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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.

Term:cryptococcosis
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Accession:DOID:12053 term browser browse the term
Definition:Infection with a fungus of the species CRYPTOCOCCUS NEOFORMANS.
Synonyms:exact_synonym: Busse-Buschke's disease;   Cryptococcoses;   European cryptococcosis;   Toruloses;   Torulosis;   cryptococcal infection;   torula
 related_synonym: cryptococcus neoformans infection
 primary_id: MESH:D003453;   RDO:0005302
 xref: GARD:6218;   ICD10CM:B45;   ICD9CM:117.5;   NCI:C2967
For additional species annotation, visit the Alliance of Genome Resources.


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cryptococcosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Btk Bruton tyrosine kinase exacerbates ISO RGD PMID:23820392 RGD:124715476 NCBI chr  X:105,360,922...105,390,580
Ensembl chr  X:105,360,922...105,390,580
JBrowse link
G Ccl2 C-C motif chemokine ligand 2 ISO mRNA, protein:increased expression:lung (mouse) RGD PMID:11714821 RGD:11528563 NCBI chr10:69,412,065...69,413,863
Ensembl chr10:69,412,017...69,413,870
JBrowse link
G Cd40 CD40 molecule treatment ISO RGD PMID:16552046 RGD:7248435 NCBI chr 3:161,519,789...161,534,943
Ensembl chr 3:161,519,743...161,534,704
JBrowse link
G Cd86 CD86 molecule ISO protein:increased expression:lung, dendritic cell (mouse) RGD PMID:16790753 RGD:4892554 NCBI chr11:67,060,305...67,117,990
Ensembl chr11:67,082,193...67,118,795
JBrowse link
G Chia chitinase, acidic IEP protein:increased expression:lung (rat) RGD PMID:18482441 RGD:4990459 NCBI chr 2:208,750,348...208,797,388
Ensembl chr 2:208,749,996...208,797,402
JBrowse link
G Il23a interleukin 23 subunit alpha severity ISO RGD PMID:16393998, PMID:22342846 RGD:39457936, RGD:39458042 NCBI chr 7:2,710,609...2,712,723
Ensembl chr 7:2,710,609...2,712,723
JBrowse link
G Il33 interleukin 33 ISO mRNA:increased expression:lung (mouse) RGD PMID:27596810 RGD:38549345 NCBI chr 1:248,112,611...248,147,030
Ensembl chr 1:248,132,090...248,147,029
JBrowse link
G Il4r interleukin 4 receptor ISO RGD PMID:18954266 RGD:4890005 NCBI chr 1:196,942,343...196,967,221
Ensembl chr 1:196,942,364...196,967,220
JBrowse link
G Marco macrophage receptor with collagenous structure disease_progression ISO RGD PMID:28298522 RGD:41412191 NCBI chr16:85,115,199...85,147,683
Ensembl chr16:85,115,201...85,135,859
JBrowse link
G Sftpc surfactant protein C ISO mRNA:increased expression:lung (mouse) RGD PMID:27596810 RGD:38549345 NCBI chr15:52,211,538...52,214,480
Ensembl chr15:52,211,544...52,214,616
JBrowse link
cryptococcal meningitis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd274 CD274 molecule treatment ISO RGD PMID:29058791 RGD:41412178 NCBI chr 1:247,519,890...247,539,659
Ensembl chr 1:247,519,939...247,537,943
JBrowse link
G Mbl2 mannose binding lectin 2 susceptibility ISO associated with HIV Infections;DNA:polymorphism:cds: RGD PMID:21592999 RGD:12910861 NCBI chr 1:248,435,069...248,442,669
Ensembl chr 1:248,723,397...248,729,962
JBrowse link
G Pdcd1 programmed cell death 1 treatment ISO RGD PMID:29058791, PMID:29058791 RGD:41412178, RGD:41412178 NCBI chr 9:101,305,742...101,319,937
Ensembl chr 9:101,307,764...101,319,845
Ensembl chr 9:101,307,764...101,319,845
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  disease 16937
    disease by infectious agent 1848
      Bacterial Infections and Mycoses 727
        fungal infectious disease 94
          cryptococcosis 13
            cryptococcal meningitis 3
Path 2
Term Annotations click to browse term
  disease 16937
    disease by infectious agent 1848
      Bacterial Infections and Mycoses 727
        fungal infectious disease 94
          systemic mycosis 87
            opportunistic mycosis 78
              cryptococcosis 13
                cryptococcal meningitis 3
paths to the root