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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.

Term:kidney benign neoplasm
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Accession:DOID:3116 term browser browse the term
Synonyms:exact_synonym: renal and ureteral tumor
 narrow_synonym: Ossifying Renal Tumor of Infancy;   Renal Angiomyoadenomatous Tumor
 xref: EFO:1000111;   EFO:1000409;   EFO:1000507;   NCI:C7514
For additional species annotation, visit the Alliance of Genome Resources.



show annotations for term's descendants           Sort by:
kidney angiomyolipoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mtor mechanistic target of rapamycin kinase treatment ISO associated with Tuberous Sclerosis RGD PMID:23054313 RGD:7245506 NCBI chr 5:158,884,856...158,994,311
Ensembl chr 5:158,884,804...158,994,311
JBrowse link
nephroma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dicer1 dicer 1 ribonuclease III ISO DNA:mutations: : RGD PMID:24481001 RGD:149735348 NCBI chr 6:123,627,529...123,692,278
Ensembl chr 6:123,631,250...123,693,965
JBrowse link
renal adenoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp7b ATPase copper transporting beta IAGP RGD PMID:11509115 RGD:1302456 NCBI chr16:69,952,286...70,024,404
Ensembl chr16:69,951,778...70,023,636
JBrowse link
G Atp7bhts ATPase copper transporting beta; hepatitis IAGP RGD PMID:11509115 RGD:1302456
renal oncocytoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Flcn folliculin ISO CTD Direct Evidence: marker/mechanism CTD PMID:12204536 NCBI chr10:44,588,621...44,607,808
Ensembl chr10:44,588,624...44,607,769
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  disease 21140
    disease of cellular proliferation 7662
      benign neoplasm 2224
        organ system benign neoplasm 1292
          urinary system benign neoplasm 7
            kidney benign neoplasm 7
              childhood multilocular cystic kidney neoplasm 0
              kidney angiomyolipoma + 1
              kidney lipoma 0
              nephrogenic adenofibroma 0
              nephrogenic adenoma + 0
              nephroma + 1
              renal adenoma + 4
              renal oncocytoma + 1
              renal pelvis benign neoplasm + 0
Path 2
Term Annotations click to browse term
  disease 21140
    disease of cellular proliferation 7662
      Neoplasms by Site 7120
        Urogenital Neoplasms 2192
          Urologic Neoplasms 733
            urinary system benign neoplasm 7
              kidney benign neoplasm 7
                childhood multilocular cystic kidney neoplasm 0
                kidney angiomyolipoma + 1
                kidney lipoma 0
                nephrogenic adenofibroma 0
                nephrogenic adenoma + 0
                nephroma + 1
                renal adenoma + 4
                renal oncocytoma + 1
                renal pelvis benign neoplasm + 0
paths to the root