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ONTOLOGY REPORT - ANNOTATIONS


Term:common variable immunodeficiency
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Accession:DOID:12177 term browser browse the term
Definition:Heterogeneous group of immunodeficiency syndromes characterized by hypogammaglobulinemia of most isotypes, variable B-cell defects, and the presence of recurrent bacterial infections.
Synonyms:exact_synonym: Acquired Hypogammaglobulinemia;   Common Variable Hypogammaglobulinemia;   Common Variable Hypogammaglobulinemias;   Common Variable Immune Deficiency;   Common Variable Immunodeficiencies;   IL21 DEFICIENCY;   Late-Onset Immunoglobulin Deficiencies;   acquired agammaglobulinemia;   acquired hypogammaglobulinemias;   common variable agammaglobulinemia;   late-onset immunoglobulin deficiency;   sporadic hypogammaglobulinemia
 narrow_synonym: COMMON VARIABLE IMMUNE DEFICIENCY, DOMINANT;   COMMON VARIABLE IMMUNE DEFICIENCY, RECESSIVE;   CVID
 primary_id: MESH:D017074
 alt_id: RDO:0007021
 xref: GARD:6140;   ICD10CM:D83;   ICD10CM:D83.9;   ICD9CM:279.06;   OMIM:PS607594;   ORDO:1572
For additional species annotation, visit the Alliance of Genome Resources.


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common variable immunodeficiency term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cd19 CD19 molecule JBrowse link 1 197,815,422 197,822,123 RGD:11554173
RGD:8554872
G Cd81 Cd81 molecule JBrowse link 1 216,237,663 216,253,460 RGD:11554173
G Cr2 complement C3d receptor 2 JBrowse link 13 113,890,274 113,927,824 RGD:11554173
G Dclre1c DNA cross-link repair 1C JBrowse link 17 78,782,512 78,812,140 RGD:11251730
G Fcgr2a Fc fragment of IgG receptor IIa JBrowse link 13 91,146,878 91,163,691 RGD:5147988
G Icos inducible T-cell co-stimulator JBrowse link 9 67,748,157 67,786,808 RGD:8554872
RGD:11554173
G Ikzf1 IKAROS family zinc finger 1 JBrowse link 14 91,782,281 91,867,828 RGD:11554173
G Il21 interleukin 21 JBrowse link 2 123,965,021 123,972,356 RGD:11554173
G Il21r interleukin 21 receptor JBrowse link 1 196,996,405 197,024,185 RGD:6892941
G Lrba LPS responsive beige-like anchor protein JBrowse link 2 185,590,983 186,110,491 RGD:13592920
G Mbl2 mannose binding lectin 2 JBrowse link 1 248,435,069 248,442,669 RGD:4889436
G Ms4a1 membrane spanning 4-domains A1 JBrowse link 1 227,429,241 227,441,492 RGD:11554173
G Nfkb1 nuclear factor kappa B subunit 1 JBrowse link 2 240,773,520 240,890,053 RGD:11554173
G Nfkb2 nuclear factor kappa B subunit 2 JBrowse link 1 266,050,634 266,059,277 RGD:11554173
G Pecam1 platelet and endothelial cell adhesion molecule 1 JBrowse link 10 94,850,971 94,913,202 RGD:6771226
G RT1-Bb RT1 class II, locus Bb JBrowse link 20 4,043,726 4,049,367 RGD:5147864
G Tnfrsf13b TNF receptor superfamily member 13B JBrowse link 10 47,399,834 47,422,907 RGD:8554872
RGD:11554173
G Tnfrsf13c TNF receptor superfamily member 13C JBrowse link 7 123,453,799 123,456,289 RGD:8554872
RGD:11554173
G Tnfsf12 TNF superfamily member 12 JBrowse link 10 56,290,780 56,300,137 RGD:8554872
autoimmune lymphoproliferative syndrome type 3 term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Prkcd protein kinase C, delta JBrowse link 16 6,655,131 6,675,746 RGD:7240710
RGD:8554872
Common Variable Immunodeficiency 1 term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Icos inducible T-cell co-stimulator JBrowse link 9 67,748,157 67,786,808 RGD:7240710
RGD:8554872
G Nfkb2 nuclear factor kappa B subunit 2 JBrowse link 1 266,050,634 266,059,277 RGD:8554872
Common Variable Immunodeficiency 10 term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nfkb2 nuclear factor kappa B subunit 2 JBrowse link 1 266,050,634 266,059,277 RGD:7240710
RGD:8554872
Common Variable Immunodeficiency 11 term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Il21 interleukin 21 JBrowse link 2 123,965,021 123,972,356 RGD:8554872
RGD:7240710
Common Variable Immunodeficiency 12 term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nfkb1 nuclear factor kappa B subunit 1 JBrowse link 2 240,773,520 240,890,053 RGD:8554872
RGD:7240710
Common Variable Immunodeficiency 13 term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ikzf1 IKAROS family zinc finger 1 JBrowse link 14 91,782,281 91,867,828 RGD:8554872
RGD:7240710
Common Variable Immunodeficiency 14 term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Irf2bp2 interferon regulatory factor 2 binding protein 2 JBrowse link 19 59,497,021 59,502,298 RGD:8554872
RGD:7240710
Common Variable Immunodeficiency 2 term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tnfrsf13b TNF receptor superfamily member 13B JBrowse link 10 47,399,834 47,422,907 RGD:7240710
RGD:8554872
Common Variable Immunodeficiency 3 term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cd19 CD19 molecule JBrowse link 1 197,815,422 197,822,123 RGD:7240710
RGD:8554872
Common Variable Immunodeficiency 4 term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aco2 aconitase 2 JBrowse link 7 123,102,493 123,145,608 RGD:8554872
G Ccdc134 coiled-coil domain containing 134 JBrowse link 7 123,362,471 123,376,930 RGD:8554872
G Cenpm centromere protein M JBrowse link 7 123,464,615 123,476,336 RGD:8554872
G Csdc2 cold shock domain containing C2 JBrowse link 7 123,168,811 123,183,336 RGD:8554872
G Desi1 desumoylating isopeptidase 1 JBrowse link 7 123,238,332 123,259,636 RGD:8554872
G Mei1 meiotic double-stranded break formation protein 1 JBrowse link 7 123,308,041 123,361,391 RGD:8554872
G Mir33 microRNA 33 JBrowse link 7 123,431,612 123,431,680 RGD:8554872
G Naga alpha-N-acetylgalactosaminidase JBrowse link 7 123,563,047 123,572,074 RGD:8554872
G Phf5a PHD finger protein 5A JBrowse link 7 123,095,286 123,101,851 RGD:8554872
G Pmm1 phosphomannomutase 1 JBrowse link 7 123,183,504 123,193,874 RGD:8554872
G Polr3h RNA polymerase III subunit H JBrowse link 7 123,146,248 123,156,558 RGD:8554872
G Rangap1 RAN GTPase activating protein 1 JBrowse link 7 122,939,266 122,967,178 RGD:8554872
G Septin3 septin 3 JBrowse link 7 123,506,535 123,526,542 RGD:8554872
G Shisa8 shisa family member 8 JBrowse link 7 123,440,163 123,445,613 RGD:8554872
G Snu13 small nuclear ribonucleoprotein 13 JBrowse link 7 123,282,754 123,287,721 RGD:8554872
G Srebf2 sterol regulatory element binding transcription factor 2 JBrowse link 7 123,381,082 123,438,605 RGD:8554872
G Tef TEF transcription factor, PAR bZIP family member JBrowse link 7 123,033,971 123,058,606 RGD:8554872
G Tnfrsf13c TNF receptor superfamily member 13C JBrowse link 7 123,453,799 123,456,289 RGD:7240710
RGD:8554872
G Tob2 transducer of ERBB2, 2 JBrowse link 7 123,079,520 123,088,240 RGD:8554872
G Wbp2nl WBP2 N-terminal like JBrowse link 7 123,531,657 123,548,574 RGD:8554872
G Xrcc6 X-ray repair cross complementing 6 JBrowse link 7 123,259,881 123,280,613 RGD:8554872
G Zc3h7b zinc finger CCCH-type containing 7B JBrowse link 7 122,978,999 123,027,166 RGD:8554872
Common Variable Immunodeficiency 5 term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ms4a1 membrane spanning 4-domains A1 JBrowse link 1 227,429,241 227,441,492 RGD:7240710
RGD:8554872
Common Variable Immunodeficiency 6 term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cd81 Cd81 molecule JBrowse link 1 216,237,663 216,253,460 RGD:7240710
RGD:8554872
Common Variable Immunodeficiency 7 term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cr2 complement C3d receptor 2 JBrowse link 13 113,890,274 113,927,824 RGD:8554872
RGD:7240710
Common Variable Immunodeficiency 8, with Autoimmunity term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Lrba LPS responsive beige-like anchor protein JBrowse link 2 185,590,983 186,110,491 RGD:7240710
RGD:8554872

Term paths to the root
Path 1
Term Annotations click to browse term
  disease 15603
    syndrome 5215
      primary immunodeficiency disease 957
        common variable immunodeficiency 42
          Common Variable Immunodeficiency 1 2
          Common Variable Immunodeficiency 10 1
          Common Variable Immunodeficiency 11 1
          Common Variable Immunodeficiency 12 1
          Common Variable Immunodeficiency 13 1
          Common Variable Immunodeficiency 14 1
          Common Variable Immunodeficiency 2 1
          Common Variable Immunodeficiency 3 1
          Common Variable Immunodeficiency 4 22
          Common Variable Immunodeficiency 5 1
          Common Variable Immunodeficiency 6 1
          Common Variable Immunodeficiency 7 1
          Common Variable Immunodeficiency 8, with Autoimmunity 1
          autoimmune lymphoproliferative syndrome type 3 1
Path 2
Term Annotations click to browse term
  disease 15603
    disease of anatomical entity 14934
      Immune & Inflammatory Diseases 3107
        immune system disease 2528
          primary immunodeficiency disease 957
            lymphoproliferative syndrome 605
              agammaglobulinemia 55
                common variable immunodeficiency 42
                  Common Variable Immunodeficiency 1 2
                  Common Variable Immunodeficiency 10 1
                  Common Variable Immunodeficiency 11 1
                  Common Variable Immunodeficiency 12 1
                  Common Variable Immunodeficiency 13 1
                  Common Variable Immunodeficiency 14 1
                  Common Variable Immunodeficiency 2 1
                  Common Variable Immunodeficiency 3 1
                  Common Variable Immunodeficiency 4 22
                  Common Variable Immunodeficiency 5 1
                  Common Variable Immunodeficiency 6 1
                  Common Variable Immunodeficiency 7 1
                  Common Variable Immunodeficiency 8, with Autoimmunity 1
                  autoimmune lymphoproliferative syndrome type 3 1
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.