RGD DISEASE ONTOLOGY - ANNOTATIONS
RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.
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C3
complement C3
ISO
protein:decreased expression:aqueous humour
RGD
PMID:21139973
RGD:7401271
NCBI chrNW_004955495:2,796,601...2,824,233
Ensembl chrNW_004955495:2,796,663...2,824,697
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Cdkn1a
cyclin dependent kinase inhibitor 1A
ISO
protein:increased expression:nucleus: mRNA,protein:increased expression:cornea,nucleus:
RGD
PMID:22956607
RGD:8661808
NCBI chrNW_004955437:6,254,638...6,261,278
Ensembl chrNW_004955437:6,254,309...6,261,479
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Clu
clusterin
ISO
RGD
PMID:18378577 PMID:22956607
RGD:8661808 RGD:8696020
NCBI chrNW_004955403:50,160,598...50,175,876
Ensembl chrNW_004955403:50,160,598...50,175,876
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Col8a2
collagen type VIII alpha 2 chain
ISO
OMIM:136800 | OMIM:610158 | OMIM:613267 | OMIM:613268 | OMIM:613269 | OMIM:613270 | OMIM:613271 | OMIM:615523
MouseDO
NCBI chrNW_004955452:14,127,654...14,149,582
Ensembl chrNW_004955452:14,127,630...14,155,212
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Loxhd1
lipoxygenase homology PLAT domains 1
ISO
DNA:missense mutations: :multiple
RGD
PMID:22341973
RGD:11072687
NCBI chrNW_004955402:31,985,616...32,144,040
Ensembl chrNW_004955402:31,985,583...32,144,040
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Tcf4
transcription factor 4
ISO
ClinVar Annotator: match by term: Corneal dystrophy, Fuchs endothelial, 3
OMIM ClinVar
PMID:18414213 PMID:18728071 PMID:25741868 PMID:26467025 PMID:28492532
NCBI chrNW_004955402:39,735,596...40,066,151
Ensembl chrNW_004955402:39,735,600...40,066,151
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Slc4a11
solute carrier family 4 member 11
ISO
ClinVar Annotator: match by term: Corneal dystrophy, Fuchs endothelial, 4
OMIM ClinVar
PMID:16767101 PMID:18024964 PMID:22072594 PMID:25741868 PMID:29327391
NCBI chrNW_004955415:14,123,021...14,133,437
Ensembl chrNW_004955415:14,120,301...14,131,989
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Zeb1
zinc finger E-box binding homeobox 1
ISO
ClinVar Annotator: match by term: Corneal dystrophy, Fuchs endothelial, 6
OMIM ClinVar
PMID:20036349 PMID:25741868 PMID:26622166 PMID:28492532 PMID:33116287
NCBI chrNW_004955429:23,011,627...23,198,188
Ensembl chrNW_004955429:23,010,790...23,198,250
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Agbl1
AGBL carboxypeptidase 1
ISO
ClinVar Annotator: match by term: Corneal dystrophy, Fuchs endothelial, 8
OMIM ClinVar
PMID:24094747 PMID:25741868
NCBI chrNW_004955416:17,885,757...18,686,124
Ensembl chrNW_004955416:18,130,605...18,686,108
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Col8a2
collagen type VIII alpha 2 chain
ISO
ClinVar Annotator: match by term: Corneal dystrophy, Fuchs endothelial, 1
OMIM ClinVar
PMID:399801 PMID:11689488 PMID:15914606 PMID:18024822 PMID:22002996 PMID:23422828 PMID:25741868 More...
NCBI chrNW_004955452:14,127,654...14,149,582
Ensembl chrNW_004955452:14,127,630...14,155,212
Term paths to the root one shortest all shortest one longest all longest one shortest and longest all
Path 1
disease
13559
sensory system disease
5778
eye disease
2680
corneal disease
186
corneal dystrophy
47
corneal endothelial dystrophy
10
Fuchs' endothelial dystrophy
9
Cornea Guttata with Anterior Polar Cataract
0
Corneal Dystrophy, Fuchs Endothelial, 3
1
Corneal Dystrophy, Fuchs Endothelial, 4
1
Corneal Dystrophy, Fuchs Endothelial, 5
0
Corneal Dystrophy, Fuchs Endothelial, 6
1
Corneal Dystrophy, Fuchs Endothelial, 7
0
Corneal Dystrophy, Fuchs Endothelial, 8
1
Corneal Dystrophy, Fuchs' Endothelial, 1
1
Corneal Dystrophy, Fuchs' Endothelial, 2
0
Fuchs Atrophia Gyrata Chorioideae et Retinae
0
Path 2
disease
13559
Pathological Conditions, Signs and Symptoms
10383
Signs and Symptoms
8462
Neurologic Manifestations
8142
sensory system disease
5778
eye disease
2680
Hereditary Eye Diseases
729
corneal dystrophy
47
corneal endothelial dystrophy
10
Fuchs' endothelial dystrophy
9
Cornea Guttata with Anterior Polar Cataract
0
Corneal Dystrophy, Fuchs Endothelial, 3
1
Corneal Dystrophy, Fuchs Endothelial, 4
1
Corneal Dystrophy, Fuchs Endothelial, 5
0
Corneal Dystrophy, Fuchs Endothelial, 6
1
Corneal Dystrophy, Fuchs Endothelial, 7
0
Corneal Dystrophy, Fuchs Endothelial, 8
1
Corneal Dystrophy, Fuchs' Endothelial, 1
1
Corneal Dystrophy, Fuchs' Endothelial, 2
0
Fuchs Atrophia Gyrata Chorioideae et Retinae
0