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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.

Term:cryptococcosis
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Accession:DOID:12053 term browser browse the term
Definition:An opportunistic mycosis that results_in fungal infection and has_material_basis_in Cryptococcus neoformans or Cryptococcus gattii. (DO)
Synonyms:exact_synonym: Busse-Buschke's disease;   European cryptococcosis;   Toruloses;   cryptococcal infection;   cryptococcoses;   torula;   torulosis
 related_synonym: cryptococcus neoformans infection
 primary_id: MESH:D003453
 xref: EFO:0007229;   GARD:6218;   ICD10CM:B45;   ICD9CM:117.5;   NCI:C2967
For additional species annotation, visit the Alliance of Genome Resources.



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cryptococcosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Btk Bruton agammaglobulinemia tyrosine kinase exacerbates IMP RGD PMID:23820392 RGD:124715476 NCBI chr  X:133,443,083...133,484,366
Ensembl chr  X:133,443,085...133,484,319
JBrowse link
G Ccl2 chemokine (C-C motif) ligand 2 IEP mRNA, protein:increased expression:lung (mouse) RGD PMID:11714821 RGD:11528563 NCBI chr11:81,926,403...81,928,278
Ensembl chr11:81,926,397...81,928,279
JBrowse link
G Cd40 CD40 antigen treatment IMP RGD PMID:16552046 RGD:7248435 NCBI chr 2:164,897,535...164,913,574
Ensembl chr 2:164,897,547...164,914,868
JBrowse link
G Cd86 CD86 antigen IEP protein:increased expression:lung, dendritic cell (mouse) RGD PMID:16790753 RGD:4892554 NCBI chr16:36,389,318...36,486,439
Ensembl chr16:36,424,231...36,486,443
JBrowse link
G Chia1 chitinase, acidic 1 ISO protein:increased expression:lung (rat) RGD PMID:18482441 RGD:4990459 NCBI chr 3:106,020,698...106,039,434
Ensembl chr 3:106,020,545...106,039,436
JBrowse link
G Cxcl15 chemokine (C-X-C motif) ligand 15 IEP mRNA:increased expression:lung (mouse) RGD PMID:27596810 RGD:38549345 NCBI chr 5:90,942,393...90,950,926
Ensembl chr 5:90,942,393...90,950,926
JBrowse link
G Il23a interleukin 23, alpha subunit p19 severity IMP RGD PMID:16393998 PMID:22342846 RGD:39457936, RGD:39458042 NCBI chr10:128,132,009...128,133,953
Ensembl chr10:128,132,008...128,134,621
JBrowse link
G Il33 interleukin 33 IEP mRNA:increased expression:lung (mouse) RGD PMID:27596810 RGD:38549345 NCBI chr19:29,902,513...29,938,118
Ensembl chr19:29,902,514...29,938,118
JBrowse link
G Il4ra interleukin 4 receptor, alpha IMP RGD PMID:18954266 RGD:4890005 NCBI chr 7:125,151,443...125,178,646
Ensembl chr 7:125,151,292...125,178,646
JBrowse link
G Marco macrophage receptor with collagenous structure disease_progression IMP RGD PMID:28298522 RGD:41412191 NCBI chr 1:120,402,267...120,432,753
Ensembl chr 1:120,402,267...120,432,753
JBrowse link
G Sftpc surfactant associated protein C IEP mRNA:increased expression:lung (mouse) RGD PMID:27596810 RGD:38549345 NCBI chr14:70,758,381...70,761,521
Ensembl chr14:70,758,389...70,761,521
JBrowse link
cryptococcal meningitis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd274 CD274 antigen treatment ISO RGD PMID:29058791 RGD:41412178 NCBI chr19:29,339,428...29,365,495
Ensembl chr19:29,344,855...29,365,495
JBrowse link
G Mbl2 mannose-binding lectin (protein C) 2 susceptibility ISO associated with HIV Infections;DNA:polymorphism:cds: RGD PMID:21592999 RGD:12910861 NCBI chr19:30,210,306...30,217,087
Ensembl chr19:30,210,342...30,217,087
JBrowse link
G Pdcd1 programmed cell death 1 treatment ISO
IMP
RGD PMID:29058791 PMID:29058791 RGD:41412178, RGD:41412178 NCBI chr 1:93,966,027...93,980,278
Ensembl chr 1:93,966,027...93,980,278
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  disease 15352
    disease by infectious agent 2131
      Bacterial Infections and Mycoses 973
        fungal infectious disease 148
          cryptococcosis 14
            cryptococcal meningitis 3
Path 2
Term Annotations click to browse term
  disease 15352
    disease by infectious agent 2131
      Bacterial Infections and Mycoses 973
        fungal infectious disease 148
          systemic mycosis 140
            opportunistic mycosis 129
              cryptococcosis 14
                cryptococcal meningitis 3
paths to the root