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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.
Term:extrahepatic bile duct adenocarcinoma
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Accession:DOID:3495 term browser browse the term
Definition:An extrahepatic bile duct carcinoma that derives_from epithelial cells of glandular origin. (DO)
Synonyms:exact_synonym: adenocarcinoma of extrahepatic bile duct;   extrahepatic cholangiocarcinoma;   extrahepatic cholangiocarcinomas
 related_synonym: adenocarcinoma of the extrahepatic bile duct
 xref: NCI:C208025;   NCI:C7975
For additional species annotation, visit the Alliance of Genome Resources.


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extrahepatic bile duct adenocarcinoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bap1 BRCA1 associated deubiquitinase 1 disease_progression ISO RGD PMID:25536104 RGD:150340631 NCBI chr16:6,453,126...6,461,952
Ensembl chr16:6,452,974...6,461,952 		JBrowse link
G Pbrm1 polybromo 1 disease_progression ISO RGD PMID:25536104 RGD:150340631 NCBI chr16:6,219,933...6,319,336
Ensembl chr16:6,219,917...6,319,336 		JBrowse link
G Rac1 Rac family small GTPase 1 ISO protein:increased expression:mucosa (human) RGD PMID:21537609 RGD:153350126 NCBI chr12:16,150,411...16,170,864
Ensembl chr12:16,128,649...16,172,109 		JBrowse link
G Slc7a5 solute carrier family 7 member 5 disease_progression ISO RGD PMID:24890221 RGD:151361210 NCBI chr19:66,843,808...66,872,412
Ensembl chr19:66,843,808...66,872,412 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  disease 19167
    disease of cellular proliferation 7905
      Neoplasms by Histologic Type 5351
        cell type cancer 3786
          carcinoma 3274
            adenocarcinoma 1700
              bile duct adenocarcinoma 139
                extrahepatic bile duct adenocarcinoma 4
                  extrahepatic bile duct small cell adenocarcinoma 0
                  papillary extrahepatic bile duct adenocarcinoma 0
Path 2
Term Annotations click to browse term
  disease 19167
    disease of anatomical entity 18473
      gastrointestinal system disease 7168
        Digestive System Neoplasms 3851
          Gastrointestinal Neoplasms 3731
            gastrointestinal system benign neoplasm 237
              hepatobiliary benign neoplasm 184
                biliary tract benign neoplasm 155
                  Bile Duct Neoplasms 152
                    bile duct cancer 150
                      bile duct carcinoma 139
                        bile duct adenocarcinoma 139
                          cholangiocarcinoma 139
                            extrahepatic bile duct carcinoma 5
                              extrahepatic bile duct adenocarcinoma 4
                                extrahepatic bile duct small cell adenocarcinoma 0
                                papillary extrahepatic bile duct adenocarcinoma 0
paths to the root