RGD DISEASE ONTOLOGY - ANNOTATIONS
RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.
Term: prolapse of female genital organ
Accession: DOID:1284
browse the term
Definition: A female reproductive system disease that is characteried by the descent of one or more of the pelvic structures (bladder, uterus, vagina) from the normal anatomic location toward or through the vaginal opening. (DO)
Synonyms: primary_id: RDO:9004563
xref: ICD9CM:618.8
For additional species annotation, visit the
Alliance of Genome Resources .
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Foxc1
forkhead box C1
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:14630904
NCBI chr17:33,947,501...33,951,484
Ensembl chr17:33,947,506...33,951,484
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Hmgn2
high mobility group nucleosomal binding domain 2
ISS
OMIM:180500
MouseDO
NCBI chr 5:152,195,359...152,198,813
Ensembl chr 5:152,195,361...152,198,813
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Pax6
paired box 6
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:14630904
NCBI chr 3:95,700,241...95,728,682
Ensembl chr 3:95,707,386...95,728,624
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Pitx2
paired-like homeodomain 2
ISO
ClinVar Annotator: match by term: Axenfeld-Rieger syndrome type 1 CTD Direct Evidence: marker/mechanism ClinVar Annotator: match by OMIM:180500
OMIM ClinVar CTD
PMID:8944018 PMID:9685346 PMID:10490637 PMID:10502778 PMID:10644443 PMID:11301317 PMID:11487566 PMID:12612071 PMID:14623826 PMID:14630904 PMID:15378534 PMID:15728254 PMID:15895993 PMID:16498627 PMID:18045789 PMID:18723525 PMID:19052653 PMID:20881294 PMID:22569110 PMID:25741868 PMID:26220699 PMID:28492532 PMID:29100920
NCBI chr 2:233,602,732...233,621,059
Ensembl chr 2:233,602,732...233,621,129
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Prdm5
PR/SET domain 5
ISO
ClinVar Annotator: match by term: Axenfeld-Rieger syndrome type 1
ClinVar
PMID:26489929
NCBI chr 4:96,659,062...96,810,816
Ensembl chr 4:96,659,084...96,812,263
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Casq2
calsequestrin 2
ISO
ClinVar Annotator: match by term: Caudal dysgenesis syndrome
ClinVar
PMID:24033266 PMID:25741868 PMID:26196381 PMID:28492532
NCBI chr 2:204,512,361...204,568,643
Ensembl chr 2:204,512,302...204,568,656
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Cdx2
caudal type homeo box 2
ISO
ClinVar Annotator: match by term: Sirenomelia
ClinVar
PMID:25741868
NCBI chr12:9,464,026...9,470,565
Ensembl chr12:9,464,026...9,470,565
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Pcsk5
proprotein convertase subtilisin/kexin type 5
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:18519639
NCBI chr 1:236,031,988...236,313,858
Ensembl chr 1:236,031,988...236,313,858
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Ryr1
ryanodine receptor 1
ISO
ClinVar Annotator: match by term: Sacral agenesis
ClinVar
PMID:18564 PMID:9497245 PMID:10484775 PMID:11575529 PMID:12059893 PMID:12220451 PMID:12434264 PMID:16084090 PMID:16835904 PMID:16917943 PMID:19648156 PMID:19919814 PMID:23558838 PMID:23919265 PMID:24033266 PMID:24433488 PMID:25558065 PMID:25741868 PMID:25960145 PMID:27586648 PMID:28492532
NCBI chr 1:87,959,596...88,066,252
Ensembl chr 1:87,959,712...88,066,101
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Vangl1
VANGL planar cell polarity protein 1
ISO
ClinVar Annotator: match by term: Sacral defect with anterior meningocele ClinVar Annotator: match by term: Caudal dysgenesis syndrome ClinVar Annotator: match by synonym: Caudal regression syndrome
OMIM ClinVar
PMID:17409324 PMID:19319979 PMID:22892949 PMID:24033266 PMID:24307374 PMID:24407469 PMID:24452931 PMID:24838524 PMID:25068569 PMID:25208524 PMID:25741868 PMID:26196381 PMID:28492532
NCBI chr 2:204,575,592...204,625,835
Ensembl chr 2:204,575,466...204,625,743
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Ace
angiotensin I converting enzyme
IEP
protein:increased activity:lung (rat)
RGD
PMID:9498404
RGD:12859277
NCBI chr10:94,170,766...94,213,831
Ensembl chr10:94,170,766...94,187,822
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Agtr2
angiotensin II receptor, type 2
IMP
RGD
PMID:22113494
RGD:6903875
NCBI chr X:119,389,480...119,393,845
Ensembl chr X:119,390,013...119,393,842
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Atp7a
ATPase copper transporting alpha
IEP
mRNA, protein:decreased expression:diaphragm (rat)
RGD
PMID:25319798
RGD:11341670
NCBI chr X:77,076,085...77,193,644
Ensembl chr X:77,076,106...77,193,644
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Bmp4
bone morphogenetic protein 4
IEP
mRNA:decreased expression:heart:
RGD
PMID:18280291
RGD:9068407
NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
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Cbl
Cbl proto-oncogene
IEP
mRNA,protein:decreased expression, hypophosphorylation:lung, alveolar epithelium:
RGD
PMID:23143077
RGD:11038813
NCBI chr 8:48,481,256...48,564,775
Ensembl chr 8:48,489,036...48,564,722
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Ccl2
C-C motif chemokine ligand 2
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:30418988
NCBI chr10:69,412,065...69,413,863
Ensembl chr10:69,412,017...69,413,870
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Ccn2
cellular communication network factor 2
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:20939759 PMID:21258935
NCBI chr 1:21,851,657...21,854,773
Ensembl chr 1:21,851,660...21,854,773
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Cdk8
cyclin-dependent kinase 8
ISO
ClinVar Annotator: match by term: DIH
ClinVar
PMID:25741868
NCBI chr12:10,496,273...10,561,335
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Des
desmin
ISO
CTD Direct Evidence: marker/mechanism ClinVar Annotator: match by term: Congenital diaphragmatic hernia
CTD ClinVar
PMID:14724127 PMID:15477095 PMID:16217025 PMID:16519886 PMID:16828798 PMID:16865695 PMID:17325244 PMID:17626518 PMID:20474083 PMID:21842594 PMID:22215463 PMID:23143191 PMID:23168288 PMID:23806086 PMID:23861362 PMID:24033266 PMID:24088041 PMID:25214167 PMID:25736269 PMID:25741868 PMID:26467025 PMID:27651373 PMID:28492532
NCBI chr 9:82,556,574...82,564,288
Ensembl chr 9:82,556,573...82,564,294
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Eln
elastin
IEP
mRNA,protein:increased expression:lung:
RGD
PMID:12194112
RGD:9585688
NCBI chr12:24,978,478...25,021,864
Ensembl chr12:24,978,483...25,021,863
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Ep300
E1A binding protein p300
IEP
mRNA:decreased expression:lung
RGD
PMID:24488106
RGD:9588310
NCBI chr 7:122,818,194...122,889,055
Ensembl chr 7:122,818,975...122,861,296
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Epo
erythropoietin
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:27880037
NCBI chr12:22,274,828...22,278,268
Ensembl chr12:22,274,828...22,278,266
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Fbn1
fibrillin 1
ISO
ClinVar Annotator: match by term: Congenital diaphragmatic hernia
ClinVar
PMID:23806086 PMID:24088041 PMID:25736269
NCBI chr 3:117,569,708...117,766,160
Ensembl chr 3:117,569,697...117,766,120
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Fgfrl1
fibroblast growth factor receptor-like 1
ISO
CTD Direct Evidence: marker/mechanism ClinVar Annotator: match by term: Congenital diaphragmatic hernia
CTD ClinVar
PMID:20938900 PMID:25741868
NCBI chr14:2,020,110...2,032,169
Ensembl chr14:2,018,500...2,032,593
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Foxc2
forkhead box C2
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:27663689
NCBI chr19:53,044,379...53,047,081
Ensembl chr19:53,044,379...53,047,081
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Foxf1
forkhead box F1
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:27663689
NCBI chr19:53,012,306...53,016,100
Ensembl chr19:53,012,332...53,016,086
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Fras1
Fraser extracellular matrix complex subunit 1
ISO
ClinVar Annotator: match by term: Congenital diaphragmatic hernia
ClinVar
PMID:25741868 PMID:28492532
NCBI chr14:14,438,392...14,853,016
Ensembl chr14:14,439,082...14,689,554
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Frem1
Fras1 related extracellular matrix 1
ISO IEP
DNA:deletion, frame shift:cds, splice junction: ClinVar Annotator: match by term: Congenital diaphragmatic hernia CTD Direct Evidence: marker/mechanism mRNA,protein:decreased expression:diaphragm:
ClinVar CTD
PMID:23221805 PMID:23806086 PMID:24088041 PMID:25736269 PMID:25741868 PMID:26382659 , PMID:23221805 , PMID:26382659 , PMID:23221805
RGD:11554181 , RGD:11554195 , RGD:11554181
NCBI chr 5:101,018,009...101,166,794
Ensembl chr 5:101,020,448...101,166,651
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Frem2
FRAS1 related extracellular matrix 2
ISO
ClinVar Annotator: match by term: Congenital diaphragmatic hernia
ClinVar
PMID:25741868 PMID:28492532
NCBI chr 2:142,747,501...142,885,604
Ensembl chr 2:142,747,501...142,885,604
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Gata4
GATA binding protein 4
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:23426975
NCBI chr15:46,386,703...46,458,679
Ensembl chr15:46,386,712...46,432,965
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Gata6
GATA binding protein 6
IEP ISO
mRNA:decreased expression:heart (rat) ClinVar Annotator: match by term: DIH ClinVar Annotator: match by term: Congenital diaphragmatic hernia
ClinVar
PMID:22158542 PMID:24385578 , PMID:18280291
RGD:9068407
NCBI chr18:2,415,821...2,447,087
Ensembl chr18:2,416,552...2,446,338
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Gli3
GLI family zinc finger 3
ISO
ClinVar Annotator: match by term: Congenital diaphragmatic hernia
ClinVar
NCBI chr17:52,294,942...52,569,036
Ensembl chr17:52,294,942...52,569,036
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Igf1
insulin-like growth factor 1
IEP
mRNA:decreased expression:heart (rat)
RGD
PMID:11409163
RGD:12904929
NCBI chr 7:28,412,123...28,491,815
Ensembl chr 7:28,412,198...28,486,609
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Igf1r
insulin-like growth factor 1 receptor
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:20620343 PMID:21433279
NCBI chr 1:128,924,921...129,213,816
Ensembl chr 1:128,924,966...129,206,516
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Igf2
insulin-like growth factor 2
treatment
IEP
RGD
PMID:24352370
RGD:10402563
NCBI chr 1:215,828,102...215,839,081
Ensembl chr 1:215,828,102...215,846,911
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Igf2r
insulin-like growth factor 2 receptor
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:20620343 PMID:21433279
NCBI chr 1:48,176,095...48,264,482
Ensembl chr 1:48,176,106...48,264,477
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Igfbp3
insulin-like growth factor binding protein 3
IEP
RGD
PMID:19844724
RGD:10402761
NCBI chr14:87,457,647...87,465,374
Ensembl chr14:87,457,647...87,465,374
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Igfbp5
insulin-like growth factor binding protein 5
IEP
RGD
PMID:19844724
RGD:10402761
NCBI chr 9:80,154,230...80,166,813
Ensembl chr 9:80,150,211...80,167,033
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Insr
insulin receptor
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:21433279
NCBI chr12:1,682,527...1,816,414
Ensembl chr12:1,680,957...1,816,414
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Kcnq5
potassium voltage-gated channel subfamily Q member 5
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:28189443
NCBI chr 9:27,565,869...28,141,114
Ensembl chr 9:27,562,959...27,761,733
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Kif7
kinesin family member 7
IEP ISS
mRNA,protein:decreased expression:diaphragmatic mesenchyme, pulmonary mesenchyme; OMIM:142340 | OMIM:222400 | OMIM:610187
MouseDO
PMID:25921351
RGD:11553839
NCBI chr 1:141,434,183...141,452,592
Ensembl chr 1:141,434,625...141,451,075
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Lrp1
LDL receptor related protein 1
ISS
OMIM:142340 | OMIM:222400 | OMIM:610187
MouseDO
NCBI chr 7:70,846,313...70,927,028
Ensembl chr 7:70,846,344...70,926,903
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Lztr1
leucine-zipper-like transcription regulator 1
ISO
ClinVar Annotator: match by term: Congenital diaphragmatic hernia
ClinVar
PMID:25741868
NCBI chr11:87,381,638...87,397,849
Ensembl chr11:87,381,899...87,397,498
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Met
MET proto-oncogene, receptor tyrosine kinase
ISO
ClinVar Annotator: match by term: Congenital diaphragmatic hernia
ClinVar
PMID:1104268 PMID:14559814 PMID:17483355 PMID:21970370 PMID:22703879 PMID:23806086 PMID:24088041 PMID:24728327 PMID:25605252 PMID:25736269 PMID:25741868 PMID:25859546 PMID:26467025 PMID:28492532
NCBI chr 4:44,747,467...44,854,628
Ensembl chr 4:44,774,741...44,852,665
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Mn1
MN1 proto-oncogene, transcriptional regulator
ISO
ClinVar Annotator: match by term: DIH
ClinVar
PMID:25741868 PMID:31834374
NCBI chr12:51,214,192...51,250,230
Ensembl chr12:51,214,192...51,250,230
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Myh7
myosin heavy chain 7
ISO
ClinVar Annotator: match by term: Agenesis of hemidiaphragm
ClinVar
PMID:12707239 PMID:17125710 PMID:18076673 PMID:20394946 PMID:20800588 PMID:22260945 PMID:23549607 PMID:23690394 PMID:24033266 PMID:25125180 PMID:25524337 PMID:25611685 PMID:25741868 PMID:25935763 PMID:27247418 PMID:27532257 PMID:27600940 PMID:28067235 PMID:28492532 PMID:28606303 PMID:30745532 PMID:32013205
NCBI chr15:33,605,769...33,657,761
Ensembl chr15:33,634,422...33,656,089
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Myod1
myogenic differentiation 1
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:21258934
NCBI chr 1:102,396,538...102,399,248
Ensembl chr 1:102,396,538...102,399,248
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Ndst1
N-deacetylase and N-sulfotransferase 1
ISS
OMIM:142340 | OMIM:222400 | OMIM:610187
MouseDO
NCBI chr18:55,951,497...56,014,107
Ensembl chr18:55,955,389...55,992,885
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Nos3
nitric oxide synthase 3
IEP
protein:decreased expression:pulmonary artery (rat)
RGD
PMID:29216632
RGD:13504720
NCBI chr 4:7,321,908...7,342,404
Ensembl chr 4:7,320,668...7,342,410
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Nr2f2
nuclear receptor subfamily 2, group F, member 2
ISS
OMIM:142340 | OMIM:222400 | OMIM:610187
MouseDO
NCBI chr 1:131,447,671...131,465,749
Ensembl chr 1:131,448,447...131,460,473
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Pax3
paired box 3
ISO
ClinVar Annotator: match by term: Congenital diaphragmatic hernia
ClinVar
PMID:8589691 PMID:8863157 PMID:9584079 PMID:9856573 PMID:23806086 PMID:24033266 PMID:24088041 PMID:25736269 PMID:25741868 PMID:26467025 PMID:29407415
NCBI chr 9:84,004,004...84,101,226
Ensembl chr 9:84,005,183...84,101,172
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Pdgfra
platelet derived growth factor receptor alpha
ISS
OMIM:142340 | OMIM:222400 | OMIM:610187
MouseDO
NCBI chr14:35,527,926...35,581,130
Ensembl chr14:35,527,927...35,581,031
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Pim1
Pim-1 proto-oncogene, serine/threonine kinase
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:25812446
NCBI chr20:8,165,423...8,169,557
Ensembl chr20:8,165,307...8,169,555
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Rhoa
ras homolog family member A
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:25783350
NCBI chr 8:117,082,440...117,116,244
Ensembl chr 8:117,106,576...117,116,167
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Robo4
roundabout guidance receptor 4
ISO
ClinVar Annotator: match by term: Congenital diaphragmatic hernia
ClinVar
NCBI chr 8:39,082,693...39,093,344
Ensembl chr 8:39,083,327...39,093,277
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Slit3
slit guidance ligand 3
ISS
OMIM:142340 | OMIM:222400 | OMIM:610187
MouseDO
NCBI chr10:19,924,200...20,517,918
Ensembl chr10:20,320,878...20,518,518
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Sod1
superoxide dismutase 1
IEP
mRNA:decreased expression:lung
RGD
PMID:26534761
RGD:11035301
NCBI chr11:30,363,282...30,368,858
Ensembl chr11:30,363,280...30,368,862
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Sod2
superoxide dismutase 2
IEP
mRNA:decreased expression:lung
RGD
PMID:26534761
RGD:11035301
NCBI chr 1:47,914,757...47,921,587
Ensembl chr 1:47,914,759...47,921,587
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Sox7
SRY-box transcription factor 7
ISS
OMIM:142340 | OMIM:222400 | OMIM:610187
MouseDO
NCBI chr15:47,293,699...47,300,460
Ensembl chr15:47,293,699...47,300,460
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Stat3
signal transducer and activator of transcription 3
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:25812446
NCBI chr10:88,790,401...88,842,263
Ensembl chr10:88,790,408...88,842,233
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Tnf
tumor necrosis factor
IEP
RGD
PMID:10541330
RGD:12904053
NCBI chr20:5,189,382...5,192,000
Ensembl chr20:5,189,390...5,192,000
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Vegfa
vascular endothelial growth factor A
IEP
protein:decreased expression:lung:
RGD
PMID:15879288
RGD:7421593
NCBI chr 9:17,340,341...17,355,681
Ensembl chr 9:17,340,341...17,355,681
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Wnt11
Wnt family member 11
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:25783350
NCBI chr 1:163,794,136...163,813,756
Ensembl chr 1:163,797,660...163,813,756
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Wt1
WT1 transcription factor
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:21072664
NCBI chr 3:95,133,221...95,180,574
Ensembl chr 3:95,133,713...95,180,564
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Zfpm2
zinc finger protein, multitype 2
ISS
OMIM:142340 | OMIM:222400 | OMIM:610187
MouseDO
NCBI chr 7:79,471,277...79,964,405
Ensembl chr 7:79,638,046...79,964,405
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Agt
angiotensinogen
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:16292651
NCBI chr19:57,321,594...57,333,460
Ensembl chr19:57,321,640...57,333,433
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Agtr1a
angiotensin II receptor, type 1a
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:16292651
NCBI chr17:35,907,102...35,958,136
Ensembl chr17:35,907,108...35,958,077
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Agtr1b
angiotensin II receptor, type 1b
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:16292651
NCBI chr 2:105,149,020...105,224,335
Ensembl chr 2:105,149,020...105,224,295
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Aqp5
aquaporin 5
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:17245593 PMID:17270560
NCBI chr 7:141,249,044...141,252,576
Ensembl chr 7:141,249,044...141,252,578
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Bmp4
bone morphogenetic protein 4
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:18280291
NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
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Cdk8
cyclin-dependent kinase 8
ISO
ClinVar Annotator: match by term: Diaphragmatic hernia
ClinVar
PMID:25741868
NCBI chr12:10,496,273...10,561,335
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Cftr
CF transmembrane conductance regulator
ISO
CTD Direct Evidence: therapeutic
CTD
PMID:16473863
NCBI chr 4:42,693,263...42,860,679
Ensembl chr 4:42,692,836...42,860,676
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Edn1
endothelin 1
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:9473106 PMID:10693666
NCBI chr17:22,136,814...22,143,745
Ensembl chr17:22,137,324...22,143,324
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Ednra
endothelin receptor type A
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:9473106 PMID:10693666
NCBI chr19:33,928,356...33,991,703
Ensembl chr19:33,928,356...33,991,703
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Ednrb
endothelin receptor type B
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:10693666
NCBI chr15:88,004,775...88,036,354
Ensembl chr15:88,006,977...88,036,354
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Eln
elastin
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:10359170
NCBI chr12:24,978,478...25,021,864
Ensembl chr12:24,978,483...25,021,863
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Fgf18
fibroblast growth factor 18
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:17303798
NCBI chr10:18,047,109...18,082,290
Ensembl chr10:18,047,109...18,063,391
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Fgf2
fibroblast growth factor 2
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:10646786
NCBI chr 2:124,081,072...124,134,133
Ensembl chr 2:124,081,072...124,134,681
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Foxa2
forkhead box A2
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:16863852
NCBI chr 3:142,383,084...142,387,493
Ensembl chr 3:142,383,278...142,387,481
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Gata4
GATA binding protein 4
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:18280291
NCBI chr15:46,386,703...46,458,679
Ensembl chr15:46,386,712...46,432,965
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Gata6
GATA binding protein 6
ISO
ClinVar Annotator: match by term: Diaphragmatic hernia CTD Direct Evidence: marker/mechanism
ClinVar CTD
PMID:18280291 PMID:22158542 PMID:24385578
NCBI chr18:2,415,821...2,447,087
Ensembl chr18:2,416,552...2,446,338
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Gja1
gap junction protein, alpha 1
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:16292552 PMID:16720372
NCBI chr20:37,876,650...37,889,097
Ensembl chr20:37,876,650...37,889,089
G
Hoxa5
homeo box A5
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:18351244
G
Hoxb3
homeo box B3
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:18351244
NCBI chr10:84,170,629...84,196,823
Ensembl chr10:84,182,118...84,195,796
G
Icam1
intercellular adhesion molecule 1
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:12759764 PMID:17245593
NCBI chr 8:22,035,287...22,047,049
Ensembl chr 8:22,035,256...22,047,059
G
Igf1
insulin-like growth factor 1
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:10370016
NCBI chr 7:28,412,123...28,491,815
Ensembl chr 7:28,412,198...28,486,609
G
Igf2
insulin-like growth factor 2
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:10370016
NCBI chr 1:215,828,102...215,839,081
Ensembl chr 1:215,828,102...215,846,911
G
Il6
interleukin 6
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:18500730
NCBI chr 4:3,043,231...3,047,807
Ensembl chr 4:3,043,231...3,047,807
G
Kcna2
potassium voltage-gated channel subfamily A member 2
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:15088113
NCBI chr 2:209,838,607...209,852,471
Ensembl chr 2:209,838,869...209,852,471
G
Kcnb1
potassium voltage-gated channel subfamily B member 1
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:15088113
NCBI chr 3:163,850,785...163,935,610
Ensembl chr 3:163,850,785...163,935,617
G
Kcnma1
potassium calcium-activated channel subfamily M alpha 1
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:15088113
NCBI chr15:344,204...1,048,849
Ensembl chr15:344,360...1,047,956
G
Lrp2
LDL receptor related protein 2
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:17632512
NCBI chr 3:55,665,153...55,822,484
Ensembl chr 3:55,665,145...55,822,551
G
Mn1
MN1 proto-oncogene, transcriptional regulator
ISO
ClinVar Annotator: match by term: Diaphragmatic hernia
ClinVar
PMID:25741868 PMID:31834374
NCBI chr12:51,214,192...51,250,230
Ensembl chr12:51,214,192...51,250,230
G
Myh7
myosin heavy chain 7
ISO
ClinVar Annotator: match by term: Diaphragmatic hernia
ClinVar
PMID:12707239 PMID:17125710 PMID:18076673 PMID:20394946 PMID:20800588 PMID:22260945 PMID:23549607 PMID:23690394 PMID:24033266 PMID:25125180 PMID:25524337 PMID:25611685 PMID:25741868 PMID:25935763 PMID:27247418 PMID:27532257 PMID:27600940 PMID:28067235 PMID:28492532 PMID:28606303 PMID:30745532 PMID:32013205
NCBI chr15:33,605,769...33,657,761
Ensembl chr15:33,634,422...33,656,089
G
Myod1
myogenic differentiation 1
IEP
mRNA:decreased expression:diaphragm
RGD
PMID:21258934
RGD:9686080
NCBI chr 1:102,396,538...102,399,248
Ensembl chr 1:102,396,538...102,399,248
G
Nkx2-1
NK2 homeobox 1
IEP ISO
mRNA, protein:increased expression:lung CTD Direct Evidence: marker/mechanism
CTD
PMID:10830305 PMID:16863852 , PMID:17245593
RGD:1600158
NCBI chr 6:77,418,096...77,423,383
Ensembl chr 6:77,418,096...77,421,286
G
Nos3
nitric oxide synthase 3
IEP ISO
mRNA, protein:decreased expression:lung CTD Direct Evidence: marker/mechanism
CTD
PMID:7576705 PMID:8863223 , PMID:7576705
RGD:5132862
NCBI chr 4:7,321,908...7,342,404
Ensembl chr 4:7,320,668...7,342,410
G
Nppa
natriuretic peptide A
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:11584395
NCBI chr 5:164,808,407...164,809,716
Ensembl chr 5:164,808,323...164,809,705
G
Nr2f2
nuclear receptor subfamily 2, group F, member 2
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:17436238
NCBI chr 1:131,447,671...131,465,749
Ensembl chr 1:131,448,447...131,460,473
G
Pax3
paired box 3
IEP
mRNA:decreased expression:heart (rat)
RGD
PMID:15616818
RGD:1580942
NCBI chr 9:84,004,004...84,101,226
Ensembl chr 9:84,005,183...84,101,172
G
Rxra
retinoid X receptor alpha
IEP
mRNA:increased expression:lung
RGD
PMID:17270546
RGD:1643107
NCBI chr 3:6,272,560...6,295,354
Ensembl chr 3:6,211,789...6,295,908
G
Sftpb
surfactant protein B
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:10830305 PMID:16863852
NCBI chr 4:100,166,855...100,175,941
Ensembl chr 4:100,166,863...100,175,938
G
Sftpc
surfactant protein C
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:10751355
NCBI chr15:52,211,538...52,214,480
Ensembl chr15:52,211,544...52,214,616
G
Slit3
slit guidance ligand 3
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:17436238
NCBI chr10:19,924,200...20,517,918
Ensembl chr10:20,320,878...20,518,518
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Stra6
signaling receptor and transporter of retinol STRA6
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:17273977
NCBI chr 8:62,925,364...62,944,438
Ensembl chr 8:62,925,357...62,944,437
G
Tgfb1
transforming growth factor, beta 1
IEP ISO
protein:increased expression:lung CTD Direct Evidence: marker/mechanism
CTD
PMID:10646786 , PMID:19635314
RGD:4145129
NCBI chr 1:82,480,875...82,497,196
Ensembl chr 1:82,480,195...82,497,199
G
Thra
thyroid hormone receptor alpha
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:11685700
NCBI chr10:86,657,285...86,684,935
Ensembl chr10:86,657,285...86,684,933
G
Thrb
thyroid hormone receptor beta
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:11685700
NCBI chr15:8,890,578...9,239,815
Ensembl chr15:8,890,578...9,086,282
G
Tnf
tumor necrosis factor
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:10541330
NCBI chr20:5,189,382...5,192,000
Ensembl chr20:5,189,390...5,192,000
G
Uchl1
ubiquitin C-terminal hydrolase L1
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:18958481
NCBI chr14:43,133,224...43,143,942
Ensembl chr14:43,133,218...43,143,973
G
Vcam1
vascular cell adhesion molecule 1
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:12759764
NCBI chr 2:219,071,193...219,090,931
Ensembl chr 2:219,071,193...219,097,619
G
Wt1
WT1 transcription factor
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:17436238
NCBI chr 3:95,133,221...95,180,574
Ensembl chr 3:95,133,713...95,180,564
G
Zfpm2
zinc finger protein, multitype 2
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:17436238
NCBI chr 7:79,471,277...79,964,405
Ensembl chr 7:79,638,046...79,964,405
G
Zfpm2
zinc finger protein, multitype 2
ISO
ClinVar Annotator: match by term: Diaphragmatic hernia 3 ClinVar Annotator: match by OMIM:610187
OMIM ClinVar
PMID:14517948 PMID:16103912 PMID:17568391 PMID:20807224 PMID:21919901 PMID:24702427 PMID:25741868 PMID:28492532
NCBI chr 7:79,471,277...79,964,405
Ensembl chr 7:79,638,046...79,964,405
G
Lmbrd1
LMBR1 domain containing 1
ISO
ClinVar Annotator: match by term: Donnai Barrow syndrome
ClinVar
PMID:19136951 PMID:25741868 PMID:28492532
NCBI chr 9:30,939,555...31,038,381
Ensembl chr 9:30,939,555...31,038,379
G
Lrp2
LDL receptor related protein 2
ISO
ClinVar Annotator: match by term: Donnai-Barrow syndrome ClinVar Annotator: match by term: Donnai Barrow syndrome ClinVar Annotator: match by OMIM:222448
OMIM ClinVar
PMID:8266995 PMID:9475100 PMID:12923867 PMID:17632512 PMID:18414213 PMID:20359920 PMID:23033978 PMID:24319098 PMID:24406863 PMID:24876117 PMID:25158045 PMID:25326635 PMID:25741868 PMID:26118977 PMID:26529358 PMID:28492532 PMID:32238909
NCBI chr 3:55,665,153...55,822,484
Ensembl chr 3:55,665,145...55,822,551
G
Cc2d2a
coiled-coil and C2 domain containing 2A
ISO
ClinVar Annotator: match by term: Encephalocele
ClinVar
PMID:25741868 PMID:26862157 PMID:31680349
NCBI chr14:71,895,128...71,979,452
Ensembl chr14:71,895,246...71,973,419
G
Cep290
centrosomal protein 290
ISO
ClinVar Annotator: match by term: Occipital encephalocele ClinVar Annotator: match by term: Encephalocele
ClinVar
PMID:17345604 PMID:17564974 PMID:17705300 PMID:20683928 PMID:21866095 PMID:25741868 PMID:26092869 PMID:28492532 PMID:28497568 PMID:29398085 PMID:31680349
NCBI chr 7:40,217,269...40,306,327
Ensembl chr 7:40,217,269...40,306,327
G
Dnai3
dynein axonemal intermediate chain 3
ISO
ClinVar Annotator: match by term: Occipital encephalocele
ClinVar
PMID:29285825
NCBI chr 2:251,912,432...251,970,699
Ensembl chr 2:251,912,368...251,970,768
G
Pibf1
progesterone immunomodulatory binding factor 1
ISO
ClinVar Annotator: match by term: Cephalocele
ClinVar
PMID:30858804 PMID:31474318
NCBI chr15:83,494,110...83,663,202
Ensembl chr15:83,495,377...83,663,143
G
Rpgrip1l
Rpgrip1-like
ISO
associated with Meckel Syndrome, Type 5;DNA:mutations:exons:
RGD
PMID:17558409
RGD:11073359
NCBI chr19:17,115,266...17,208,055
Ensembl chr19:17,115,412...17,208,055
G
Szt2
SZT2 subunit of KICSTOR complex
ISO
ClinVar Annotator: match by term: Encephalocele
ClinVar
PMID:23932106 PMID:25741868 PMID:28492532 PMID:31680349
NCBI chr 5:137,192,120...137,238,384
Ensembl chr 5:137,190,875...137,238,354
G
Aldh18a1
aldehyde dehydrogenase 18 family, member A1
ISO
DNA:mutations:cds:c.412C>T(p.R138W), 413G>A(p.R138L)(human)
RGD
PMID:26320891
RGD:13434923
NCBI chr 1:259,641,673...259,674,521
Ensembl chr 1:259,641,676...259,674,425 Ensembl chr 1:259,641,676...259,674,425
G
Efemp1
EGF containing fibulin extracellular matrix protein 1
ISO
RGD
PMID:17872905
RGD:10401789
NCBI chr14:113,202,382...113,294,993
Ensembl chr14:113,202,419...113,295,014
G
Lage3
L antigen family, member 3
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:28805828
NCBI chr X:156,355,376...156,356,799
Ensembl chr X:156,355,376...156,356,799
G
Osgep
O-sialoglycoprotein endopeptidase
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:28805828
NCBI chr15:27,842,447...27,849,866
Ensembl chr15:27,842,422...27,849,974
G
Tp53rk
TP53 regulating kinase
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:28805828
NCBI chr 3:163,552,166...163,555,925
Ensembl chr 3:163,552,166...163,555,596
G
Tprkb
Tp53rk binding protein
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:28805828
NCBI chr 4:117,589,527...117,604,481
Ensembl chr 4:117,780,533...117,785,941 Ensembl chr 4:117,780,533...117,785,941
G
Wdr4
WD repeat domain 4
ISO
ClinVar Annotator: match by term: Galloway-Mowat syndrome
ClinVar
PMID:25741868 PMID:30079490
NCBI chr20:10,240,571...10,264,818
Ensembl chr20:10,239,154...10,257,044
G
Wdr73
WD repeat domain 73
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:25466283
NCBI chr 1:142,711,955...142,720,292
Ensembl chr 1:142,711,789...142,720,257
G
Zfp592
zinc finger protein 592
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:20531441
NCBI chr 1:142,833,999...142,870,997
Ensembl chr 1:142,834,157...142,870,995
G
Eng
endoglin
ISO
ClinVar Annotator: match by term: Galloway-Mowat syndrome 1
ClinVar
PMID:12673790 PMID:15879500 PMID:21158752 PMID:23399955 PMID:24055113 PMID:25637381 PMID:25741868 PMID:28492532
NCBI chr 3:11,679,530...11,717,486
Ensembl chr 3:11,679,530...11,717,485
G
Wdr73
WD repeat domain 73
ISO
ClinVar Annotator: match by term: Galloway-Mowat syndrome 1
OMIM ClinVar
PMID:11391656 PMID:12030328 PMID:16217710 PMID:20531441 PMID:25466283 PMID:25741868 PMID:25873735 PMID:26070982 PMID:26123727 PMID:30315938
NCBI chr 1:142,711,955...142,720,292
Ensembl chr 1:142,711,789...142,720,257
G
Zfp592
zinc finger protein 592
ISO
ClinVar Annotator: match by term: Galloway-Mowat syndrome 1 ClinVar Annotator: match by term: Spinocerebellar ataxia autosomal recessive 5
ClinVar
PMID:12030328 PMID:20531441 PMID:25741868 PMID:26123727
NCBI chr 1:142,833,999...142,870,997
Ensembl chr 1:142,834,157...142,870,995
G
Lage3
L antigen family, member 3
ISO
ClinVar Annotator: match by term: GALLOWAY-MOWAT SYNDROME 2, X-LINKED
ClinVar OMIM
PMID:12693786 PMID:28805828
NCBI chr X:156,355,376...156,356,799
Ensembl chr X:156,355,376...156,356,799
G
Osgep
O-sialoglycoprotein endopeptidase
ISO
ClinVar Annotator: match by term: GALLOWAY-MOWAT SYNDROME 3 ClinVar Annotator: match by term: Galloway-Mowat syndrome 3
ClinVar OMIM
PMID:11519896 PMID:15966048 PMID:17897280 PMID:18019379 PMID:21791310 PMID:25741868 PMID:28272532 PMID:28805828
NCBI chr15:27,842,447...27,849,866
Ensembl chr15:27,842,422...27,849,974
G
Tp53rk
TP53 regulating kinase
ISO
ClinVar Annotator: match by term: GALLOWAY-MOWAT SYNDROME 4
ClinVar OMIM
PMID:28805828
NCBI chr 3:163,552,166...163,555,925
Ensembl chr 3:163,552,166...163,555,596
G
Tprkb
Tp53rk binding protein
ISO
ClinVar Annotator: match by term: GALLOWAY-MOWAT SYNDROME 5
ClinVar OMIM
PMID:28805828
NCBI chr 4:117,589,527...117,604,481
Ensembl chr 4:117,780,533...117,785,941 Ensembl chr 4:117,780,533...117,785,941
G
Wdr4
WD repeat domain 4
ISO
ClinVar Annotator: match by term: Galloway-Mowat syndrome 6 ClinVar Annotator: match by term: GALLOWAY-MOWAT SYNDROME 6
OMIM ClinVar
PMID:25741868 PMID:26416026 PMID:28617965 PMID:29597095 PMID:30079490
NCBI chr20:10,240,571...10,264,818
Ensembl chr20:10,239,154...10,257,044
G
Nup107
nucleoporin 107
ISO
ClinVar Annotator: match by term: GALLOWAY-MOWAT SYNDROME 7
OMIM ClinVar
PMID:25558065 PMID:25741868 PMID:28117080 PMID:28280135 PMID:30179222
NCBI chr 7:60,781,724...60,825,225
Ensembl chr 7:60,781,729...60,825,242
G
Nup133
nucleoporin 133
ISO
ClinVar Annotator: match by term: GALLOWAY-MOWAT SYNDROME 8
OMIM ClinVar
PMID:11793129 PMID:30427554
NCBI chr19:56,681,965...56,731,404
Ensembl chr19:56,681,979...56,731,372
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Add1
adducin 1
ISO
DNA:SNP: :p.G460W (human)
RGD
PMID:17051589
RGD:5148000
NCBI chr14:81,367,466...81,426,610
Ensembl chr14:81,367,468...81,426,496
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Igf1r
insulin-like growth factor 1 receptor
IEP
protein:increased expression:liver, intestine (rat)
RGD
PMID:23381816
RGD:12904922
NCBI chr 1:128,924,921...129,213,816
Ensembl chr 1:128,924,966...129,206,516
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Kit
KIT proto-oncogene receptor tyrosine kinase
severity
IEP
protein:decreased expression:intestine:
RGD
PMID:15486901
RGD:12910745
NCBI chr14:35,072,131...35,149,638
Ensembl chr14:35,072,108...35,149,610
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Lrp1
LDL receptor related protein 1
ISS
OMIM:230750
MouseDO
NCBI chr 7:70,846,313...70,927,028
Ensembl chr 7:70,846,344...70,926,903
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Nos2
nitric oxide synthase 2
IEP
protein:increased expression:intestine (rat)
RGD
PMID:21960425
RGD:5508749
NCBI chr10:66,188,290...66,221,621
Ensembl chr10:66,189,786...66,313,190
G
Col1a1
collagen type I alpha 1 chain
treatment
IDA
RGD
PMID:26578432
RGD:11041579
NCBI chr10:82,745,801...82,762,790
Ensembl chr10:82,745,801...82,762,789
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Col3a1
collagen type III alpha 1 chain
treatment
IDA
RGD
PMID:26578432
RGD:11041579
NCBI chr 9:52,023,295...52,059,221
Ensembl chr 9:52,023,295...52,059,217
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Barx1
BARX homeobox 1
ISO
ClinVar Annotator: match by term: Hiatal hernia
ClinVar
NCBI chr17:14,824,721...14,828,196
Ensembl chr17:14,824,734...14,828,329
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Fam120a
family with sequence similarity 120A
ISO
ClinVar Annotator: match by term: Hiatal hernia
ClinVar
NCBI chr17:16,106,101...16,196,054
Ensembl chr17:16,106,137...16,194,478
G
Fbp1
fructose-bisphosphatase 1
ISO
ClinVar Annotator: match by term: Hiatal hernia
ClinVar
NCBI chr17:396,175...417,480
Ensembl chr17:396,180...417,480
G
Fbp2
fructose-bisphosphatase 2
ISO
ClinVar Annotator: match by term: Hiatal hernia
ClinVar
NCBI chr17:372,554...389,918
Ensembl chr17:372,551...389,967
G
Mfsd14b
major facilitator superfamily domain containing 14B
ISO
ClinVar Annotator: match by term: Hiatal hernia
ClinVar
NCBI chr17:2,607,777...2,660,902
Ensembl chr17:2,607,777...2,660,902
G
Mirlet7a1
microRNA let-7a-1
ISO
ClinVar Annotator: match by term: Hiatal hernia
ClinVar
NCBI chr17:16,417,853...16,417,946
Ensembl chr17:16,417,855...16,417,954
G
Mirlet7d
microRNA let-7d
ISO
ClinVar Annotator: match by term: Hiatal hernia
ClinVar
NCBI chr17:16,419,980...16,420,077
Ensembl chr17:16,419,980...16,420,077
G
Phf2
PHD finger protein 2
ISO
ClinVar Annotator: match by term: Hiatal hernia
ClinVar
NCBI chr17:16,240,458...16,274,626
Ensembl chr17:16,204,427...16,274,624
G
Ptpdc1
protein tyrosine phosphatase domain containing 1
ISO
ClinVar Annotator: match by term: Hiatal hernia
ClinVar
NCBI chr17:16,333,369...16,381,887
Ensembl chr17:16,333,415...16,380,573
G
Zfp169
zinc finger protein 169
ISO
ClinVar Annotator: match by term: Hiatal hernia
ClinVar
NCBI chr17:16,443,324...16,471,329
Ensembl chr17:16,455,026...16,470,842
G
Col5a1
collagen type V alpha 1 chain
ISO
ClinVar Annotator: match by term: Inguinal hernia
ClinVar
PMID:25741868
NCBI chr 3:6,430,180...6,581,010
Ensembl chr 3:6,430,201...6,578,882
G
Nf1
neurofibromin 1
ISO
ClinVar Annotator: match by term: Inguinal hernia
ClinVar
PMID:25741868 PMID:28492532
NCBI chr10:66,732,460...66,928,706
Ensembl chr10:66,690,133...66,928,903
G
Tgfbr2
transforming growth factor, beta receptor 2
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:16885183
NCBI chr 8:124,310,288...124,399,345
Ensembl chr 8:124,312,754...124,399,494
G
Aspn
asporin
ISO
OMIM
NCBI chr17:14,655,958...14,681,355
Ensembl chr17:14,656,009...14,679,409
G
Ccr2
C-C motif chemokine receptor 2
IEP
mRNA,protein:increased expression:neuron,macrophage:
RGD
PMID:24462503
RGD:8661788
G
Cilp
cartilage intermediate layer protein
ISO
OMIM
NCBI chr 8:70,760,922...70,775,891
Ensembl chr 8:70,760,922...70,775,891
G
Col11a1
collagen type XI alpha 1 chain
ISO
ClinVar Annotator: match by term: Lumbar disc herniation, susceptibility to
OMIM ClinVar
PMID:17999364 PMID:25741868
NCBI chr 2:216,863,423...217,056,523
Ensembl chr 2:216,863,428...217,056,523
G
Col1a1
collagen type I alpha 1 chain
no_association
ISO
DNA:insertion DNA:polymorphism
RGD
PMID:18694864 , PMID:15994869
RGD:5688295 , RGD:5688297
NCBI chr10:82,745,801...82,762,790
Ensembl chr10:82,745,801...82,762,789
G
Col9a3
collagen type IX alpha 3 chain
ISO
ClinVar Annotator: match by term: Intervertebral disc disease, susceptibility to
OMIM ClinVar
PMID:11308397 PMID:25741868
NCBI chr 3:176,102,287...176,124,839
Ensembl chr 3:176,102,351...176,124,306
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Hif1a
hypoxia inducible factor 1 subunit alpha
IEP
protein:increased expression:dorsal root ganglion, neuron, cytoplasm (rat)
RGD
PMID:21243740
RGD:9068928
NCBI chr 6:96,810,868...96,856,303
Ensembl chr 6:96,810,907...96,856,052
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Mir155
microRNA 155
treatment
ISO
miRNA:decreased expression:nucleus pulposus
RGD
PMID:27227700 , PMID:27227700
RGD:24922221 , RGD:24922221
NCBI chr11:24,176,603...24,176,667
Ensembl chr11:24,176,603...24,176,667
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Thbs2
thrombospondin 2
ISO
ClinVar Annotator: match by synonym: Lumbar disc herniation, susceptibility to
OMIM ClinVar
PMID:18455130
NCBI chr 1:56,653,929...56,683,571
Ensembl chr 1:56,653,938...56,683,731
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Akt1
AKT serine/threonine kinase 1
disease_progression
ISO
RGD
PMID:21590431
RGD:5509092
NCBI chr 6:137,218,398...137,239,970
Ensembl chr 6:137,218,376...137,236,258
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Apoa4
apolipoprotein A4
ISO
protein:increased expression:cerebrospinal fluid (human)
RGD
PMID:16372267
RGD:5685665
NCBI chr 8:50,536,983...50,539,371
Ensembl chr 8:50,537,009...50,539,376
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Bdnf
brain-derived neurotrophic factor
IEP
protein:increased expression:dorsal root ganglion:
RGD
PMID:14615047
RGD:8657329
NCBI chr 3:100,768,637...100,819,216
Ensembl chr 3:100,768,637...100,819,210
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Col11a1
collagen type XI alpha 1 chain
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:17999364
NCBI chr 2:216,863,423...217,056,523
Ensembl chr 2:216,863,428...217,056,523
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Ctsl
cathepsin L
IEP
protein:increased expression:annulus fibrosus (rat)
RGD
PMID:15758467
RGD:2315595
NCBI chr17:1,873,105...1,879,266
Ensembl chr17:1,872,848...1,879,279
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Cx3cl1
C-X3-C motif chemokine ligand 1
IEP
mRNA, protein:increased expression:spinal cord
RGD
PMID:21224760
RGD:4891907
NCBI chr19:10,644,267...10,654,861
Ensembl chr19:10,644,244...10,653,800
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Cx3cr1
C-X3-C motif chemokine receptor 1
IEP
protein:increased expression:spinal cord
RGD
PMID:21224760
RGD:4891907
NCBI chr 8:128,740,756...128,754,514
Ensembl chr 8:128,740,756...128,754,514
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Gc
GC, vitamin D binding protein
ISO
protein:increased expression:cerebrospinal fluid
RGD
PMID:16868893
RGD:5509883
NCBI chr14:20,267,023...20,302,577
Ensembl chr14:20,266,891...20,302,581
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Igf1
insulin-like growth factor 1
IMP
RGD
PMID:21037532
RGD:8549460
NCBI chr 7:28,412,123...28,491,815
Ensembl chr 7:28,412,198...28,486,609
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Il1rl1
interleukin 1 receptor-like 1
IEP
protein:increased expression:spinal cord:
RGD
PMID:29329586
RGD:40400909
NCBI chr 9:47,133,483...47,184,316
Ensembl chr 9:47,134,034...47,182,170
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Il33
interleukin 33
IEP
protein:increased expression:spinal cord:
RGD
PMID:29329586
RGD:40400909
NCBI chr 1:248,112,611...248,147,030
Ensembl chr 1:248,132,090...248,147,029
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Mir223
microRNA 223
disease_progression
ISO
RGD
PMID:28460630
RGD:25823200
NCBI chr X:65,367,812...65,367,921
Ensembl chr X:65,367,812...65,367,921
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Tnf
tumor necrosis factor
IEP
RGD
PMID:24826482
RGD:10450584
NCBI chr20:5,189,382...5,192,000
Ensembl chr20:5,189,390...5,192,000
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Tnfrsf1b
TNF receptor superfamily member 1B
ISO
human protein in rat model
RGD
PMID:21057386
RGD:5131270
NCBI chr 5:163,136,390...163,167,299
Ensembl chr 5:163,136,390...163,167,299
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Vdr
vitamin D receptor
ISO
GAD
PMID:15118671
RGD:1331525
NCBI chr 7:139,344,452...139,394,138
Ensembl chr 7:139,342,063...139,394,166
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Dll3
delta like canonical Notch ligand 3
ISO
ClinVar Annotator: match by OMIM:277300 ClinVar Annotator: match by term: Spondylocostal dysostosis 1, autosomal recessive ClinVar Annotator: match by term: Jarcho-Levin syndrome
ClinVar OMIM
PMID:2805381 PMID:10742114 PMID:12791036 PMID:15200511 PMID:15717203 PMID:18485326 PMID:25741868 PMID:28492532
NCBI chr 1:85,485,875...85,493,683
Ensembl chr 1:85,485,289...85,493,685
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Mesp2
mesoderm posterior bHLH transcription factor 2
ISO
ClinVar Annotator: match by term: Spondylothoracic Dysostosis ClinVar Annotator: match by term: Jarcho-Levin syndrome
ClinVar
PMID:25741868
NCBI chr 1:141,550,633...141,553,239
Ensembl chr 1:141,550,633...141,553,230
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Plekhg2
pleckstrin homology and RhoGEF domain containing G2
ISO
ClinVar Annotator: match by term: Spondylocostal dysostosis 1, autosomal recessive
ClinVar
PMID:25741868
NCBI chr 1:85,386,492...85,399,699
Ensembl chr 1:85,386,470...85,399,699
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Adamts18
ADAM metallopeptidase with thrombospondin type 1 motif, 18
ISO
ClinVar Annotator: match by synonym: Knobloch syndrome 1
ClinVar
PMID:21862674 PMID:23667181
NCBI chr19:46,005,055...46,167,912
Ensembl chr19:46,005,277...46,101,250
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Col18a1
collagen type XVIII alpha 1 chain
ISO
ClinVar Annotator: match by term: Knobloch syndrome 1 ClinVar Annotator: match by OMIM:267750 ClinVar Annotator: match by term: RETINAL DETACHMENT AND OCCIPITAL ENCEPHALOCELE
OMIM ClinVar
PMID:1554013 PMID:10942434 PMID:12415512 PMID:14695535 PMID:17546652 PMID:17975799 PMID:19160445 PMID:19390655 PMID:20799329 PMID:20979194 PMID:21862674 PMID:21937992 PMID:23667181 PMID:24033266 PMID:25456301 PMID:25741868 PMID:26467025 PMID:28041643 PMID:28492532 PMID:29977801 PMID:30007336 PMID:32860008
NCBI chr20:12,225,202...12,332,858
Ensembl chr20:12,225,202...12,332,858
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Slc19a1
solute carrier family 19 member 1
ISO
ClinVar Annotator: match by term: Knobloch syndrome 1
ClinVar
PMID:1554013 PMID:14695535 PMID:19390655 PMID:21862674 PMID:23667181 PMID:24033266 PMID:25456301 PMID:25741868 PMID:26467025 PMID:28041643 PMID:28492532 PMID:29977801 PMID:32860008
NCBI chr20:12,334,675...12,354,517
Ensembl chr20:12,334,676...12,352,377
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Notch3
notch receptor 3
ISO
ClinVar Annotator: match by term: Lehman syndrome ClinVar Annotator: match by term: Lateral meningocele syndrome
ClinVar OMIM
PMID:9188658 PMID:15666314 PMID:21337686 PMID:23696373 PMID:25394726 PMID:25741868 PMID:26754023
NCBI chr 7:14,138,495...14,189,688
Ensembl chr 7:14,138,495...14,189,688
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Cc2d2a
coiled-coil and C2 domain containing 2A
ISO
ClinVar Annotator: match by term: DYSENCEPHALIA SPLANCHNOCYSTICA
ClinVar
PMID:18950740 PMID:19777577 PMID:22241855 PMID:22425360 PMID:23012439 PMID:24033266 PMID:25741868 PMID:26092869 PMID:26477546 PMID:26485645 PMID:27081510 PMID:27082236 PMID:28492532
NCBI chr14:71,895,128...71,979,452
Ensembl chr14:71,895,246...71,973,419
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Cep290
centrosomal protein 290
ISO
ClinVar Annotator: match by term: DYSENCEPHALIA SPLANCHNOCYSTICA ClinVar Annotator: match by term: Dysencephalia splachnocystica
ClinVar
PMID:16909394 PMID:17345604 PMID:17564974 PMID:20079931 PMID:20690115 PMID:21153841 PMID:21602930 PMID:21866095 PMID:23027964 PMID:23188109 PMID:23351400 PMID:23559409 PMID:25741868 PMID:26047050 PMID:26092869 PMID:28492532 PMID:28497568 PMID:29398085
NCBI chr 7:40,217,269...40,306,327
Ensembl chr 7:40,217,269...40,306,327
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Mks1
MKS transition zone complex subunit 1
ISO
ClinVar Annotator: match by term: Meckel syndrome type 1 DNA:splice-site mutations:intron:c.870-2A>G, c.1546+1G¿¿¿>A (human) DNA:deletion:intron:IVS15-7_35del (human) DNA:splice-site mutation:intron:c.515 + 6T>C (mouse) DNA:missense mutations, splice-site mutations:exon:c.417G>A, c.958G>A (p.V320I), c.1490G>A (p.R497K) (human) ClinVar Annotator: match by OMIM:249000 ClinVar Annotator: match by null
OMIM ClinVar
PMID:16415886 PMID:17185389 PMID:17377820 PMID:17397051 PMID:17437276 PMID:17935508 PMID:18327255 PMID:19430481 PMID:21068128 PMID:21258341 PMID:23351400 PMID:23736532 PMID:24033266 PMID:24608809 PMID:24886560 PMID:25741868 PMID:25966130 PMID:26092869 PMID:26490104 PMID:27377014 PMID:27570071 PMID:28224992 PMID:28492532 PMID:28497568 PMID:30718709 , PMID:23351400 , PMID:17935508 , PMID:19776033 , PMID:21045211 , PMID:17397051
RGD:11535078 , RGD:11535074 , RGD:11535068 , RGD:11535065 , RGD:11063991
NCBI chr10:75,149,814...75,160,481
Ensembl chr10:75,149,814...75,160,480
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Rpgrip1l
Rpgrip1-like
ISO
ClinVar Annotator: match by term: DYSENCEPHALIA SPLANCHNOCYSTICA ClinVar Annotator: match by term: Dysencephalia splachnocystica
ClinVar
PMID:17558409 PMID:19430481 PMID:25741868 PMID:28492532
NCBI chr19:17,115,266...17,208,055
Ensembl chr19:17,115,412...17,208,055
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Tmem107
transmembrane protein 107
ISO
ClinVar Annotator: match by term: Meckel syndrome type 1
ClinVar
PMID:25741868 PMID:27571260
NCBI chr10:55,653,694...55,656,270
Ensembl chr10:55,653,946...55,656,270
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Tmem67
transmembrane protein 67
ISO
ClinVar Annotator: match by term: DYSENCEPHALIA SPLANCHNOCYSTICA ClinVar Annotator: match by term: Dysencephalia splachnocystica
ClinVar
PMID:9375913 PMID:17377820 PMID:17397051 PMID:18414213 PMID:19058225 PMID:19466712 PMID:19508969 PMID:19540516 PMID:19574260 PMID:20232449 PMID:20607301 PMID:21068128 PMID:21866095 PMID:23559409 PMID:24033266 PMID:25741868 PMID:25920555 PMID:26035863 PMID:26092869 PMID:26729329 PMID:28431631 PMID:28492532 PMID:29891882
NCBI chr 5:25,666,138...25,721,056
Ensembl chr 5:25,666,137...25,721,072
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Tmem107
transmembrane protein 107
ISO
ClinVar Annotator: match by term: MECKEL SYNDROME 13
ClinVar OMIM
PMID:26123494 PMID:26595381
NCBI chr10:55,653,694...55,656,270
Ensembl chr10:55,653,946...55,656,270
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Tmem216
transmembrane protein 216
ISO
ClinVar Annotator: match by term: Meckel syndrome, type 2 ClinVar Annotator: match by term: Meckel syndrome type 2 ClinVar Annotator: match by OMIM:603194 DNA:missense,frameshift,nonsense mutations:cds,splice junction:
OMIM ClinVar
PMID:18414213 PMID:20036350 PMID:20301500 PMID:20512146 PMID:22282472 PMID:23351400 PMID:24033266 PMID:25741868 PMID:26092869 PMID:26467025 PMID:26673778 PMID:28492532 PMID:28497568 , PMID:20512146
RGD:11067331
NCBI chr 1:226,601,201...226,606,417
Ensembl chr 1:226,601,201...226,606,344
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Tmem67
transmembrane protein 67
ISO IAGP
ClinVar Annotator: match by term: MECKEL-GRUBER SYNDROME, TYPE 3 ClinVar Annotator: match by term: Meckel syndrome, type 3 ClinVar Annotator: match by term: Meckel syndrome type 3 DNA:deletion DNA:deletions, missense mutation, splice-site mutations: :multiple DNA:missense mutation:exon:p.P394L (rat) DNA:missense mutation:exon:p.R549C (c.1645C>T) (human) DNA:missense mutations: :p.M252T (c.755T>C), p.R441C (c.1392C>T) (human) DNA:missense mutations:exon: p.M252T (755T>C), p.R440Q (1319G>A), p.L966P (2897T>C) (human) DNA:missense mutations, splice-site mutation:exon:multiple ClinVar Annotator: match by OMIM:607361
OMIM ClinVar
PMID:2929661 PMID:9375913 PMID:16415887 PMID:16541367 PMID:17160906 PMID:17185389 PMID:17377820 PMID:17397051 PMID:18327255 PMID:18414213 PMID:19058225 PMID:19466712 PMID:19508969 PMID:19540516 PMID:19574260 PMID:20232449 PMID:20607301 PMID:21068128 PMID:21633164 PMID:21866095 PMID:22121117 PMID:23351400 PMID:23559409 PMID:25326635 PMID:25741868 PMID:25920555 PMID:26035863 PMID:26092869 PMID:26467025 PMID:26729329 PMID:28289063 PMID:28431631 PMID:28492532 PMID:28497568 PMID:28973083 PMID:29127258 PMID:29891882 PMID:29974258 , PMID:19211713 , PMID:16415887 , PMID:16415887 , PMID:26191240 , PMID:23351400 , PMID:17377820 , PMID:17397051
RGD:11535945 , RGD:11535082 , RGD:11535082 , RGD:11535080 , RGD:11535078 , RGD:11068761 , RGD:11063991
NCBI chr 5:25,666,138...25,721,056
Ensembl chr 5:25,666,137...25,721,072
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Cep290
centrosomal protein 290
ISO
ClinVar Annotator: match by term: Meckel syndrome, type 4 ClinVar Annotator: match by term: Meckel syndrome type 4 ClinVar Annotator: match by term: MECKEL-GRUBER SYNDROME, TYPE 4 ClinVar Annotator: match by OMIM:611134 DNA:frameshift mutation:exon:c.5489del (human)
OMIM ClinVar
PMID:16682970 PMID:16682973 PMID:16909394 PMID:17345604 PMID:17564967 PMID:17564974 PMID:17705300 PMID:18414213 PMID:19466712 PMID:19764032 PMID:20683928 PMID:20690115 PMID:21068128 PMID:21153841 PMID:21245082 PMID:21602930 PMID:21866095 PMID:22355252 PMID:22693042 PMID:23027964 PMID:23351400 PMID:23591405 PMID:23847139 PMID:23954617 PMID:24265693 PMID:25097241 PMID:25741868 PMID:25818971 PMID:26047050 PMID:26092869 PMID:26467025 PMID:26477546 PMID:26667666 PMID:27353947 PMID:28041643 PMID:28492532 PMID:28497568 PMID:29146704 PMID:29398085 PMID:29588463 PMID:30718709 PMID:31680349 PMID:31734136 , PMID:17705300
RGD:11070805
NCBI chr 7:40,217,269...40,306,327
Ensembl chr 7:40,217,269...40,306,327
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RGD1307947
similar to RIKEN cDNA C430008C19
ISO
ClinVar Annotator: match by term: Meckel syndrome, type 4
ClinVar
PMID:28492532
NCBI chr 7:40,304,964...40,315,408
Ensembl chr 7:40,304,988...40,316,532
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Tmem218
transmembrane protein 218
ISO
ClinVar Annotator: match by term: Meckel syndrome, type 4
ClinVar
NCBI chr 8:39,687,280...39,702,722
Ensembl chr 8:39,687,269...39,702,902
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Rpgrip1l
Rpgrip1-like
ISO
ClinVar Annotator: match by term: Meckel syndrome, type 5 ClinVar Annotator: match by term: Meckel syndrome type 5 ClinVar Annotator: match by OMIM:611561
OMIM ClinVar
PMID:17558409 PMID:18414213 PMID:19430481 PMID:21068128 PMID:23188109 PMID:24033266 PMID:25741868 PMID:27434533 PMID:28492532 PMID:29343940 PMID:29991045
NCBI chr19:17,115,266...17,208,055
Ensembl chr19:17,115,412...17,208,055
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Cc2d2a
coiled-coil and C2 domain containing 2A
ISO
ClinVar Annotator: match by term: Meckel syndrome type 6 ClinVar Annotator: match by term: Meckel syndrome, type 6 ClinVar Annotator: match by OMIM:612284 ClinVar Annotator: match by null
OMIM ClinVar
PMID:8253763 PMID:18414213 PMID:18513680 PMID:18950740 PMID:19466712 PMID:19777577 PMID:21068128 PMID:21370303 PMID:22241855 PMID:22995991 PMID:24360807 PMID:24706459 PMID:25741868 PMID:26092869 PMID:26467025 PMID:26729329 PMID:27081510 PMID:27082236 PMID:27894351 PMID:28492532 PMID:32488064
NCBI chr14:71,895,128...71,979,452
Ensembl chr14:71,895,246...71,973,419
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Cep290
centrosomal protein 290
ISO
ClinVar Annotator: match by term: Meckel syndrome type 6
ClinVar
PMID:16682970 PMID:16682973 PMID:17564967 PMID:18327255 PMID:18414213 PMID:21068128 PMID:21245082 PMID:22355252 PMID:22693042 PMID:23591405 PMID:23954617 PMID:25741868 PMID:25818971 PMID:26092869 PMID:27353947 PMID:28492532 PMID:30718709
NCBI chr 7:40,217,269...40,306,327
Ensembl chr 7:40,217,269...40,306,327
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Tctn2
tectonic family member 2
ISO
ClinVar Annotator: match by term: Meckel syndrome type 6
ClinVar
PMID:21462283 PMID:23169490 PMID:26729329
NCBI chr12:37,400,896...37,427,256
Ensembl chr12:37,363,906...37,425,596
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Kif14
kinesin family member 14
ISO
ClinVar Annotator: match by term: Meckel syndrome 12
ClinVar OMIM
PMID:24128419 PMID:25741868
NCBI chr13:53,350,073...53,421,992
Ensembl chr13:53,351,717...53,420,111
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Alx4
ALX homeobox 4
ISO
ClinVar Annotator: match by term: Enlarged parietal foramina CTD Direct Evidence: marker/mechanism
ClinVar CTD
PMID:11137991
NCBI chr 3:82,548,959...82,585,531
Ensembl chr 3:82,548,959...82,585,531
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Msx2
msh homeobox 2
ISO
ClinVar Annotator: match by term: Enlarged parietal foramina CTD Direct Evidence: marker/mechanism ClinVar Annotator: match by term: Parietal foramina
ClinVar CTD
PMID:7597092 PMID:8106171 PMID:8357019 PMID:8968743 PMID:9256341 PMID:11137991 PMID:18786927 PMID:23918290 PMID:23949913 PMID:27013732 PMID:27884935 PMID:28492532 PMID:28808027
NCBI chr17:11,683,862...11,689,527
Ensembl chr17:11,683,862...11,689,527
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Msx2
msh homeobox 2
ISO
ClinVar Annotator: match by null ClinVar Annotator: match by term: Parietal foramina 1
ClinVar OMIM
PMID:10742103 PMID:10767351 PMID:16222674 PMID:25741868 PMID:28492532
NCBI chr17:11,683,862...11,689,527
Ensembl chr17:11,683,862...11,689,527
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Alx4
ALX homeobox 4
ISO
ClinVar Annotator: match by term: Parietal foramina 2 ClinVar Annotator: match by OMIM:609597
OMIM ClinVar
PMID:11106354 PMID:11137991 PMID:16319823 PMID:22829454 PMID:24764194 PMID:28492532
NCBI chr 3:82,548,959...82,585,531
Ensembl chr 3:82,548,959...82,585,531
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Msx2
msh homeobox 2
ISO
ClinVar Annotator: match by null
OMIM ClinVar
PMID:14571277
NCBI chr17:11,683,862...11,689,527
Ensembl chr17:11,683,862...11,689,527
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Mtor
mechanistic target of rapamycin kinase
ISO
ClinVar Annotator: match by term: Smith-Kingsmore syndrome
OMIM ClinVar
PMID:23636326 PMID:24631838 PMID:25741868 PMID:25851998 PMID:26542245 PMID:26619011 PMID:27159400 PMID:27279227 PMID:27513193 PMID:27753196 PMID:27830187 PMID:28475857 PMID:28492532 PMID:28554332 PMID:32581362
NCBI chr 5:165,263,813...165,373,967
Ensembl chr 5:165,263,800...165,373,967
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Chrna7
cholinergic receptor nicotinic alpha 7 subunit
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:22473653
NCBI chr 1:123,897,341...124,039,263
Ensembl chr 1:123,899,657...124,039,196
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Fgfr1
Fibroblast growth factor receptor 1
ISO
RGD
PMID:21238647
RGD:11567270
NCBI chr16:71,265,390...71,319,046
Ensembl chr16:71,266,248...71,319,449
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Fgfr2
fibroblast growth factor receptor 2
ISO
RGD
PMID:21238647
RGD:11567270
NCBI chr 1:200,590,951...200,696,946
Ensembl chr 1:200,590,953...200,696,928
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Pcsk5
proprotein convertase subtilisin/kexin type 5
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:18519639
NCBI chr 1:236,031,988...236,313,858
Ensembl chr 1:236,031,988...236,313,858
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Plod1
procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1
ISO
ClinVar Annotator: match by term: Umbilical hernias
ClinVar
PMID:25741868
NCBI chr 5:164,720,629...164,747,071
Ensembl chr 5:164,720,587...164,747,083
Term paths to the root one shortest all shortest one longest all longest one shortest and longest all