RGD DISEASE ONTOLOGY - ANNOTATIONS
RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.
Term: clubfoot
Accession: DOID:11836
browse the term
Definition: A bone development disease where one or both are inclined inwards, axially rotated outwards, and pointing downwards with concomitant soft tissue abnormalities. (DO)
Synonyms: exact_synonym: CCF; Congenital Clubfeet; Congenital Clubfoot; Congenital Talipes Equinovarus; Congenital equinovarus; Equinovarus; Equinovarus deformity of foot; Idiopathic congenital talipes equinovarus; PITX1-RELATED CONDITION; clubfeet; congenital clubfoot with or without deficiency of long bones and/or mirror-image polydactyly; pie torcido; pie torcidos; talipes equinovarus
narrow_synonym: BILATERAL TALIPES EQUINOVARUS
primary_id: MESH:D003025
alt_id: OMIM:119800
xref: ICD10CM:Q66.0 ; ICD10CM:Q66.89 ; ICD9CM:754.51 ; NCI:C188148 ; NCI:C84641
For additional species annotation, visit the
Alliance of Genome Resources .
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AARS1
alanyl-tRNA synthetase 1
ISO
ClinVar Annotator: match by term: Clubfoot
ClinVar
PMID:25741868
NCBI chr 5:76,288,780...76,343,262
Ensembl chr 5:76,288,782...76,343,207
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ATP2B1
ATPase plasma membrane Ca2+ transporting 1
ISO
ClinVar Annotator: match by term: Clubfoot
ClinVar
PMID:25741868
NCBI chr15:30,547,009...30,674,094
Ensembl chr15:30,547,015...30,616,429
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BLTP1
bridge-like lipid transfer protein family member 1
ISO
ClinVar Annotator: match by term: Clubfoot
ClinVar
PMID:25741868 PMID:29290337 PMID:31680349
NCBI chr19:17,841,450...18,047,002
Ensembl chr19:17,841,967...18,044,276
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CC2D2A
coiled-coil and C2 domain containing 2A
ISO
ClinVar Annotator: match by term: Clubfoot
ClinVar
PMID:16199547 PMID:19466712 PMID:19777577 PMID:25741868 PMID:26092869 PMID:28492532 More...
NCBI chr 3:64,731,165...64,867,743
Ensembl chr 3:64,731,171...64,867,547
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CHST14
carbohydrate sulfotransferase 14
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:20004762
NCBI chr30:7,640,988...7,643,576
Ensembl chr30:7,640,637...7,642,778
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COL5A1
collagen type V alpha 1 chain
ISO
ClinVar Annotator: match by term: Clubfoot
ClinVar
PMID:25741868
NCBI chr 9:50,706,852...50,856,691
Ensembl chr 9:50,770,277...50,854,728
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CYP1A1
cytochrome P450 family 1 subfamily A member 1
ISO
DNA:missense mutation:exon:rs1048943 (1384A>G) (p.I462V) (human)
RGD
PMID:21254355
RGD:11576307
NCBI chr30:37,793,277...37,799,535
Ensembl chr30:37,793,508...37,796,866
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DARS2
aspartyl-tRNA synthetase 2, mitochondrial
ISO
ClinVar Annotator: match by term: Congenital Talipes Equinovarus
ClinVar
PMID:16199547 PMID:17384640 PMID:19592391 PMID:22843165 PMID:23065766 PMID:23652419 PMID:24005482 PMID:24407472 PMID:24566671 PMID:25525159 PMID:25741868 PMID:28492532 PMID:31589614 PMID:33977142 PMID:34426522 PMID:35379322 More...
NCBI chr 7:25,378,705...25,406,975
Ensembl chr 7:25,378,705...25,406,947
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FKBP8
FKBP prolyl isomerase 8
ISO
OMIM:119800
MouseDO
NCBI chr20:44,494,856...44,504,084
Ensembl chr20:44,489,219...44,598,497
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FLNB
filamin B
ISO
DNA:missense mutations:cds:c.4717G>T (p.D1573Y), c.1897A>G(p.M633V,c.2195A>G (p.Y732C)(human)
RGD
PMID:27395407
RGD:12791025
NCBI chr20:32,394,755...32,533,440
Ensembl chr20:32,396,165...32,533,275
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FRAS1
Fraser extracellular matrix complex subunit 1
ISO
OMIM:119800
MouseDO
NCBI chr32:2,558,442...2,993,199
Ensembl chr32:2,558,354...2,991,063
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GLI3
GLI family zinc finger 3
ISO
RGD
PMID:19925654
RGD:12738235
NCBI chr18:7,800,817...8,071,531
Ensembl chr18:7,801,394...8,068,132
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GRIP1
glutamate receptor interacting protein 1
ISO
OMIM:119800
MouseDO
NCBI chr10:8,801,023...9,187,684
Ensembl chr10:8,802,529...9,063,848
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HOXD12
homeobox D12
ISO
DNA:SNP:5' utr:rs847154 (human)
RGD
PMID:16331564
RGD:12743594
NCBI chr36:19,907,424...19,910,827
Ensembl chr36:19,907,442...19,908,408
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HOXD13
homeobox D13
ISO
DNA:SNP:exon:rs13392701 (human)
RGD
PMID:16331564
RGD:12743594
NCBI chr36:19,901,184...19,903,837
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INPP5E
inositol polyphosphate-5-phosphatase E
ISO
ClinVar Annotator: match by term: Clubfoot
ClinVar
PMID:15786477 PMID:19668216 PMID:25741868 PMID:26748598 PMID:27401686 PMID:28492532 PMID:29186038 PMID:33749171 PMID:34188062 More...
NCBI chr 9:49,061,014...49,071,474
Ensembl chr 9:49,061,968...49,070,191
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LMX1B
LIM homeobox transcription factor 1 beta
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:19147669
NCBI chr 9:56,542,844...56,625,609
Ensembl chr 9:56,542,826...56,625,530
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MTHFR
methylenetetrahydrofolate reductase
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:16936070
NCBI chr 2:84,445,526...84,457,435
Ensembl chr 2:84,380,919...84,536,818
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NSD2
nuclear receptor binding SET domain protein 2
ISO
ClinVar Annotator: match by term: CLUBFOOT, CONGENITAL, WITH OR WITHOUT DEFICIENCY OF LONG BONES AND/OR MIRROR-IMAGE POLYDACTYLY
ClinVar
PMID:25741868
NCBI chr 3:62,164,888...62,228,006
Ensembl chr 3:62,167,939...62,228,035
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PITX1
paired like homeodomain 1
ISO
ClinVar Annotator: match by term: CLUBFOOT, CONGENITAL, WITH OR WITHOUT DEFICIENCY OF LONG BONES AND/OR MIRROR-IMAGE POLYDACTYLY | ClinVar Annotator: match by term: Clubfoot | ClinVar Annotator: match by term: PITX1-related condition
OMIM ClinVar
PMID:18950742 PMID:22258522 PMID:25741868 PMID:28492532
NCBI chr11:23,069,731...23,075,085
Ensembl chr11:23,069,716...23,080,941
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PKD1
polycystin 1, transient receptor potential channel interacting
ISO
ClinVar Annotator: match by term: Clubfoot
ClinVar
PMID:25741868
NCBI chr 6:38,811,051...38,865,503
Ensembl chr 6:38,837,964...38,865,503
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RET
ret proto-oncogene
ISO
OMIM:119800
MouseDO
NCBI chr28:3,946,132...3,995,505
Ensembl chr28:3,947,232...3,994,210
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RYR1
ryanodine receptor 1
ISO
ClinVar Annotator: match by term: Congenital Talipes Equinovarus
ClinVar
PMID:18253 PMID:7299413 PMID:16380615 PMID:17033962 PMID:17365175 PMID:17483490 PMID:18253926 PMID:21911697 PMID:25741868 PMID:28492532 PMID:30611313 More...
NCBI chr 1:114,461,350...114,579,577
Ensembl chr 1:114,461,348...114,579,493
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TCIRG1
T cell immune regulator 1, ATPase H+ transporting V0 subunit a3
ISO
OMIM:119800
MouseDO
NCBI chr18:49,784,480...49,794,361
Ensembl chr18:49,784,490...49,794,317
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TNFRSF13B
TNF receptor superfamily member 13B
ISO
ClinVar Annotator: match by term: Congenital Talipes Equinovarus
ClinVar
PMID:16007086 PMID:16007087 PMID:16630947 PMID:16782407 PMID:17192819 PMID:17392797 PMID:17392798 PMID:17492055 PMID:17983875 PMID:18981294 PMID:19210517 PMID:19392801 PMID:19629655 PMID:19779048 PMID:20889194 PMID:21419480 PMID:21458042 PMID:21547394 PMID:21850030 PMID:22076597 PMID:22627058 PMID:22697072 PMID:22699762 PMID:22884984 PMID:22983507 PMID:23237420 PMID:24033266 PMID:24051380 PMID:25174870 PMID:25326637 PMID:25741868 PMID:26100089 PMID:26122175 PMID:26727773 PMID:27123465 PMID:27379089 PMID:27577878 PMID:28492532 PMID:29114388 PMID:29146883 PMID:29555771 PMID:29867916 PMID:29921932 PMID:30665703 PMID:30723478 PMID:31203817 PMID:31618753 PMID:31681265 PMID:32499645 PMID:32581362 PMID:33258288 More...
NCBI chr 5:42,448,976...42,483,792
Ensembl chr 5:42,449,053...42,482,740
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TRPV4
transient receptor potential cation channel subfamily V member 4
ISO
ClinVar Annotator: match by term: Clubfoot
ClinVar
PMID:2128891 PMID:20037587 PMID:20037588 PMID:21288981 PMID:21454511 PMID:24319099 PMID:24789864 PMID:25741868 PMID:28492532 More...
NCBI chr26:17,293,334...17,330,156
Ensembl chr26:17,262,100...17,330,165
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TTN
titin
ISO
ClinVar Annotator: match by term: Bilateral talipes equinovarus
ClinVar
PMID:23861362 PMID:25741868
NCBI chr36:22,146,870...22,417,858
Ensembl chr36:22,147,824...22,417,826
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UNC13C
unc-13 homolog C
ISO
ClinVar Annotator: match by term: Clubfoot
ClinVar
PMID:25741868
NCBI chr30:19,519,177...20,096,633
Ensembl chr30:19,518,232...20,095,094
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VANGL1
VANGL planar cell polarity protein 1
ISO
ClinVar Annotator: match by term: Clubfoot
ClinVar
PMID:25741868
NCBI chr17:53,174,080...53,227,616
Ensembl chr17:53,174,127...53,220,765
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WAPL
WAPL cohesin release factor
ISO
ClinVar Annotator: match by term: Clubfoot
ClinVar
PMID:25741868
NCBI chr 4:34,219,644...34,297,456
Ensembl chr 4:34,219,645...34,302,839
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PIEZO2
piezo type mechanosensitive ion channel component 2
ISO
ClinVar Annotator: match by term: Camptodactyly, cleft palate, and clubfoot | ClinVar Annotator: match by term: Gordon syndrome
OMIM ClinVar
PMID:8423615 PMID:11152147 PMID:24726473 PMID:25741868 PMID:27653382 PMID:27714920 PMID:27843126 PMID:28492532 PMID:30285720 PMID:31680123 More...
NCBI chr 7:76,477,628...76,918,660
Ensembl chr 7:76,478,928...76,919,723
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DSE
dermatan sulfate epimerase
ISO
ClinVar Annotator: match by term: Ehlers-Danlos syndrome, musculocontractural type 2
OMIM ClinVar
PMID:23704329 PMID:25703627 PMID:25741868 PMID:28492532
NCBI chr 1:56,787,809...56,868,037
Ensembl chr 1:56,787,256...56,867,716
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EIF4A3
eukaryotic translation initiation factor 4A3
ISO
ClinVar Annotator: match by term: Richieri Costa-Pereira syndrome
OMIM ClinVar
PMID:24360810
NCBI chr 9:1,582,950...1,593,893
Ensembl chr 9:1,582,993...1,593,892
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RBM10
RNA binding motif protein 10
ISO
ClinVar Annotator: match by term: TARP syndrome
OMIM ClinVar
PMID:5410571 PMID:20451169 PMID:21910224 PMID:24259342 PMID:25741868 PMID:28492532 PMID:30462380 PMID:32812661 More...
NCBI chr X:40,746,959...40,776,764
Ensembl chr X:40,747,178...40,776,742
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