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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.

Term:pleural empyema
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Accession:DOID:3798 term browser browse the term
Definition:Suppurative inflammation of the pleural space.
Synonyms:exact_synonym: Empyema of pleura;   Empyema of pleura without fistula;   Empyema with no fistula;   Empyema without mention of fistula;   Empyema, chest;   Pleural Empyemas;   Pleural empyema with fistula;   Pyothorax;   Thoracic Empyema;   Thoracic Empyemas;   abscess of pleural cavity;   abscess of thorax;   empyema with fistula;   lung empyema;   pleural empyema with no fistula;   purulent pleurisy;   purulent pleuritis;   thorax abscess
 primary_id: MESH:D016724
 alt_id: RDO:0005464
 xref: ICD10CM:J86;   ICD10CM:J86.9;   NCI:C45692
For additional species annotation, visit the Alliance of Genome Resources.


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pleural empyema term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Plau plasminogen activator, urokinase ISO Gene product used in treatment of disease RGD PMID:20304453 RGD:4891955 NCBI chr15:3,644,296...3,650,765
Ensembl chr15:3,644,769...3,650,819
JBrowse link
G Tnc tenascin C ISO protein:increased expression:pleura RGD PMID:10950882 RGD:4889594 NCBI chr 5:79,789,686...79,874,555
Ensembl chr 5:79,789,671...79,874,671
JBrowse link
G Trem1 triggering receptor expressed on myeloid cells 1 treatment IDA RGD PMID:20819512 RGD:127284851 NCBI chr 9:14,727,887...14,743,371
Ensembl chr 9:14,727,976...14,809,447
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  disease 17126
    disease of anatomical entity 16474
      respiratory system disease 2863
        Respiratory Tract Infections 509
          pleural empyema 3
            tuberculous empyema 0
Path 2
Term Annotations click to browse term
  disease 17126
    disease of anatomical entity 16474
      Immune & Inflammatory Diseases 3878
        Inflammation 2315
          Suppuration 67
            Empyema 3
              pleural empyema 3
                tuberculous empyema 0
paths to the root