700865
G Il4 interleukin 4 JBrowse link 10 38,963,979 38,969,531 RGD:7829828
G Il7r interleukin 7 receptor RGD:11554173
G Jak2 Janus kinase 2 JBrowse link 1 247,398,667 247,457,521 RGD:10403061
G Keap1 Kelch-like ECH-associated protein 1 JBrowse link 8 22,250,518 22,259,868 RGD:11554173
G Krt7 keratin 7 JBrowse link 7 143,059,731 143,075,907 RGD:11554173
G Lbr lamin B receptor JBrowse link 13 100,431,390 100,450,209 RGD:9588625
G Lep leptin JBrowse link 4 56,337,695 56,351,818 RGD:10411894
G Lepr leptin receptor JBrowse link 5 120,503,475 120,682,281 RGD:10411894
G Lox lysyl oxidase JBrowse link 18 47,500,320 47,577,819 RGD:11554173
G Loxl2 lysyl oxidase-like 2 JBrowse link 15 51,276,022 51,365,238 RGD:11554173
G Map3k14 mitogen-activated protein kinase kinase kinase 14 JBrowse link 10 91,303,428 91,353,601 RGD:13592920
G Mapk14 mitogen activated protein kinase 14 JBrowse link 20 5,933,290 5,995,137 RGD:11554173
G Mas1 MAS1 proto-oncogene, G protein-coupled receptor JBrowse link 1 48,076,761 48,108,218 RGD:9685452
G Met MET proto-oncogene, receptor tyrosine kinase JBrowse link 4 44,747,467 44,854,628 RGD:14694826
G Mmel1 membrane metallo-endopeptidase-like 1 JBrowse link 5 172,273,450 172,303,905 RGD:11554173
G Mmp13 matrix metallopeptidase 13 JBrowse link 8 5,522,739 5,533,018 RGD:8552731
G Mmp2 matrix metallopeptidase 2 JBrowse link 19 15,542,771 15,570,589 RGD:8552731
G Mmp3 matrix metallopeptidase 3 JBrowse link 8 5,676,608 5,698,579 RGD:8552731
G Mmp9 matrix metallopeptidase 9 JBrowse link 3 161,413,410 161,421,473 RGD:8552731
G Muc2 mucin 2, oligomeric mucus/gel-forming JBrowse link 1 214,663,929 214,693,197 RGD:2324885
G Nfe2l2 nuclear factor, erythroid 2-like 2 JBrowse link 3 62,497,568 62,525,146 RGD:11554173
G Nfkb1 nuclear factor kappa B subunit 1 JBrowse link 2 240,773,520 240,890,053 RGD:11554173
G Nos2 nitric oxide synthase 2 JBrowse link 10 66,188,290 66,221,621 RGD:5509055
RGD:11554173
G Nos3 nitric oxide synthase 3 JBrowse link 4 7,321,908 7,342,404 RGD:11554173
G Nr1h4 nuclear receptor subfamily 1, group H, member 4 JBrowse link 7 30,003,429 30,162,095 RGD:14928336
G Nr3c1 nuclear receptor subfamily 3, group C, member 1 JBrowse link 18 31,728,373 32,704,022 RGD:4892607
G Nsa2 NSA2 ribosome biogenesis factor JBrowse link 2 27,942,546 27,949,089 RGD:11554173
G Nup62 nucleoporin 62 JBrowse link 1 100,811,140 100,827,119 RGD:9831196
G Pde5a phosphodiesterase 5A JBrowse link 2 226,899,604 227,044,916 RGD:2314466
G Ppargc1a PPARG coactivator 1 alpha JBrowse link 14 63,095,291 63,190,688 RGD:6484526
G Rela RELA proto-oncogene, NF-kB subunit JBrowse link 1 220,992,770 221,003,249 RGD:11554173
G Ren renin JBrowse link 13 50,502,724 50,513,953 RGD:6892690
G Rps6kb1 ribosomal protein S6 kinase B1 JBrowse link 10 73,824,200 73,865,503 RGD:1642977
G RT1-Ba RT1 class II, locus Ba JBrowse link 20 4,066,133 4,070,726 RGD:14401562
G Slc4a2 solute carrier family 4 member 2 JBrowse link 4 7,264,677 7,282,355 RGD:11554173
G Slc51a solute carrier family 51, alpha subunit JBrowse link 11 71,533,078 71,547,476 RGD:11554173
G Slc51b solute carrier family 51, beta subunit JBrowse link 8 70,930,196 70,938,559 RGD:11554173
G Slco1a1 solute carrier organic anion transporter family, member 1a1 JBrowse link 4 176,158,174 176,231,331 RGD:14700810
G Slco1c1 solute carrier organic anion transporter family, member 1c1 JBrowse link 4 175,729,709 175,776,749 RGD:14700810
G Sod2 superoxide dismutase 2 JBrowse link 1 47,914,757 47,921,587 RGD:2317411
G Spib Spi-B transcription factor JBrowse link 1 100,531,538 100,537,397 RGD:11554173
G Spint1 serine peptidase inhibitor, Kunitz type 1 JBrowse link 3 111,049,132 111,061,991 RGD:10043111
G Spint2 serine peptidase inhibitor, Kunitz type, 2 JBrowse link 1 87,199,373 87,221,826 RGD:10043111
G Stat4 signal transducer and activator of transcription 4 JBrowse link 9 54,340,649 54,457,753 RGD:11554173
G Tgfb1 transforming growth factor, beta 1 JBrowse link 1 82,480,875 82,497,196 RGD:11554173
G Tnf tumor necrosis factor JBrowse link 20 5,189,382 5,192,000 RGD:14995307
G Tnfrsf1a TNF receptor superfamily member 1A JBrowse link 4 157,864,905 157,877,634 RGD:11554173
G Tyk2 tyrosine kinase 2 JBrowse link 8 22,118,224 22,149,807 RGD:11554173
G Ubd ubiquitin D JBrowse link 20 1,876,175 1,878,126 RGD:11554173
G Utp4 UTP4 small subunit processome component JBrowse link 19 39,087,995 39,116,124 RGD:1600653
G Vdr vitamin D receptor JBrowse link 7 139,344,452 139,394,138 RGD:1331525
RGD:14402024
RGD:14401750
G Vegfa vascular endothelial growth factor A JBrowse link 9 17,340,341 17,355,681 RGD:11528851
primary sclerosing cholangitis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abcb4 ATP binding cassette subfamily B member 4 JBrowse link 4 22,133,984 22,192,687 RGD:13592920
G Gnrhr gonadotropin releasing hormone receptor JBrowse link 14 23,480,462 23,498,450 RGD:14928320
G Mir200b microRNA 200b JBrowse link 5 173,490,144 173,490,238 RGD:14928323
G RT1-Bb RT1 class II, locus Bb JBrowse link 20 4,043,726 4,049,367 RGD:14865010
G Tnf tumor necrosis factor JBrowse link 20 5,189,382 5,192,000 RGD:14995307
G Vdr vitamin D receptor JBrowse link 7 139,344,452 139,394,138 RGD:14401745
progressive familial intrahepatic cholestasis 1 term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abcb11 ATP binding cassette subfamily B member 11 JBrowse link 3 55,480,024 55,587,946 RGD:11554173
G Abcb4 ATP binding cassette subfamily B member 4 JBrowse link 4 22,133,984 22,192,687 RGD:11554173
G Atp8b1 ATPase phospholipid transporting 8B1 JBrowse link 18 60,013,388 60,152,920 RGD:7240710
progressive familial intrahepatic cholestasis 2 term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abcb11 ATP binding cassette subfamily B member 11 JBrowse link 3 55,480,024 55,587,946 RGD:7240710
RGD:8554872
RGD:14688048
RGD:14402418
G Atp8b1 ATPase phospholipid transporting 8B1 JBrowse link 18 60,013,388 60,152,920 RGD:8554872
progressive familial intrahepatic cholestasis 3 term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abcb4 ATP binding cassette subfamily B member 4 JBrowse link 4 22,133,984 22,192,687 RGD:7240710
RGD:8554872
RGD:11554173
progressive familial intrahepatic cholestasis 4 term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tjp2 tight junction protein 2 JBrowse link 1 241,945,816 242,084,044 RGD:7240710
RGD:8554872
progressive familial intrahepatic cholestasis 5 term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nr1h4 nuclear receptor subfamily 1, group H, member 4 JBrowse link 7 30,003,429 30,162,095 RGD:8554872
RGD:7240710
Reynolds Syndrome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Lbr lamin B receptor JBrowse link 13 100,431,390 100,450,209 RGD:7240710
RGD:8554872
sclerosing cholangitis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abcb4 ATP binding cassette subfamily B member 4 JBrowse link 4 22,133,984 22,192,687 RGD:11554173
RGD:14694980
G Bcl2l11 BCL2 like 11 JBrowse link 3 120,726,906 120,764,192 RGD:11554173
G Dcdc2 doublecortin domain containing 2 JBrowse link 17 41,838,201 42,031,265 RGD:8554872
RGD:11568452
G Hif1a hypoxia inducible factor 1 subunit alpha JBrowse link 6 96,810,868 96,856,303 RGD:11554173
G Mst1 macrophage stimulating 1 JBrowse link 8 116,857,716 116,862,286 RGD:11554173
G Nos2 nitric oxide synthase 2 JBrowse link 10 66,188,290 66,221,621 RGD:11554173
G Ubash3a ubiquitin associated and SH3 domain containing, A JBrowse link 20 9,941,102 9,986,012 RGD:11554173
Term paths to the root
Path 1
Term Annotations click to browse term
  disease 15625
    disease of anatomical entity 14954
      gastrointestinal system disease 4375
        biliary tract disease 403
          bile duct disease 373
            Bile Duct Neoplasms + 84
            Cholangiofibrosis 3
            ampulla of Vater neoplasm + 0
            biliary atresia + 15
            cholangitis + 25
            choledochal cyst + 7
            cholestasis + 282
            common bile duct disease + 9
            extrahepatic bile duct lipoma 0
            fascioliasis 2
            perforation of bile duct 0
Path 2
Term Annotations click to browse term
  disease 15625
    disease of anatomical entity 14954
      gastrointestinal system disease 4375
        hepatobiliary disease 2405
          biliary tract disease 403
            bile duct disease 373
              Bile Duct Neoplasms + 84
              Cholangiofibrosis 3
              ampulla of Vater neoplasm + 0
              biliary atresia + 15
              cholangitis + 25
              choledochal cyst + 7
              cholestasis + 282
              common bile duct disease + 9
              extrahepatic bile duct lipoma 0
              fascioliasis 2
              perforation of bile duct 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.