RGD DISEASE ONTOLOGY - ANNOTATIONS
RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.
G
C3
complement C3
ISO
protein:decreased expression:aqueous humour
RGD
PMID:21139973
RGD:7401271
NCBI chr19:5,708,211...5,753,178
Ensembl chr19:6,629,287...6,674,699
G
CDKN1A
cyclin dependent kinase inhibitor 1A
ISO
mRNA,protein:increased expression:cornea,nucleus: protein:increased expression:nucleus:
RGD
PMID:22956607
RGD:8661808
NCBI chr 6:36,241,405...36,250,032
Ensembl chr 6:37,436,990...37,445,599
G
CLU
clusterin
ISO
RGD
PMID:18378577 PMID:22956607
RGD:8661808 RGD:8696020
NCBI chr 8:26,867,973...26,884,838
Ensembl chr 8:24,070,053...24,083,523
G
COL8A2
collagen type VIII alpha 2 chain
ISO
OMIM:136800 | OMIM:610158 | OMIM:613267 | OMIM:613268 | OMIM:613269 | OMIM:613270 | OMIM:613271 | OMIM:615523
MouseDO
NCBI chr 1:35,361,336...35,391,173
Ensembl chr 1:36,537,869...36,540,541
G
LOXHD1
lipoxygenase homology PLAT domains 1
ISO
DNA:missense mutations: :multiple
RGD
PMID:22341973
RGD:11072687
NCBI chr18:39,756,531...39,936,317
Ensembl chr18:43,290,579...43,469,921
G
TCF4
transcription factor 4
ISO
ClinVar Annotator: match by term: Corneal dystrophy, Fuchs endothelial, 3
OMIM ClinVar
PMID:18414213 PMID:18728071 PMID:25741868 PMID:26467025 PMID:28492532
NCBI chr18:48,603,069...48,969,010
Ensembl chr18:51,938,357...52,352,030
G
SLC4A11
solute carrier family 4 member 11
ISO
ClinVar Annotator: match by term: Corneal dystrophy, Fuchs endothelial, 4
OMIM ClinVar
PMID:16767101 PMID:18024964 PMID:22072594 PMID:25741868 PMID:29327391
NCBI chr20:3,311,640...3,324,966
Ensembl chr20:3,074,804...3,086,157
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ZEB1
zinc finger E-box binding homeobox 1
ISO
ClinVar Annotator: match by term: Corneal dystrophy, Fuchs endothelial, 6
OMIM ClinVar
PMID:20036349 PMID:25741868 PMID:26622166 PMID:28492532 PMID:33116287
NCBI chr10:31,449,202...31,659,534
Ensembl chr10:32,046,491...32,253,550
G
AGBL1
AGBL carboxypeptidase 1
ISO
ClinVar Annotator: match by term: Corneal dystrophy, Fuchs endothelial, 8
OMIM ClinVar
PMID:24094747 PMID:25741868
NCBI chr15:64,774,408...65,603,628
Ensembl chr15:84,048,348...84,938,150
G
COL8A2
collagen type VIII alpha 2 chain
ISO
ClinVar Annotator: match by term: Corneal dystrophy, Fuchs endothelial, 1
OMIM ClinVar
PMID:399801 PMID:11689488 PMID:15914606 PMID:18024822 PMID:22002996 PMID:23422828 PMID:25741868 More...
NCBI chr 1:35,361,336...35,391,173
Ensembl chr 1:36,537,869...36,540,541
Term paths to the root one shortest all shortest one longest all longest one shortest and longest all
Path 1
disease
14759
sensory system disease
6115
eye disease
2861
corneal disease
200
corneal dystrophy
50
corneal endothelial dystrophy
10
Fuchs' endothelial dystrophy
9
Cornea Guttata with Anterior Polar Cataract
0
Corneal Dystrophy, Fuchs Endothelial, 3
1
Corneal Dystrophy, Fuchs Endothelial, 4
1
Corneal Dystrophy, Fuchs Endothelial, 5
0
Corneal Dystrophy, Fuchs Endothelial, 6
1
Corneal Dystrophy, Fuchs Endothelial, 7
0
Corneal Dystrophy, Fuchs Endothelial, 8
1
Corneal Dystrophy, Fuchs' Endothelial, 1
1
Corneal Dystrophy, Fuchs' Endothelial, 2
0
Fuchs Atrophia Gyrata Chorioideae et Retinae
0
Path 2
disease
14759
disease of anatomical entity
14463
nervous system disease
12318
sensory system disease
6115
eye disease
2861
Hereditary Eye Diseases
758
corneal dystrophy
50
corneal endothelial dystrophy
10
Fuchs' endothelial dystrophy
9
Cornea Guttata with Anterior Polar Cataract
0
Corneal Dystrophy, Fuchs Endothelial, 3
1
Corneal Dystrophy, Fuchs Endothelial, 4
1
Corneal Dystrophy, Fuchs Endothelial, 5
0
Corneal Dystrophy, Fuchs Endothelial, 6
1
Corneal Dystrophy, Fuchs Endothelial, 7
0
Corneal Dystrophy, Fuchs Endothelial, 8
1
Corneal Dystrophy, Fuchs' Endothelial, 1
1
Corneal Dystrophy, Fuchs' Endothelial, 2
0
Fuchs Atrophia Gyrata Chorioideae et Retinae
0