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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.
Term:vaccinia
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Accession:DOID:3298 term browser browse the term
Definition:A viral infectious disease that results_in infection, located_in skin, has_material_basis_in Vaccinia virus, which is used as a live vaccine against smallpox. The virus is transmitted_by contact with the vaccination site before it has healed, or transmitted_by fomites that have been contaminated with live virus from the vaccination site. The infection has_symptom rash, has_symptom fever, and has_symptom body aches. (DO)
Synonyms:exact_synonym: Vaccinias;   vaccinia infection;   vaccinia infections;   vaccinia virus infection;   vaccinia virus infections
 primary_id: MESH:D014615
For additional species annotation, visit the Alliance of Genome Resources.


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vaccinia term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eif2ak2 eukaryotic translation initiation factor 2-alpha kinase 2 susceptibility
severity		 ISO RGD PMID:20943971 PMID:11967338 RGD:40902816, RGD:40902818 NCBI chr 6:16,189,000...16,224,972
Ensembl chr 6:16,188,979...16,224,971 		JBrowse link
G Foxp3 forkhead box P3 ISO RGD PMID:20548030 RGD:36947870 NCBI chr  X:14,908,494...14,924,994
Ensembl chr  X:14,908,494...14,923,838 		JBrowse link
G Mavs mitochondrial antiviral signaling protein treatment ISO RGD PMID:26849062 RGD:40903043 NCBI chr 3:118,451,650...118,466,094
Ensembl chr 3:118,451,743...118,466,094 		JBrowse link
G Ripk3 receptor-interacting serine-threonine kinase 3 exacerbates ISO RGD PMID:19524513 RGD:127229939 NCBI chr15:29,283,153...29,292,107
Ensembl chr15:29,283,145...29,292,121 		JBrowse link
G Rnasel ribonuclease L susceptibility
severity		 ISO RGD PMID:20943971 PMID:11967338 RGD:40902816, RGD:40902818 NCBI chr13:65,894,990...65,910,354
Ensembl chr13:65,901,459...65,908,704 		JBrowse link
G Was WASP actin nucleation promoting factor severity ISO RGD PMID:15681416 RGD:38599240 NCBI chr  X:14,405,105...14,413,850
Ensembl chr  X:14,405,124...14,413,849 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  disease 21128
    disease by infectious agent 2211
      viral infectious disease 1677
        DNA Virus Infections 306
          milker's nodule 15
            vaccinia 6
paths to the root