RGD DISEASE ONTOLOGY - ANNOTATIONS
RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.
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IL10
interleukin 10
ISO
DNA:SNP:promoter:rs6703630 (human)
RGD
PMID:21357402
RGD:7364844
NCBI chr 7:5,933,285...5,937,057
Ensembl chr 7:5,933,285...5,937,057
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NHEJ1
non-homologous end joining factor 1
IAGP
Choroidal hypoplasia, NHEJ1-related
OMIA
PMID:120471 PMID:480920 PMID:4631461 PMID:4959239 PMID:4980211 PMID:4980212 PMID:4992161 PMID:4994718 PMID:5884039 PMID:5949333 PMID:6777963 PMID:6787732 PMID:6812274 PMID:7147637 PMID:9800301 PMID:10701187 PMID:10879403 PMID:11327669 PMID:12809679 PMID:14268789 PMID:14437837 PMID:16178848 PMID:17204124 PMID:17916641 PMID:19946851 PMID:20807925 PMID:22051190 PMID:22065099 PMID:24939474 PMID:26346323 PMID:26732749 PMID:27387721 PMID:28702949 PMID:29111596 PMID:29708978 PMID:30657768 PMID:31684941 PMID:34544496 PMID:35092136 PMID:35127102 PMID:35369581 PMID:36848350 PMID:38003037 More...
NCBI chr37:25,637,214...25,719,241
Ensembl chr37:25,637,601...25,715,372
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PRPH2
peripherin 2
ISO
ClinVar Annotator: match by term: Choroidal Dystrophy
ClinVar
PMID:25741868 PMID:28492532 PMID:32531846
NCBI chr12:11,299,236...11,316,175
Ensembl chr12:11,299,236...11,316,175
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BEST1
bestrophin 1
ISO
ClinVar Annotator: match by term: Autosomal dominant vitreoretinochoroidopathy | ClinVar Annotator: match by term: Microcornea, rod-cone dystrophy, cataract, and posterior staphyloma 2 | ClinVar Annotator: match by term: VITREORETINOCHOROIDOPATHY, AUTOSOMAL DOMINANT, WITH NANOPHTHALMOS | ClinVar Annotator: match by term: VRCP autosomal dominant
OMIM ClinVar
PMID:2133066 PMID:9536098 PMID:10737974 PMID:10788642 PMID:10798642 PMID:10854112 PMID:11585313 PMID:12543751 PMID:13534955 PMID:14615048 PMID:15452077 PMID:17065513 PMID:17576681 PMID:18289629 PMID:18611979 PMID:18985398 PMID:19853238 PMID:20927214 PMID:21072067 PMID:21273940 PMID:21330666 PMID:21436265 PMID:21809908 PMID:21825197 PMID:23213274 PMID:23591405 PMID:24560797 PMID:25489231 PMID:25741868 PMID:25999674 PMID:26201355 PMID:26720466 PMID:26771239 PMID:28225368 PMID:28492532 PMID:28559085 PMID:28687848 PMID:29215532 PMID:29555955 PMID:29668979 PMID:29844330 PMID:30498755 PMID:30593719 PMID:30718709 PMID:31254423 PMID:31263784 PMID:31429209 PMID:31519547 PMID:31570112 PMID:31589614 PMID:31766397 PMID:32100970 PMID:32141364 PMID:32239196 PMID:32531858 PMID:32883240 PMID:33090715 PMID:33302512 PMID:33546218 PMID:33691693 PMID:34061021 PMID:34327816 PMID:34373720 PMID:35119454 PMID:35885980 PMID:35973442 PMID:36284460 PMID:36378562 PMID:36460718 PMID:36512348 More...
NCBI chr18:54,468,844...54,483,565
Ensembl chr18:54,468,844...54,480,311
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FTH1
ferritin heavy chain 1
ISO
ClinVar Annotator: match by term: Autosomal dominant vitreoretinochoroidopathy | ClinVar Annotator: match by term: VITREORETINOCHOROIDOPATHY, AUTOSOMAL DOMINANT, WITH NANOPHTHALMOS | ClinVar Annotator: match by term: VRCP autosomal dominant
ClinVar
PMID:2133066 PMID:10788642 PMID:10798642 PMID:14615048 PMID:18985398 PMID:20927214 PMID:21273940 PMID:21330666 PMID:21809908 PMID:21825197 PMID:23591405 PMID:24560797 PMID:25489231 PMID:25741868 PMID:26201355 PMID:26720466 PMID:28492532 PMID:28559085 PMID:28687848 PMID:29555955 PMID:29668979 PMID:30498755 PMID:30593719 PMID:31429209 PMID:31519547 PMID:31766397 PMID:32100970 PMID:32141364 PMID:32883240 PMID:33090715 PMID:33302512 PMID:33546218 PMID:33691693 PMID:34327816 PMID:34373720 PMID:35885980 PMID:35973442 PMID:36284460 PMID:36378562 More...
NCBI chr18:54,466,167...54,468,733
Ensembl chr18:54,466,023...54,468,732
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DLA88
MHC class I DLA-88
ISO
DNA:polymorphism:cds:HLA-B12 (human)
RGD
PMID:3341436
RGD:7365121
NCBI chr12:892,442...895,691
Ensembl chr12:892,388...1,021,690
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ERAP2
endoplasmic reticulum aminopeptidase 2
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:36013011
NCBI chr 3:12,780,084...12,819,795
Ensembl chr 3:12,781,849...12,817,025
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IL2
interleukin 2
ISO
protein:increased expression:aqueous humor
RGD
PMID:21570674
RGD:5147908
NCBI chr19:17,750,780...17,756,394
Ensembl chr19:17,750,780...17,756,394
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PRPH2
peripherin 2
ISO
ClinVar Annotator: match by term: Choroidal dystrophy, central areolar 2 | ClinVar Annotator: match by term: MACULAR DYSTROPHY, PROGRESSIVE
OMIM ClinVar
PMID:279751 PMID:3441139 PMID:7493155 PMID:7825692 PMID:7880786 PMID:8015786 PMID:8111389 PMID:8302543 PMID:8485575 PMID:8485576 PMID:8644804 PMID:8675410 PMID:8747448 PMID:8994365 PMID:9010868 PMID:9279751 PMID:9331261 PMID:9338584 PMID:9443872 PMID:9810570 PMID:10193525 PMID:10532447 PMID:10627133 PMID:10800708 PMID:11139241 PMID:11139263 PMID:11801511 PMID:12042139 PMID:14510799 PMID:14557183 PMID:15254014 PMID:16019073 PMID:16767206 PMID:16799052 PMID:16832026 PMID:16885924 PMID:16916875 PMID:17504850 PMID:17653047 PMID:17698758 PMID:18055786 PMID:18310263 PMID:19038374 PMID:19243827 PMID:19262438 PMID:19279306 PMID:20213611 PMID:20335603 PMID:20640437 PMID:21071739 PMID:21405999 PMID:22003107 PMID:22183351 PMID:22334370 PMID:22863181 PMID:23105016 PMID:23950152 PMID:24463884 PMID:24608669 PMID:24629188 PMID:25082885 PMID:25268133 PMID:25412400 PMID:25447119 PMID:25474345 PMID:25675413 PMID:25741868 PMID:25803555 PMID:25999674 PMID:26061163 PMID:26103963 PMID:26161267 PMID:26321861 PMID:26355662 PMID:26667666 PMID:26796962 PMID:27365499 PMID:27813578 PMID:27884173 PMID:27977834 PMID:28041643 PMID:28076437 PMID:28224992 PMID:28492530 PMID:28492532 PMID:28559085 PMID:28838317 PMID:29155698 PMID:29186038 PMID:29343940 PMID:29555955 PMID:29847639 PMID:30215852 PMID:30718709 PMID:30726412 PMID:30910914 PMID:31213501 PMID:31429209 PMID:31456290 PMID:31574917 PMID:31589614 PMID:31618092 PMID:31914632 PMID:31964843 PMID:32036094 PMID:32037395 PMID:32531846 PMID:32531858 PMID:32581362 PMID:32660024 PMID:32717343 PMID:32942919 PMID:33369172 PMID:33546218 PMID:33691693 PMID:33846575 PMID:33925984 PMID:34240658 PMID:34327195 PMID:34411390 PMID:34647987 PMID:34828423 PMID:34906036 PMID:35119454 PMID:35260635 PMID:35656873 PMID:36010202 PMID:36284460 PMID:36460718 PMID:36609934 PMID:36672815 PMID:36819107 PMID:36909829 PMID:37047703 More...
NCBI chr12:11,299,236...11,316,175
Ensembl chr12:11,299,236...11,316,175
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COL2A1
collagen type II alpha 1 chain
ISO
associated with Toxoplasmosis, Congenital;DNA:snp:intron:IVS2-218 (rs1793958) (human)
RGD
PMID:18523590
RGD:8657355
NCBI chr27:6,756,994...6,787,733
Ensembl chr27:6,756,994...6,787,733
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ADIPOQ
adiponectin, C1Q and collagen domain containing
treatment
ISO
RGD
PMID:16689928 PMID:17466298 PMID:22633972
RGD:2289282 RGD:8694464 RGD:8695931
NCBI chr34:19,398,310...19,410,519
Ensembl chr34:19,354,825...19,409,844
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AOC3
amine oxidase copper containing 3
ISO
RGD
PMID:18436961
RGD:2313908
NCBI chr 9:20,158,581...20,179,773
Ensembl chr 9:20,157,410...20,241,376
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BMP4
bone morphogenetic protein 4
ISO
RGD
PMID:21411747 PMID:22392094
RGD:8699493 RGD:8699501
NCBI chr 8:29,997,563...30,254,307
Ensembl chr 8:29,997,569...30,004,557
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C5
complement C5
ISO
RGD
PMID:16849499
RGD:7411733
NCBI chr11:73,953,727...74,029,919
Ensembl chr11:73,953,727...74,029,851
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CCL2
C-C motif chemokine ligand 2
treatment
ISO
RGD
PMID:17389519
RGD:8548832
NCBI chr 9:39,008,187...39,009,932
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CCR2
C-C motif chemokine receptor 2
ISO
RGD
PMID:22205983
RGD:8657364
NCBI chr20:42,305,344...42,313,258
Ensembl chr20:42,307,580...42,308,698
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CCR3
C-C motif chemokine receptor 3
ISO
associated with Macular Degeneration
RGD
PMID:19525930
RGD:6893454
NCBI chr20:42,382,380...42,398,449
Ensembl chr20:42,383,135...42,384,217
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CFB
complement factor B
ISO
RGD
PMID:16849499
RGD:7411733
NCBI chr12:1,400,143...1,406,267
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CFH
complement factor H
treatment
ISO
associated with myopia;DNA:SNP: :rs1061170(human) DNA:SNPs:cds:p.Y402H,I62V(human)
RGD
PMID:22536038 PMID:22678500 PMID:23258212
RGD:7364943 RGD:7365030 RGD:7365031
NCBI chr38:2,878,677...2,956,226
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DLA88
MHC class I DLA-88
susceptibility
ISO
associated with Macular Degeneration; DNA:polymorphisms:cds:HLA-B27 (human)
RGD
PMID:19728932
RGD:7365097
NCBI chr12:892,442...895,691
Ensembl chr12:892,388...1,021,690
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DLL4
delta like canonical Notch ligand 4
treatment
ISO
RGD
PMID:21063852
RGD:12859045
NCBI chr30:8,059,463...8,068,742
Ensembl chr30:8,059,512...8,067,940
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F7
coagulation factor VII
ISO
mouse protein in a rat model
RGD
PMID:19357351
RGD:2312299
NCBI chr22:60,572,459...60,582,743
Ensembl chr22:60,571,822...60,597,024
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FGF2
fibroblast growth factor 2
treatment
ISO
RGD
PMID:10359334
RGD:8655568
NCBI chr19:17,403,288...17,463,143
Ensembl chr19:16,994,661...17,463,151
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FLT1
fms related receptor tyrosine kinase 1
treatment
ISO
RGD
PMID:10849558 PMID:23804076 PMID:23977149
RGD:10402112 RGD:10402113 RGD:10402115
NCBI chr25:11,231,958...11,410,379
Ensembl chr25:11,231,737...11,407,621
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GLI1
GLI family zinc finger 1
treatment
ISO
RGD
PMID:21063852
RGD:12859045
NCBI chr10:1,565,306...1,575,971
Ensembl chr10:1,565,244...1,575,982
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HGF
hepatocyte growth factor
ISO
protein:increased expression:choroidal tissue:
RGD
PMID:19013152
RGD:8548599
NCBI chr18:21,329,688...21,410,257
Ensembl chr18:21,332,817...21,410,263
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HIF1A
hypoxia inducible factor 1 subunit alpha
treatment
ISO
RGD
PMID:21063852
RGD:12859045
NCBI chr 8:36,614,045...36,656,692
Ensembl chr 8:36,614,045...36,656,692
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HTRA1
HtrA serine peptidase 1
no_association
ISO
DNA:snp:promoter:g.-625G>A (rs11200638) (human) human gene in mouse model associated with Myopia; DNA:snp:promoter:g.-625G>A (rs11200638) (human)
RGD
PMID:18682806 PMID:19680273 PMID:21844367
RGD:7394694 RGD:7394720 RGD:7394749
NCBI chr28:32,133,779...32,157,835
Ensembl chr28:32,132,547...32,157,409
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ICAM1
intercellular adhesion molecule 1
ISO
mRNA:increased expression:retina, choroid, sclera (rat)
RGD
PMID:20497436
RGD:4145405
NCBI chr20:50,818,715...50,827,914
Ensembl chr20:50,818,715...50,827,914
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IGF1R
insulin like growth factor 1 receptor
treatment
ISO
RGD
PMID:19032681
RGD:10045869
NCBI chr 3:41,795,337...42,096,255
Ensembl chr 3:41,794,623...42,090,387
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IKBKB
inhibitor of nuclear factor kappa B kinase subunit beta
treatment
ISO
RGD
PMID:24489934
RGD:10045942
NCBI chr16:23,359,551...23,419,114
Ensembl chr16:23,359,813...23,419,075
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IL10
interleukin 10
treatment
ISO
RGD
PMID:16903779 PMID:22802947
RGD:7364853 RGD:7365068
NCBI chr 7:5,933,285...5,937,057
Ensembl chr 7:5,933,285...5,937,057
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IL2
interleukin 2
treatment
ISO
associated with Macular Degeneration;protein:decreased expression:aqueous humor:
RGD
PMID:19262441
RGD:10047086
NCBI chr19:17,750,780...17,756,394
Ensembl chr19:17,750,780...17,756,394
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ITGAV
integrin subunit alpha V
ISO
RGD
PMID:15287373
RGD:1582458
NCBI chr36:28,815,215...28,890,569
Ensembl chr36:28,804,013...28,887,430
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JAM3
junctional adhesion molecule 3
treatment
ISO
RGD
PMID:22323465
RGD:7488935
NCBI chr 5:1,082,619...1,165,188
Ensembl chr 5:1,084,560...1,165,121
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KDR
kinase insert domain receptor
treatment
ISO
RGD
PMID:12937991 PMID:15249365 PMID:18436847 PMID:19085383 PMID:22997228
RGD:8549713 RGD:8549716 RGD:8549738 RGD:8549741 RGD:8549747
NCBI chr13:47,442,861...47,484,574
Ensembl chr13:47,442,764...47,485,042
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LEP
leptin
ISO
associated with Metabolic Syndrome X;mRNA:increased expression:retina (rat)
RGD
PMID:25380250
RGD:10053625
NCBI chr14:8,115,396...8,130,946
Ensembl chr14:8,116,122...8,131,395
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LOXL1
lysyl oxidase like 1
ISO
RGD
PMID:18296663
RGD:7394725
NCBI chr30:37,191,201...37,204,163
Ensembl chr30:37,183,128...37,204,058
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MMP13
matrix metallopeptidase 13
ISO
RGD
PMID:20700625
RGD:10043118
NCBI chr 5:28,793,568...28,864,832
Ensembl chr 5:28,850,522...28,864,121
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MMP2
matrix metallopeptidase 2
treatment
ISO
RGD
PMID:21666238 PMID:25314292
RGD:13207327 RGD:8657062
NCBI chr 2:60,471,092...60,492,991
Ensembl chr 2:60,471,257...60,494,113
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MMP9
matrix metallopeptidase 9
treatment
ISO
protein:increased expression:plasma
RGD
PMID:12368198 PMID:17304258 PMID:25314292
RGD:13207327 RGD:8547840 RGD:8657061
NCBI chr24:33,274,260...33,281,116
Ensembl chr24:33,274,268...33,281,293
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PTCH1
patched 1
ISO
mRNA,protein:increased expression:choroid:
RGD
PMID:21063852
RGD:12859045
NCBI chr 1:71,246,750...71,309,036
Ensembl chr 1:71,238,195...71,305,662
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SERPINF1
serpin family F member 1
treatment
ISO
human protein in a rat model protein:increased expression:aqueous humor (human) human gene in a mouse model
RGD
PMID:11424092 PMID:12037010 PMID:15312607 PMID:16490490 PMID:19778186 PMID:19850839 More...
RGD:2312356 RGD:27226711 RGD:28867245 RGD:8554866 RGD:8554883 RGD:8655557
NCBI chr 9:45,891,368...45,902,768
Ensembl chr 9:45,891,410...45,902,765
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SOD1
superoxide dismutase 1
ISO
RGD
PMID:16844785
RGD:1581207
NCBI chr31:26,540,291...26,544,212
Ensembl chr31:26,486,274...26,662,815
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STAT3
signal transducer and activator of transcription 3
treatment
ISO
associated with Diabetes Mellitus, Experimental
RGD
PMID:17525280 PMID:23094067
RGD:10403057 RGD:8694307
NCBI chr 9:20,539,660...20,614,631
Ensembl chr 9:20,539,697...20,612,672
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TLR2
toll like receptor 2
ISO
associated with Chlamydophila Infections;
RGD
PMID:20393111
RGD:8552825
NCBI chr15:51,454,557...51,465,429
Ensembl chr15:51,454,695...51,465,241
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TYR
tyrosinase
ISO
ClinVar Annotator: match by term: Choroidal neovascularization
ClinVar
PMID:666627 PMID:1429711 PMID:1820207 PMID:7704033 PMID:7955413 PMID:9158138 PMID:10766867 PMID:17952075 PMID:18326704 PMID:18488027 PMID:18488028 PMID:18925668 PMID:19208379 PMID:19533789 PMID:20301345 PMID:21541274 PMID:23504663 PMID:25216246 PMID:25741868 PMID:28378818 PMID:28492532 PMID:28976636 PMID:30472657 PMID:31077556 PMID:35803923 More...
NCBI chr21:10,799,940...10,894,187
Ensembl chr21:10,799,940...10,894,191
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VEGFA
vascular endothelial growth factor A
treatment
ISO
CTD Direct Evidence: marker/mechanism mRNA,protein:increased expression:choroidal tissue,retina:
CTD RGD
PMID:16680105 PMID:16723717 PMID:19013152 PMID:20237252
RGD:7483614 RGD:8548459 RGD:8548599
NCBI chr12:12,209,032...12,224,978
Ensembl chr12:12,208,231...12,224,965
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VEGFB
vascular endothelial growth factor B
ISO
RGD
PMID:19369214
RGD:2314323
NCBI chr18:52,821,348...52,824,649
Ensembl chr18:52,821,365...52,824,655
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DLL4
delta like canonical Notch ligand 4
treatment
ISO
RGD
PMID:21526177
RGD:155663484
NCBI chr30:8,059,463...8,068,742
Ensembl chr30:8,059,512...8,067,940
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SERPINE1
serpin family E member 1
severity treatment
ISO
human gene in mouse model mRNA:increased expression:retina (mouse)
RGD
PMID:11292663 PMID:12766088 PMID:26610445
RGD:11073722 RGD:8547735 RGD:8547737
NCBI chr 6:8,719,547...8,727,160
Ensembl chr 6:8,720,825...8,726,301
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SMO
smoothened, frizzled class receptor
treatment
ISO
RGD
PMID:21063852
RGD:12859045
NCBI chr14:7,518,871...7,527,703
Ensembl chr14:7,518,856...7,528,033
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EYS
eyes shut homolog
ISO
ClinVar Annotator: match by term: Central areolar choroidal dystrophy
ClinVar
PMID:9536098 PMID:17576681 PMID:25741868 PMID:28492532 PMID:32531858
NCBI chr12:27,184,500...28,708,705
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GUCY2D
guanylate cyclase 2D, retinal
ISO
ClinVar Annotator: match by term: Choroidal dystrophy, central areolar, 1
OMIM ClinVar
PMID:8554074 PMID:8733141 PMID:8944027 PMID:9536098 PMID:9618177 PMID:9683616 PMID:10766140 PMID:10951519 PMID:11035546 PMID:11115851 PMID:11328726 PMID:11565546 PMID:11709018 PMID:12552567 PMID:15024725 PMID:15111605 PMID:15175914 PMID:16505055 PMID:17576681 PMID:17724218 PMID:17964524 PMID:18055816 PMID:18055820 PMID:18487367 PMID:20050595 PMID:20683928 PMID:20981092 PMID:22183351 PMID:22695961 PMID:23035049 PMID:23424971 PMID:24033266 PMID:24875811 PMID:25477517 PMID:25741868 PMID:26253563 PMID:26298565 PMID:26626312 PMID:26747767 PMID:27884173 PMID:28492532 PMID:28559085 PMID:29061346 PMID:29178642 PMID:29555955 PMID:29559409 PMID:30588428 PMID:30718709 PMID:31429209 PMID:31456290 PMID:31589614 PMID:31816670 PMID:31964843 PMID:32531858 PMID:32811265 PMID:32821499 PMID:32865313 PMID:33109612 PMID:33369172 PMID:33546218 PMID:33749171 PMID:34008892 PMID:34048777 PMID:34426522 PMID:34758253 PMID:35119454 PMID:35260635 PMID:35836572 PMID:36284460 PMID:36369640 PMID:36460718 PMID:36819107 More...
NCBI chr 5:32,844,033...32,859,263
Ensembl chr 5:32,844,033...32,857,687
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PRPH2
peripherin 2
ISO
ClinVar Annotator: match by term: Central areolar choroidal dystrophy
ClinVar
PMID:25741868
NCBI chr12:11,299,236...11,316,175
Ensembl chr12:11,299,236...11,316,175
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TTLL5
tubulin tyrosine ligase like 5
ISO
ClinVar Annotator: match by term: Central areolar choroidal dystrophy
ClinVar
PMID:25741868
NCBI chr 8:48,651,766...48,920,733
Ensembl chr 8:48,651,814...48,920,039
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CHM
CHM Rab escort protein
ISO
ClinVar Annotator: match by term: CHM-related condition | ClinVar Annotator: match by term: Choroideremia | ClinVar Annotator: match by term: Choroideremia, Salla type
OMIM ClinVar
PMID:1044764 PMID:1302003 PMID:1598901 PMID:7981670 PMID:7981671 PMID:8477262 PMID:8832720 PMID:9067750 PMID:9175730 PMID:10420196 PMID:10447648 PMID:11139690 PMID:12203991 PMID:12827496 PMID:16087855 PMID:16199547 PMID:16936131 PMID:18766988 PMID:19422966 PMID:19427510 PMID:21905166 PMID:22957832 PMID:23811034 PMID:25525159 PMID:25741868 PMID:25744334 PMID:25912515 PMID:26133251 PMID:27247961 PMID:27596865 PMID:28041643 PMID:28098911 PMID:28492532 PMID:28559085 PMID:28752371 PMID:29045269 PMID:29555028 PMID:29625443 PMID:29847639 PMID:30297895 PMID:30541579 PMID:30689859 PMID:30718709 PMID:30995293 PMID:31054281 PMID:31144483 PMID:31416074 PMID:31456290 PMID:31852928 PMID:31922496 PMID:32097478 PMID:32364220 PMID:32487042 PMID:32531858 PMID:32985515 PMID:33090715 PMID:33110609 PMID:33394956 PMID:33691693 PMID:33749171 PMID:36284460 PMID:36460718 PMID:36909829 More...
NCBI chr X:66,636,003...66,880,256
Ensembl chr X:66,639,095...66,880,209
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PRPH2
peripherin 2
ISO
ClinVar Annotator: match by term: Progressive tapetochoroidal dystrophy
ClinVar
PMID:9536098 PMID:11139241 PMID:11704030 PMID:16113362 PMID:16799052 PMID:17576681 PMID:23950152 PMID:25082885 PMID:25675413 PMID:25741868 PMID:26842753 PMID:28492532 PMID:28559085 PMID:32531846 More...
NCBI chr12:11,299,236...11,316,175
Ensembl chr12:11,299,236...11,316,175
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IFNG
interferon gamma
ISO
RGD
PMID:10227812
RGD:8157614
NCBI chr10:10,406,866...10,411,698
Ensembl chr10:10,406,867...10,411,698
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NKX1-2
NK1 homeobox 2
ISO
ClinVar Annotator: match by term: Ornithine aminotransferase deficiency
ClinVar
PMID:1737786 PMID:23076989 PMID:28492532
NCBI chr28:33,806,298...33,811,258
Ensembl chr28:33,806,292...33,811,458
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OAT
ornithine aminotransferase
ISO
ClinVar Annotator: match by term: Ornithine aminotransferase deficiency
OMIM ClinVar
PMID:1301936 PMID:1427882 PMID:1487247 PMID:1609808 PMID:1612597 PMID:1618792 PMID:1737786 PMID:1992472 PMID:2220818 PMID:2276738 PMID:2492100 PMID:2565038 PMID:2793865 PMID:2916581 PMID:3170546 PMID:3196484 PMID:3339136 PMID:3375240 PMID:3417397 PMID:7668253 PMID:7887415 PMID:8125717 PMID:8281144 PMID:8430317 PMID:8670789 PMID:9536098 PMID:10617919 PMID:11297489 PMID:11831916 PMID:12221166 PMID:15750329 PMID:16151897 PMID:16199547 PMID:17576681 PMID:21678528 PMID:22182799 PMID:22674428 PMID:23076989 PMID:24082780 PMID:24429551 PMID:25525159 PMID:25640679 PMID:25741868 PMID:26259030 PMID:27037922 PMID:27978498 PMID:28181551 PMID:28341476 PMID:28388263 PMID:28468868 PMID:28492532 PMID:28559085 PMID:29654911 PMID:29757052 PMID:30094188 PMID:30366948 PMID:30957963 PMID:31456290 PMID:31589614 PMID:31964843 PMID:32531858 PMID:33068755 PMID:33090715 PMID:34395527 PMID:36834788 PMID:36909829 PMID:37667371 More...
NCBI chr28:33,763,661...33,788,817
Ensembl chr28:33,758,473...33,788,759
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RIMS1
regulating synaptic membrane exocytosis 1
ISO
ClinVar Annotator: match by term: Ornithine aminotransferase deficiency
ClinVar
PMID:16199547 PMID:25741868 PMID:28492532 PMID:32531858
NCBI chr12:34,473,974...34,661,893
Ensembl chr12:34,474,033...34,659,410
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TUBGCP6
tubulin gamma complex component 6
ISO
ClinVar Annotator: match by term: Microcephaly and chorioretinopathy with or without intellectual disability
ClinVar
PMID:25344692 PMID:25741868 PMID:28492532
NCBI chr10:17,023,609...17,025,956
Ensembl chr10:17,006,770...17,025,105 Ensembl chr10:17,006,770...17,025,105
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KIF11
kinesin family member 11
ISO
ClinVar Annotator: match by term: Microcephaly and chorioretinopathy, autosomal recessive, 1
ClinVar
PMID:25741868
NCBI chr28:6,982,296...7,034,380
Ensembl chr28:6,982,146...7,033,104
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PLK4
polo like kinase 4
ISO
CTD Direct Evidence: marker/mechanism
CTD
NCBI chr19:13,041,739...13,060,300
Ensembl chr19:13,041,742...13,060,072
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TP53BP1
tumor protein p53 binding protein 1
ISO
ClinVar Annotator: match by term: Microcephaly with chorioretinopathy, autosomal recessive
ClinVar
PMID:24033266 PMID:25741868 PMID:25817018 PMID:28492532 PMID:35418825
NCBI chr30:10,263,650...10,362,646
Ensembl chr30:10,263,650...10,336,134
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TUBGCP4
tubulin gamma complex component 4
ISO
ClinVar Annotator: match by term: Microcephaly with chorioretinopathy, autosomal recessive
ClinVar
PMID:24033266 PMID:25741868 PMID:25817018 PMID:28492532 PMID:35418825
NCBI chr30:10,226,558...10,262,805
Ensembl chr30:10,225,952...10,262,804
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TUBGCP6
tubulin gamma complex component 6
ISO
ClinVar Annotator: match by term: Microcephaly and chorioretinopathy 1 | ClinVar Annotator: match by term: TUBGCP6-related condition
OMIM ClinVar
PMID:5936364 PMID:9536098 PMID:17576681 PMID:22279524 PMID:25344692 PMID:25741868 PMID:28492532 PMID:31077665 PMID:36307859 More...
NCBI chr10:17,023,609...17,025,956
Ensembl chr10:17,006,770...17,025,105 Ensembl chr10:17,006,770...17,025,105
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PLK4
polo like kinase 4
ISO
ClinVar Annotator: match by term: Microcephaly and chorioretinopathy 2 | ClinVar Annotator: match by term: PLK4-related condition
OMIM ClinVar
PMID:9536098 PMID:17576681 PMID:25320347 PMID:25344692 PMID:25741868 PMID:28492532 PMID:30842647 More...
NCBI chr19:13,041,739...13,060,300
Ensembl chr19:13,041,742...13,060,072
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TP53BP1
tumor protein p53 binding protein 1
ISO
ClinVar Annotator: match by term: Microcephaly and chorioretinopathy 3 | ClinVar Annotator: match by term: TUBGCP4-related condition
ClinVar
PMID:24033266 PMID:25741868 PMID:25817018 PMID:28492532 PMID:35418825
NCBI chr30:10,263,650...10,362,646
Ensembl chr30:10,263,650...10,336,134
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TUBGCP4
tubulin gamma complex component 4
ISO
ClinVar Annotator: match by term: Microcephaly and chorioretinopathy 3 | ClinVar Annotator: match by term: TUBGCP4-related condition
OMIM ClinVar
PMID:16199547 PMID:24033266 PMID:25741868 PMID:25817018 PMID:28492532 PMID:35418825 More...
NCBI chr30:10,226,558...10,262,805
Ensembl chr30:10,225,952...10,262,804
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CFB
complement factor B
no_association
ISO
DNA:missense mutations:cds:p.L9H, p.R32Q (rs4151667, rs641153) (human)
RGD
PMID:19001225
RGD:7411728
NCBI chr12:1,400,143...1,406,267
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CFH
complement factor H
ISO
DNA:SNPs, missense mutation:introns, cds:multiple
RGD
PMID:19001225
RGD:7411728
NCBI chr38:2,878,677...2,956,226
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PRPH2
peripherin 2
ISO
OMIM:613105
MouseDO
NCBI chr12:11,299,236...11,316,175
Ensembl chr12:11,299,236...11,316,175
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C2
complement C2
susceptibility
ISO
DNA:SNP:intron:c.1360+62G>T (rs547154) (human)
RGD
PMID:22232432
RGD:7411694
NCBI chr12:1,363,656...1,399,732
Ensembl chr12:1,363,803...1,399,728
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CFB
complement factor B
susceptibility
ISO
DNA:snp:intron:c.1169-69T>C (rs541862) (human)
RGD
PMID:22232432
RGD:7411694
NCBI chr12:1,400,143...1,406,267
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CFH
complement factor H
no_association susceptibility
ISO
DNA:missense mutation:cds:p.Y402H (rs1061170) (human) DNA:SNP, missense mutation:promoter, cds:g.-257C>T, p.I62V (rs3753394, rs800292) (human)
RGD
PMID:18515590
RGD:7411726
NCBI chr38:2,878,677...2,956,226
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CRP
C-reactive protein
ISO
RGD
PMID:17400294
RGD:9491775
NCBI chr38:22,396,787...22,398,180
Ensembl chr38:22,396,263...22,399,166
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ELN
elastin
no_association susceptibility
ISO
DNA:SNP: :rs2301995(human) DNA:SNP,haplotype: :rs2301995(human)
RGD
PMID:18326737 PMID:21391811
RGD:9585729 RGD:9585730
NCBI chr 6:6,299,524...6,331,425
Ensembl chr 6:6,300,727...6,331,325
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HTRA1
HtrA serine peptidase 1
susceptibility
ISO
DNA:snp:promoter:g.-625G>A (rs11200638) (human) human gene in mouse model
RGD
PMID:21844367 PMID:23326481
RGD:7394749 RGD:7394751
NCBI chr28:32,133,779...32,157,835
Ensembl chr28:32,132,547...32,157,409
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MMP2
matrix metallopeptidase 2
ISO
protein:increased expression:serum
RGD
PMID:23559867
RGD:8547885
NCBI chr 2:60,471,092...60,492,991
Ensembl chr 2:60,471,257...60,494,113
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MMP9
matrix metallopeptidase 9
ISO
protein:increased expression:serum
RGD
PMID:23559867
RGD:8547885
NCBI chr24:33,274,260...33,281,116
Ensembl chr24:33,274,268...33,281,293
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VEGFA
vascular endothelial growth factor A
susceptibility
ISO
DNA:SNP,haplotype: :rs833069(human)
RGD
PMID:22307775
RGD:7483605
NCBI chr12:12,209,032...12,224,978
Ensembl chr12:12,208,231...12,224,965
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DLA88
MHC class I DLA-88
ISO
DNA:polymorphism:cds:HLA-B7 (human)
RGD
PMID:14522093
RGD:7364917
NCBI chr12:892,442...895,691
Ensembl chr12:892,388...1,021,690
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CXCL8
C-X-C motif chemokine ligand 8
severity
ISO
protein:increased expression:serum (human)
RGD
PMID:17488320
RGD:39939053
NCBI chr13:62,435,035...62,438,354
Ensembl chr13:62,434,422...62,438,354
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IL10
interleukin 10
ISO
DNA:SNP:promoter:−1082G>A (human)
RGD
PMID:18436829
RGD:7365046
NCBI chr 7:5,933,285...5,937,057
Ensembl chr 7:5,933,285...5,937,057
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IL6
interleukin 6
susceptibility
ISO
DNA:polymorphism:promoter:-174G>C(human)
RGD
PMID:23336844
RGD:7829805
NCBI chr14:36,474,268...36,478,519
Ensembl chr14:36,473,394...36,478,519
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