RGD DISEASE ONTOLOGY - ANNOTATIONS
RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.
Term: VACTERL association
Accession: DOID:14679
browse the term
Definition: A syndrome that is characterized by the presence of at least three of the following: vertebral defects, anal atresia, cardiac defects, tracheo-esophageal fistula, renal anomalies, and limb abnormalities. (DO)
Synonyms: exact_synonym: VACTEL association; VACTERL Syndrome; VACTERL/VATER association; VATER Association; Vertebral Anal Tracheoesophageal Esophageal Radial anomalies; vertebral defects, anal atresia, tracheoesophageal fistula with esophageal atresia, and radial dysplasia
related_synonym: VATER syndrome
primary_id: MESH:C536495 ; MESH:C536534
alt_id: OMIM:192350
xref: GARD:5443 ; NCI:C99105
For additional species annotation, visit the
Alliance of Genome Resources .
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CPLANE2
ciliogenesis and planar polarity effector complex subunit 2
ISO
OMIM:192350 | OMIM:276950
MouseDO
NCBI chr 1:15,368,318...15,373,815
Ensembl chr 1:16,362,655...16,368,063
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DYNC2H1
dynein cytoplasmic 2 heavy chain 1
ISO
OMIM:192350 | OMIM:276950
MouseDO
NCBI chr11:98,051,788...98,425,676
Ensembl chr11:101,536,471...101,909,194
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FANCL
FA complementation group L
ISO
ClinVar Annotator: match by term: VATER association
ClinVar
PMID:19405097 PMID:23613520 PMID:25754594 PMID:28492532
NCBI chr2A:58,270,620...58,353,001
Ensembl chr2A:59,418,265...59,499,496
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FN1
fibronectin 1
ISO
protein:increased expression:embryo
RGD
PMID:14986037
RGD:7205466
NCBI chr2B:102,623,568...102,698,747
Ensembl chr2B:221,208,431...221,284,003
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FOXF1
forkhead box F1
ISO
ClinVar Annotator: match by term: VATER association
ClinVar
PMID:2629409 PMID:26294094
NCBI chr16:67,183,416...67,188,211
Ensembl chr16:86,516,119...86,519,949
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GLI2
GLI family zinc finger 2
ISO
RGD
PMID:11172440
RGD:155791680
NCBI chr2B:7,665,403...7,922,840
Ensembl chr2B:121,303,831...121,497,442
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GLI3
GLI family zinc finger 3
ISO
RGD
PMID:11172440
RGD:155791680
NCBI chr 7:42,004,965...42,280,772
Ensembl chr 7:42,056,565...42,322,865
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HOXD13
homeobox D13
ISO
ClinVar Annotator: match by term: VACTERL association
ClinVar
PMID:19006232
NCBI chr2B:63,372,517...63,375,731
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IFT172
intraflagellar transport 172
ISO
OMIM:192350 | OMIM:276950
MouseDO
NCBI chr2A:27,448,139...27,492,302
Ensembl chr2A:27,536,534...27,580,406
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NOTCH2
notch receptor 2
ISO
ClinVar Annotator: match by term: VATER association
ClinVar
PMID:25741868 PMID:28492532
NCBI chr 1:82,457,829...82,615,142
Ensembl chr 1:117,538,243...117,612,840
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PCSK5
proprotein convertase subtilisin/kexin type 5
ISO
CTD Direct Evidence: marker/mechanism OMIM:192350 | OMIM:276950 DNA:mutation:exon:p.C470R(mouse)
CTD MouseDO RGD
PMID:18519639
RGD:11556208
NCBI chr 9:48,480,607...48,943,331
Ensembl chr 9:74,745,761...75,220,502
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QSOX1
quiescin sulfhydryl oxidase 1
ISO
OMIM:192350 | OMIM:276950
MouseDO
NCBI chr 1:155,641,793...155,687,231
Ensembl chr 1:159,313,245...159,358,672
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SHH
sonic hedgehog signaling molecule
ISO
RGD
PMID:12632369
RGD:12801426
NCBI chr 7:147,400,112...147,414,036
Ensembl chr 7:159,114,666...159,126,651
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TBC1D32
TBC1 domain family member 32
ISO
OMIM:192350 | OMIM:276950
MouseDO
NCBI chr 6:118,884,928...119,139,138
Ensembl chr 6:123,022,008...123,273,810
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TRAP1
TNF receptor associated protein 1
ISO
ClinVar Annotator: match by term: VACTERL association
ClinVar
PMID:25741868
NCBI chr16:2,578,483...2,637,996
Ensembl chr16:3,753,799...3,786,429
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BAZ1A
bromodomain adjacent to zinc finger domain 1A
ISO
ClinVar Annotator: match by term: VATER/VACTERL association with CNS malformations
ClinVar
NCBI chr14:15,510,881...15,632,516
Ensembl chr14:33,699,424...33,804,473
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FANCB
FA complementation group B
ISO
ClinVar Annotator: match by term: VACTERL ASSOCIATION, X-LINKED | ClinVar Annotator: match by term: VACTERL association, X-linked, with or without hydrocephalus | ClinVar Annotator: match by term: VACTERL-H | ClinVar Annotator: match by term: VACTERL-H, X-LINKED | ClinVar Annotator: match by term: X-linked VACTERL-H syndrome
ClinVar
PMID:24033266 PMID:25741868 PMID:28492532 PMID:32546565
NCBI chr X:7,470,574...7,500,958
Ensembl chr X:14,752,934...14,781,817
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FANCL
FA complementation group L
ISO
ClinVar Annotator: match by term: VACTERL association, X-linked, with or without hydrocephalus
ClinVar
PMID:19405097 PMID:23613520 PMID:25741868 PMID:25754594 PMID:28492532 PMID:29625052 More...
NCBI chr2A:58,270,620...58,353,001
Ensembl chr2A:59,418,265...59,499,496
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PTEN
phosphatase and tensin homolog
ISO
ClinVar Annotator: match by term: VACTERL-H | ClinVar Annotator: match by term: Vater association with macrocephaly and ventriculomegaly
ClinVar
PMID:10866302 PMID:11748304 PMID:17526800 PMID:17526801 PMID:17942903 PMID:21828076 PMID:22628360 PMID:24778394 PMID:25157968 PMID:25669429 PMID:25741868 PMID:28475857 PMID:28492532 PMID:28526761 PMID:29706350 PMID:29874181 More...
NCBI chr10:84,587,841...84,689,043
Ensembl chr10:88,093,539...88,194,605
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SALL1
spalt like transcription factor 1
ISO
ClinVar Annotator: match by term: VACTERL-H
ClinVar
PMID:25741868
NCBI chr16:31,396,399...31,412,753
Ensembl chr16:50,274,090...50,284,819
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ZIC3
Zic family member 3
ISO
ClinVar Annotator: match by term: VACTERL association with hydrocephaly, X-linked | ClinVar Annotator: match by term: VACTERL association, X-linked, with or without hydrocephalus
OMIM ClinVar
PMID:2629409 PMID:10980576 PMID:14681828 PMID:17764085 PMID:23427188 PMID:24033266 PMID:24123890 PMID:25741868 PMID:26294094 PMID:28492532 PMID:32753700 More...
NCBI chr X:126,691,534...126,705,788
Ensembl chr X:136,954,024...136,967,819
Term paths to the root one shortest all shortest one longest all longest one shortest and longest all