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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.
Term:extrahepatic bile duct adenocarcinoma
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Accession:DOID:3495 term browser browse the term
Definition:An extrahepatic bile duct carcinoma that derives_from epithelial cells of glandular origin. (DO)
Synonyms:exact_synonym: adenocarcinoma of extrahepatic bile duct;   extrahepatic cholangiocarcinoma;   extrahepatic cholangiocarcinomas
 related_synonym: adenocarcinoma of the extrahepatic bile duct
 xref: NCI:C7975
For additional species annotation, visit the Alliance of Genome Resources.


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extrahepatic bile duct adenocarcinoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BAP1 BRCA1 associated protein 1 disease_progression ISO RGD PMID:25536104 RGD:150340631 NCBI chr 3:52,344,067...52,352,187
Ensembl chr 3:53,573,785...53,581,943 		JBrowse link
G PBRM1 polybromo 1 disease_progression ISO RGD PMID:25536104 RGD:150340631 NCBI chr 3:52,487,083...52,626,418
Ensembl chr 3:53,718,051...53,850,146 		JBrowse link
G RAC1 Rac family small GTPase 1 ISO protein:increased expression:mucosa (human) RGD PMID:21537609 RGD:153350126 NCBI chr 7:7,039,379...7,068,866 JBrowse link
G SLC7A5 solute carrier family 7 member 5 disease_progression ISO RGD PMID:24890221 RGD:151361210 NCBI chr16:68,512,407...68,552,763 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  disease 17996
    disease of cellular proliferation 7240
      Neoplasms by Histologic Type 5050
        cell type cancer 3590
          carcinoma 3058
            adenocarcinoma 1587
              bile duct adenocarcinoma 127
                extrahepatic bile duct adenocarcinoma 4
                  extrahepatic bile duct small cell adenocarcinoma 0
                  papillary extrahepatic bile duct adenocarcinoma 0
Path 2
Term Annotations click to browse term
  disease 17996
    disease of anatomical entity 15260
      gastrointestinal system disease 6469
        Digestive System Neoplasms 3683
          Gastrointestinal Neoplasms 3563
            gastrointestinal system benign neoplasm 215
              hepatobiliary benign neoplasm 167
                biliary tract benign neoplasm 141
                  Bile Duct Neoplasms 138
                    bile duct cancer 136
                      bile duct carcinoma 127
                        bile duct adenocarcinoma 127
                          cholangiocarcinoma 127
                            extrahepatic bile duct carcinoma 6
                              extrahepatic bile duct adenocarcinoma 4
                                extrahepatic bile duct small cell adenocarcinoma 0
                                papillary extrahepatic bile duct adenocarcinoma 0
paths to the root