RGD DISEASE ONTOLOGY - ANNOTATIONS
RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.
Term: open-angle glaucoma
Accession: DOID:1067
browse the term
Definition: A glaucoma characterized by optic nerve damage resulting in progressive loss of visual field and increased pressure in the eye due to trabecular blockage. (DO)
Synonyms: exact_synonym: Compensative Glaucoma; Compensative Glaucomas; Glaucoma Simplex; Open Angle Glaucomas; Simple Glaucoma; compensated glaucoma; compensated glaucomas; glaucoma simplices; simple glaucomas; wide-angle glaucoma
narrow_synonym: Pigmentary Glaucoma; Pigmentary Glaucomas
primary_id: MESH:D005902
xref: EFO:0004190 ; EFO:0021425 ; ICD10CM:H40.1 ; ICD9CM:365.1 ; NCI:C34641
For additional species annotation, visit the
Alliance of Genome Resources .
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ADRB2
adrenoceptor beta 2
severity
ISO
DNA:polymprphism:cds:p.Q27E(human)
RGD
PMID:16785856
RGD:8548468
NCBI chr 2:150,032,649...150,035,591
Ensembl chr 2:150,033,579...150,040,731
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AFAP1
actin filament associated protein 1
susceptibility
ISO
DNA:SNPs: :rs4619890,rs4478172(human)
RGD
PMID:25173105
RGD:13673886
NCBI chr 8:3,070,031...3,198,319
Ensembl chr 8:3,069,959...3,202,533
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APOC3
apolipoprotein C3
ISO
protein:increased expression: aqueous humor:
RGD
PMID:23860758
RGD:10054092
NCBI chr 9:44,211,171...44,213,538
Ensembl chr 9:44,211,194...44,213,533
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APOE
apolipoprotein E
susceptibility
ISO
RGD
PMID:16110302
RGD:7495786
NCBI chr 6:51,373,113...51,375,333
Ensembl chr 6:51,372,292...51,375,330
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ATXN2
ataxin 2
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:26752265
NCBI chr14:32,656,537...32,772,082
Ensembl chr14:32,665,122...32,771,813
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CAV1
caveolin 1
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:20835238
NCBI chr18:29,648,120...29,682,451
Ensembl chr18:29,649,992...29,682,465
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CAV2
caveolin 2
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:20835238
NCBI chr18:29,699,012...29,707,277
Ensembl chr18:29,699,020...29,707,277
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CDKN2B
cyclin dependent kinase inhibitor 2B
disease_progression
ISO
DNA:SNP: :rs1063192 (human)
RGD
PMID:22840486
RGD:8548689
NCBI chr 1:200,666,250...200,770,880
Ensembl chr 1:200,761,004...200,766,056
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COL1A1
collagen type I alpha 1 chain
ISO
RGD
PMID:15161848
RGD:8552673
NCBI chr12:26,379,087...26,397,180
Ensembl chr12:26,379,090...26,397,004
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FNDC3B
fibronectin type III domain containing 3B
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:23291589
NCBI chr13:110,587,464...110,931,687
Ensembl chr13:110,587,463...110,928,465
G
FOXC1
forkhead box C1
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:26752265
NCBI chr 7:837,088...840,593
Ensembl chr 7:837,171...838,805
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GMDS
GDP-mannose 4,6-dehydratase
susceptibility
ISO
DNA:SNPs: :rs11969985,rs2761233(human)
RGD
PMID:25173105
RGD:13673886
NCBI chr 7:849,088...1,285,563
Ensembl chr 7:752,592...1,285,550
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IL10
interleukin 10
ISO
RGD
PMID:23788371
RGD:7364852
NCBI chr 9:67,400,727...67,405,941
Ensembl chr 9:67,400,728...67,405,378
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IL2
interleukin 2
ISO
protein:decreased expression:aqueous humor
RGD
PMID:21834929
RGD:5147910
NCBI chr 8:101,640,938...101,645,683
Ensembl chr 8:101,640,944...101,645,609
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MEIS2
Meis homeobox 2
susceptibility
ISO
DNA:SNP::rs28480457(human)
RGD
PMID:29452408
RGD:155630591
NCBI chr 1:134,013,642...134,223,013
Ensembl chr 1:134,013,820...134,223,012
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MTHFR
methylenetetrahydrofolate reductase
no_association susceptibility
ISO
DNA:SNPs: : 677C>T, 1298A>C (human) DNA:SNP: :677C>T(human)
RGD
PMID:15808177 PMID:17558844
RGD:7387252 RGD:7387254
NCBI chr 6:71,863,637...71,882,118
Ensembl chr 6:71,863,637...71,881,820
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MYOC
myocilin
ISO
ClinVar Annotator: match by term: Open-angle glaucoma
ClinVar
PMID:9535666 PMID:9772276 PMID:10196380 PMID:11004290 PMID:11133859 PMID:11803488 PMID:12356829 PMID:12442283 PMID:12872267 PMID:14764620 PMID:16636654 PMID:19145250 PMID:21552496 PMID:21850185 PMID:22736945 PMID:22933836 PMID:23922489 PMID:25741868 PMID:26633542 PMID:28492532 PMID:35196929 More...
NCBI chr 9:114,087,370...114,098,765
Ensembl chr 9:114,087,378...114,098,745
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OPTN
optineurin
no_association
ISO
DNA:missense mutations, SNP: :multiple DNA:polymorphism: :p.M98K (human) CTD Direct Evidence: marker/mechanism
RGD CTD
PMID:11834836 PMID:14627677 PMID:16020311 PMID:19096531 PMID:21059646 PMID:25096716 More...
RGD:1600995 RGD:6480509 RGD:6480510 RGD:6480513
NCBI chr10:48,532,029...48,582,952
Ensembl chr10:48,530,843...48,582,860
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PON1
paraoxonase 1
ISO
DNA:missense mutations:cds:p.L55M, p.Q192R (human)
RGD
PMID:16411107
RGD:8547552
NCBI chr 9:74,943,646...74,974,720
Ensembl chr 9:74,926,048...74,974,723
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PTGS2
prostaglandin-endoperoxide synthase 2
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:16330497
NCBI chr 9:127,850,164...127,858,866
Ensembl chr 9:127,850,015...127,858,884
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TAP1
transporter 1, ATP binding cassette subfamily B member
susceptibility
ISO
DNA:SNPs: :p. I333V, D637G (human)
RGD
PMID:15887980
RGD:6482266
NCBI chr 7:25,062,772...25,071,989
Ensembl chr 7:25,062,771...25,074,843
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TMCO1
transmembrane and coiled-coil domains 1
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:21532571
NCBI chr 4:84,961,912...85,011,139
Ensembl chr 4:84,961,819...85,017,820
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TNF
tumor necrosis factor
susceptibility
ISO
DNA:SNP: :-308G>A(rs1800629)(human)
RGD
PMID:20357201
RGD:7387247
NCBI chr 7:23,699,635...23,702,393
Ensembl chr 7:23,699,628...23,702,416
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TXNRD2
thioredoxin reductase 2
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:26752265
NCBI chr14:51,355,731...51,385,096
Ensembl chr14:51,356,831...51,383,262
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WDR36
WD repeat domain 36
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:21059646
NCBI chr 2:115,835,099...115,907,643
Ensembl chr 2:115,861,811...115,906,304
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ATL2
atlastin GTPase 2
ISO
ClinVar Annotator: match by term: Congenital glaucoma
ClinVar
PMID:9097971 PMID:9497261 PMID:19234632 PMID:28492532 PMID:31251480
NCBI chr 3:101,957,189...102,029,120
Ensembl chr 3:101,957,209...102,029,667
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CPAMD8
C3 and PZP like alpha-2-macroglobulin domain containing 8
ISO
ClinVar Annotator: match by term: Glaucoma 3, primary congenital, A
ClinVar
PMID:25741868
NCBI chr 2:60,636,025...60,742,120
Ensembl chr 2:60,636,047...60,742,137
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CYP1B1
cytochrome P450 family 1 subfamily B member 1
susceptibility
ISO
ClinVar Annotator: match by term: Congenital glaucoma | ClinVar Annotator: match by term: Glaucoma 3, primary congenital, A | ClinVar Annotator: match by term: Glaucoma, primary open angle, juvenile-onset DNA:polymorphisms:multiple (human) DNA:snp:cds:p.E387K (human) DNA:missense mutations:exons:p.G61E, p.R368H, p.D374N (human) DNA:deletion, snp:exons:g.4339delG, p.G61E (human)
OMIM ClinVar RGD
PMID:2782041 PMID:9097971 PMID:9463332 PMID:9497261 PMID:9536098 PMID:10227395 PMID:10426814 PMID:10655546 PMID:10739169 PMID:10910054 PMID:11184479 PMID:11403040 PMID:11527932 PMID:11558822 PMID:11774072 PMID:11854439 PMID:11980847 PMID:12036985 PMID:12372064 PMID:12525557 PMID:12598442 PMID:14507861 PMID:14635112 PMID:15037581 PMID:15255109 PMID:15342693 PMID:15621878 PMID:16199547 PMID:16384942 PMID:16688110 PMID:16735991 PMID:16735994 PMID:16862072 PMID:17164573 PMID:17224759 PMID:17363580 PMID:17563717 PMID:17576681 PMID:17591938 PMID:17718864 PMID:17893647 PMID:18055790 PMID:18070520 PMID:18227148 PMID:18414103 PMID:18470941 PMID:18537981 PMID:18622259 PMID:18852424 PMID:19195637 PMID:19204079 PMID:19234632 PMID:19236111 PMID:19247456 PMID:19528825 PMID:19536304 PMID:19597567 PMID:19643970 PMID:19744731 PMID:19793111 PMID:19807744 PMID:20057908 PMID:20151268 PMID:20198978 PMID:20664688 PMID:20827438 PMID:21081970 PMID:21168818 PMID:21306220 PMID:21572728 PMID:21600657 PMID:21815720 PMID:21850185 PMID:21854771 PMID:22004014 PMID:22128238 PMID:22878448 PMID:22942166 PMID:23028769 PMID:23218183 PMID:23218701 PMID:23922489 PMID:24033266 PMID:24123366 PMID:24227805 PMID:24281366 PMID:24940937 PMID:25018621 PMID:25091052 PMID:25109919 PMID:25261878 PMID:25333069 PMID:25527694 PMID:25580891 PMID:25646030 PMID:25741868 PMID:25741916 PMID:25826643 PMID:25950505 PMID:25952714 PMID:25978063 PMID:26550445 PMID:26550974 PMID:26997785 PMID:27060699 PMID:27243976 PMID:27268095 PMID:27270415 PMID:27272408 PMID:27408750 PMID:27508083 PMID:27535533 PMID:27777502 PMID:27820421 PMID:28192799 PMID:28384041 PMID:28425089 PMID:28448622 PMID:28492532 PMID:28620713 PMID:28644236 PMID:29142762 PMID:29556725 PMID:30108387 PMID:30484747 PMID:30520782 PMID:30653986 PMID:30662834 PMID:30788381 PMID:31024815 PMID:31251480 PMID:31453292 PMID:32224865 PMID:32476818 PMID:32499604 PMID:32510024 PMID:32830442 PMID:32832252 PMID:32860008 PMID:32883240 PMID:34956319 PMID:35085548 PMID:35170016 PMID:36076309 More...
RGD:7800657 RGD:7800670 RGD:7800680 RGD:7800689
NCBI chr 3:102,195,743...102,205,687
Ensembl chr 3:102,195,741...102,205,683
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FOXC1
forkhead box C1
ISO
OMIM:231300
MouseDO
NCBI chr 7:837,088...840,593
Ensembl chr 7:837,171...838,805
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GALM
galactose mutarotase
ISO
ClinVar Annotator: match by term: Congenital glaucoma
ClinVar
PMID:9097971 PMID:9497261 PMID:19234632 PMID:28492532 PMID:31251480
NCBI chr 3:101,617,521...101,682,821
Ensembl chr 3:101,617,526...101,753,125
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HNRNPLL
heterogeneous nuclear ribonucleoprotein L like
ISO
ClinVar Annotator: match by term: Congenital glaucoma
ClinVar
PMID:9097971 PMID:9497261 PMID:19234632 PMID:28492532 PMID:31251480
NCBI chr 3:101,753,330...101,795,356
Ensembl chr 3:101,753,292...101,802,062
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LTBP2
latent transforming growth factor beta binding protein 2
ISO
ClinVar Annotator: match by term: Glaucoma 3, primary congenital, A
ClinVar
PMID:19656777
NCBI chr 7:97,744,974...97,852,848
Ensembl chr 7:97,745,396...97,852,502
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MYOC
myocilin
ISO
ClinVar Annotator: match by term: Glaucoma 3, primary congenital, a, digenic
ClinVar
PMID:12447164 PMID:15025728 PMID:15723004 PMID:15733270 PMID:16288197 PMID:16466712 PMID:17563717 PMID:22194650 PMID:22736945 PMID:25741868 PMID:28492532 PMID:35196929 More...
NCBI chr 9:114,087,370...114,098,765
Ensembl chr 9:114,087,378...114,098,745
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PXDN
peroxidasin
ISO
ClinVar Annotator: match by term: Glaucoma 3, primary congenital, A
ClinVar
PMID:25741868
NCBI chr 3:132,306,288...132,362,853
Ensembl chr 3:132,306,447...132,362,841
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TYR
tyrosinase
ISO
OMIM:231300
MouseDO
NCBI chr 9:22,517,047...22,604,290
Ensembl chr 9:22,517,047...22,604,290
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FASTKD1
FAST kinase domains 1
ISO
ClinVar Annotator: match by term: Glaucoma 1, open angle, B
ClinVar
NCBI chr15:75,895,561...75,925,289
Ensembl chr15:75,895,526...75,929,017
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MYOC
myocilin
ISO
ClinVar Annotator: match by term: Glaucoma 1, open angle, E
ClinVar
PMID:9535666 PMID:9804137 PMID:10545602 PMID:10798654 PMID:10980537 PMID:11298682 PMID:11604506 PMID:11774072 PMID:12189160 PMID:14688426 PMID:15851979 PMID:16466712 PMID:17438518 PMID:17615537 PMID:18776955 PMID:19145250 PMID:21552496 PMID:21612213 PMID:21850185 PMID:22933836 PMID:25741868 PMID:28492532 PMID:35196929 More...
NCBI chr 9:114,087,370...114,098,765
Ensembl chr 9:114,087,378...114,098,745
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OPTN
optineurin
ISO
ClinVar Annotator: match by term: Glaucoma 1, open angle, E | ClinVar Annotator: match by term: Glaucoma 1, open angle, e
ClinVar
PMID:11834836 PMID:11978762 PMID:12208142 PMID:12939304 PMID:14597044 PMID:15226658 PMID:15312511 PMID:15326130 PMID:15370540 PMID:15547491 PMID:15557444 PMID:15761120 PMID:16148883 PMID:16199547 PMID:16205626 PMID:16619239 PMID:16885925 PMID:17293779 PMID:17359525 PMID:17389490 PMID:19145250 PMID:19172505 PMID:19672125 PMID:20428114 PMID:20671613 PMID:20981092 PMID:21217154 PMID:21220178 PMID:22402017 PMID:22708870 PMID:22722621 PMID:22892313 PMID:22995991 PMID:23062601 PMID:24683533 PMID:25333069 PMID:25741868 PMID:26467025 PMID:26566915 PMID:26740678 PMID:27485216 PMID:28492532 PMID:29411640 PMID:29525178 PMID:30519240 PMID:30739198 PMID:31108397 PMID:31198474 More...
NCBI chr10:48,532,029...48,582,952
Ensembl chr10:48,530,843...48,582,860
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ASB10
ankyrin repeat and SOCS box containing 10
ISO
ClinVar Annotator: match by term: Glaucoma 1, open angle, F
OMIM ClinVar
PMID:10037570 PMID:22156576 PMID:25741868 PMID:28492532
NCBI chr18:6,039,253...6,050,335
Ensembl chr18:6,039,507...6,049,861
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WDR36
WD repeat domain 36
ISO
ClinVar Annotator: match by term: Glaucoma 1, open angle, G | ClinVar Annotator: match by term: WDR36-related condition
OMIM ClinVar
PMID:15677485 PMID:16723468 PMID:17353431 PMID:17563723 PMID:18172102 PMID:19150991 PMID:22995991 PMID:25333069 PMID:25741868 PMID:28492532 More...
NCBI chr 2:115,835,099...115,907,643
Ensembl chr 2:115,861,811...115,906,304
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EFEMP1
EGF containing fibulin extracellular matrix protein 1
ISO
ClinVar Annotator: match by term: Glaucoma 1, open angle, H
OMIM ClinVar
PMID:25741868 PMID:26162006 PMID:28492532 PMID:34923728
NCBI chr 3:85,407,677...85,473,251
Ensembl chr 3:85,407,677...85,473,252
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NTF4
neurotrophin 4
ISO
ClinVar Annotator: match by term: Glaucoma 1, open angle, O
OMIM ClinVar
PMID:19765683 PMID:20215012 PMID:20463313 PMID:25741868 PMID:27535533
NCBI chr 6:54,271,244...54,288,846
Ensembl chr 6:54,271,246...54,274,092
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TBK1
TANK binding kinase 1
ISO
ClinVar Annotator: match by term: Glaucoma 1, open angle, P
ClinVar
PMID:24033266 PMID:25741868 PMID:28492532
NCBI chr 5:28,880,210...28,929,964
Ensembl chr 5:28,880,205...28,929,963
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CYP1B1
cytochrome P450 family 1 subfamily B member 1
ISO
DNA:insertion, deletions:exons, intron:g.1209_1214insC, g.1410_1422del, g.1389-?-1422+?del (human)
RGD
PMID:9097971
RGD:1599716
NCBI chr 3:102,195,743...102,205,687
Ensembl chr 3:102,195,741...102,205,683
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FLT1
fms related receptor tyrosine kinase 1
ISO
RGD
PMID:22426483
RGD:8549773
NCBI chr11:5,620,698...5,797,095
Ensembl chr11:5,621,212...5,795,264
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KDR
kinase insert domain receptor
ISO
RGD
PMID:22426483
RGD:8549773
NCBI chr 8:41,809,116...41,856,379
Ensembl chr 8:41,809,122...41,856,336
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CYP1B1
cytochrome P450 family 1 subfamily B member 1
ISO
ClinVar Annotator: match by term: Glaucoma of childhood
ClinVar
PMID:9497261 PMID:10227395 PMID:15342693 PMID:16735994 PMID:18227148 PMID:18414103 PMID:18537981 PMID:21081970 PMID:21600657 PMID:21854771 PMID:23218183 PMID:23218701 PMID:24033266 PMID:25109919 PMID:25741868 PMID:27243976 PMID:27272408 PMID:27820421 PMID:28492532 PMID:32832252 More...
NCBI chr 3:102,195,743...102,205,687
Ensembl chr 3:102,195,741...102,205,683
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EFEMP1
EGF containing fibulin extracellular matrix protein 1
ISO
ClinVar Annotator: match by term: Glaucoma of childhood
ClinVar
PMID:28492532 PMID:34923728
NCBI chr 3:85,407,677...85,473,251
Ensembl chr 3:85,407,677...85,473,252
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FOXC1
forkhead box C1
ISO
ClinVar Annotator: match by term: Glaucoma of childhood
ClinVar
PMID:32832252
NCBI chr 7:837,088...840,593
Ensembl chr 7:837,171...838,805
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LTBP2
latent transforming growth factor beta binding protein 2
ISO
ClinVar Annotator: match by term: Glaucoma of childhood
ClinVar
PMID:19361779 PMID:19656777 PMID:22025892 PMID:24033266 PMID:28492532
NCBI chr 7:97,744,974...97,852,848
Ensembl chr 7:97,745,396...97,852,502
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MYOC
myocilin
susceptibility
ISO
ClinVar Annotator: match by term: Glaucoma 1, open angle, A | ClinVar Annotator: match by term: Glaucoma of childhood | ClinVar Annotator: match by term: MYOC-Related Disorders | ClinVar Annotator: match by term: Primary open angle glaucoma juvenile onset 1 DNA:nonsense mutation, missense mutation, snps:exon, intron, 3' utr:multiple (human)
OMIM ClinVar RGD
PMID:3756132 PMID:6770678 PMID:8513321 PMID:9005853 PMID:9328473 PMID:9345106 PMID:9361308 PMID:9510647 PMID:9535666 PMID:9556305 PMID:9639450 PMID:9697688 PMID:9754180 PMID:9804137 PMID:10196380 PMID:10330365 PMID:10545602 PMID:10644174 PMID:10798654 PMID:10815160 PMID:10819638 PMID:10873982 PMID:10980537 PMID:11004290 PMID:11133859 PMID:11152659 PMID:11281418 PMID:11292420 PMID:11298682 PMID:11535458 PMID:11604506 PMID:11774072 PMID:11803488 PMID:11815346 PMID:12189160 PMID:12356829 PMID:12447164 PMID:12522550 PMID:12868033 PMID:12872267 PMID:14193667 PMID:14627955 PMID:14688426 PMID:14767915 PMID:15025728 PMID:15069026 PMID:15723004 PMID:15733270 PMID:15790895 PMID:15851979 PMID:16148883 PMID:16288197 PMID:16297911 PMID:16401791 PMID:16466712 PMID:16636654 PMID:17210859 PMID:17438518 PMID:17499207 PMID:17562996 PMID:17563717 PMID:17615537 PMID:17867509 PMID:17893664 PMID:18728751 PMID:18776955 PMID:19023451 PMID:19145250 PMID:19234343 PMID:20021252 PMID:21552496 PMID:21612213 PMID:21850185 PMID:22194650 PMID:22736945 PMID:22933836 PMID:23029558 PMID:23304066 PMID:23922489 PMID:24033266 PMID:24732711 PMID:24825108 PMID:25741868 PMID:25777973 PMID:26396484 PMID:26633542 PMID:27092720 PMID:27485216 PMID:28492532 PMID:30484747 PMID:32818018 PMID:35196929 PMID:35615698 More...
RGD:7401192
NCBI chr 9:114,087,370...114,098,765
Ensembl chr 9:114,087,378...114,098,745
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PAX6
paired box 6
ISO
MouseDO
NCBI chr 2:28,971,565...29,001,149
Ensembl chr 2:28,978,287...29,001,200
G
ADRB1
adrenoceptor beta 1
susceptibility
ISO
DNA:polymorphism:cds:p.R389G(human)
RGD
PMID:16785856
RGD:8548468
NCBI chr14:124,400,330...124,401,739
Ensembl chr14:124,400,330...124,401,739
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APOE
apolipoprotein E
susceptibility
ISO
DNA:polymorphism:exon:
RGD
PMID:16778644
RGD:7495800
NCBI chr 6:51,373,113...51,375,333
Ensembl chr 6:51,372,292...51,375,330
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BDNF
brain derived neurotrophic factor
ISO
protein:increased expression:tear:
RGD
PMID:19861219
RGD:8655604
NCBI chr 2:32,623,668...32,679,293
Ensembl chr 2:32,624,048...32,679,765
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CAV1
caveolin 1
no_association
ISO
DNA:SNP:promoter:rs4236601 (human)
RGD
PMID:23743525
RGD:8661774
NCBI chr18:29,648,120...29,682,451
Ensembl chr18:29,649,992...29,682,465
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CAV2
caveolin 2
susceptibility
ISO
DNA:SNP: :rs1052990 (human)
RGD
PMID:23743525
RGD:8661774
NCBI chr18:29,699,012...29,707,277
Ensembl chr18:29,699,020...29,707,277
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CRP
C-reactive protein, pentraxin-related
no_association
ISO
protein:increased expression:plasma:
RGD
PMID:16148587 PMID:22966842
RGD:9491770 RGD:9491771
NCBI chr 4:90,793,361...90,801,020
Ensembl chr 4:90,793,350...90,805,218
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EDN1
endothelin 1
ISO
protein:increased expression:plasma (human)
RGD
PMID:21946544
RGD:8661736
NCBI chr 7:8,752,018...8,758,354
Ensembl chr 7:8,751,695...8,758,348
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HSPD1
heat shock protein family D (Hsp60) member 1
ISO
RGD
PMID:20858111
RGD:10402863
NCBI chr15:101,360,355...101,373,498
Ensembl chr15:101,360,094...101,373,526
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MYOC
myocilin
susceptibility
ISO
DNA:Haplotype: :
RGD
PMID:16148883
RGD:7771548
NCBI chr 9:114,087,370...114,098,765
Ensembl chr 9:114,087,378...114,098,745
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OPTN
optineurin
susceptibility
ISO
DNA:SNPs:exon,introns: DNA:polymorphism:exon:p.M98K(human) DNA:polymorphisms, haplotype:exons:c.412G>A,603T>A(human)
RGD MouseDO
PMID:15226658 PMID:15557444 PMID:16148883
RGD:7771548 RGD:7775041 RGD:7775043
NCBI chr10:48,532,029...48,582,952
Ensembl chr10:48,530,843...48,582,860
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SLC1A1
solute carrier family 1 member 1
ISO
CTD Direct Evidence: marker/mechanism OMIM:606657
CTD MouseDO
PMID:28703795
NCBI chr 1:217,366,493...217,441,643
Ensembl chr 1:217,366,499...217,441,674
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SLC1A3
solute carrier family 1 member 3
ISO
OMIM:606657
MouseDO
NCBI chr16:21,873,691...21,965,315
Ensembl chr16:21,873,691...21,964,990
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SOD1
superoxide dismutase 1
ISO
protein:decreased expression:serum (human) OMIM:606657
RGD MouseDO
PMID:21421868
RGD:8655579
NCBI chr13:195,326,573...195,335,273
Ensembl chr13:195,326,649...195,337,729
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TLR4
toll like receptor 4
no_association susceptibility
ISO
DNA:polymorphisms:multiple: DNA:polymorphism,haplotype:multiple:
RGD
PMID:21921986 PMID:22831837
RGD:7794768 RGD:7794769
NCBI chr 1:258,044,610...258,054,641
Ensembl chr 1:258,044,610...258,058,970
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TNF
tumor necrosis factor
ISO
DNA:polymorphism, haplotype:promoter: -863C>A (human)
RGD
PMID:15557444
RGD:7775041
NCBI chr 7:23,699,635...23,702,393
Ensembl chr 7:23,699,628...23,702,416
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TP53
tumor protein p53
susceptibility
ISO
DNA:polymorphism:cds:p.R72P(rs1042522)(human)
RGD
PMID:20357201
RGD:7387247
NCBI chr12:52,939,643...52,953,786
Ensembl chr12:52,939,644...52,953,818
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COL18A1
collagen type XVIII alpha 1 chain
ISO
OMIM:600510
MouseDO
NCBI chr13:207,907,835...207,984,082
Ensembl chr13:207,940,948...207,982,938
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GPNMB
glycoprotein nmb
ISO
OMIM:600510
MouseDO
NCBI chr 9:92,037,428...92,071,501
Ensembl chr 9:92,037,509...92,071,499
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ACVR1
activin A receptor type 1
ISO
DNA:SNP:3'utr: (rs12997)
RGD
PMID:33443061
RGD:329328928
NCBI chr15:64,749,478...64,891,653
Ensembl chr15:64,750,796...64,891,544
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ADAMTS10
ADAM metallopeptidase with thrombospondin type 1 motif 10
ISO
Glaucoma, primary open angle, ADAMTS10-related
OMIA
PMID:924743 PMID:1428571 PMID:2764345 PMID:2764346 PMID:2925324 PMID:3710885 PMID:7212410 PMID:7325430 PMID:7720807 PMID:18435660 PMID:21379321 PMID:22524196 PMID:23422823 PMID:23518772 PMID:25372548 PMID:26277300 PMID:26456751 PMID:27212875 PMID:27271467 PMID:27681326 PMID:29708978 PMID:36855027 PMID:37582787 PMID:38130820 More...
NCBI chr 2:70,734,234...70,751,205
Ensembl chr 2:70,730,172...70,751,837
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ADAMTS17
ADAM metallopeptidase with thrombospondin type 1 motif 17
ISO
Glaucoma, primary open angle, ADAMTS17-related
OMIA
PMID:26277300 PMID:26456751 PMID:26474315 PMID:26683476 PMID:26945802 PMID:27192202 PMID:27681326 PMID:28176809 PMID:29287154 PMID:31131111 PMID:37582787 More...
NCBI chr 1:138,619,701...139,015,681
Ensembl chr 1:138,619,706...139,015,473
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ADIPOQ
adiponectin, C1Q and collagen domain containing
ISO
DNA:SNP: :rs2241766 (human)
RGD
PMID:22553514
RGD:8547563
NCBI chr13:124,633,906...124,646,237
Ensembl chr13:124,633,685...124,646,646
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ADRB2
adrenoceptor beta 2
onset
ISO
DNA:polymprphism:cds:p.R16G(human)
RGD
PMID:16785856
RGD:8548468
NCBI chr 2:150,032,649...150,035,591
Ensembl chr 2:150,033,579...150,040,731
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APOE
apolipoprotein E
susceptibility no_association
ISO
DNA:polymorphism:exon: DNA:polymorphisms:promoter:
RGD
PMID:15525904 PMID:17706090
RGD:7495787 RGD:7771556
NCBI chr 6:51,373,113...51,375,333
Ensembl chr 6:51,372,292...51,375,330
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BDNF
brain derived neurotrophic factor
ISO
protein:decreased expression:serum:
RGD
PMID:21076359
RGD:8655612
NCBI chr 2:32,623,668...32,679,293
Ensembl chr 2:32,624,048...32,679,765
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CAMK1D
calcium/calmodulin dependent protein kinase ID
ISO
ClinVar Annotator: match by term: Primary open angle glaucoma
ClinVar
PMID:28492532
NCBI chr10:59,199,541...59,630,191
Ensembl chr10:59,204,724...59,630,285
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CARD10
caspase recruitment domain family member 10
ISO
ClinVar Annotator: match by term: Primary open angle glaucoma
ClinVar
PMID:27896285
NCBI chr 5:10,290,697...10,317,224
Ensembl chr 5:10,284,139...10,316,720
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CAV1
caveolin 1
no_association
ISO
DNA:SNP:promoter:rs4236601 (human) DNA:SNPs: :multiple
RGD
PMID:20835238 PMID:22876122 PMID:24572674
RGD:8661770 RGD:8661776 RGD:8661783
NCBI chr18:29,648,120...29,682,451
Ensembl chr18:29,649,992...29,682,465
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CAV2
caveolin 2
ISO
DNA:SNPs: :rs10278782, rs1052990 (human)
RGD
PMID:24572674
RGD:8661770
NCBI chr18:29,699,012...29,707,277
Ensembl chr18:29,699,020...29,707,277
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CDKN1A
cyclin dependent kinase inhibitor 1A
no_association susceptibility
ISO
DNA:polymorphism:cds:p.S31R(human)
RGD
PMID:14738489 PMID:15807891
RGD:8661806 RGD:8661807
NCBI chr 7:32,354,776...32,363,771
Ensembl chr 7:32,359,455...32,363,761
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COL6A3
collagen type VI alpha 3 chain
ISO
DNA:SNP:CDS:D563, rs112913396 (human)
RGD
PMID:34143713
RGD:401851036
NCBI chr15:137,011,549...137,103,687
Ensembl chr15:137,011,433...137,103,709
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CYP1B1
cytochrome P450 family 1 subfamily B member 1
severity susceptibility
ISO
DNA:snp:cds:p.N453S (human) ClinVar Annotator: match by term: Primary open angle glaucoma DNA:snp:cds:p.L432V (human) DNA:snp, missense mutations, haplotype:promoter, cds:multiple (human) DNA:missense mutations:exons:p.P193L, p.E229K, p.M292K (human)
RGD ClinVar
PMID:10655546 PMID:15342693 PMID:16319821 PMID:17563717 PMID:18055790 PMID:18470941 PMID:18483560 PMID:19234632 PMID:22004014 PMID:24281366 PMID:25741868 PMID:26550445 PMID:27508083 PMID:27777502 PMID:28492532 PMID:30520782 More...
RGD:7800658 RGD:7800664 RGD:7800695 RGD:7800696
NCBI chr 3:102,195,743...102,205,687
Ensembl chr 3:102,195,741...102,205,683
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EDN1
endothelin 1
ISO
protein:increased expression:plasma (human)
RGD
PMID:22406080
RGD:8661676
NCBI chr 7:8,752,018...8,758,354
Ensembl chr 7:8,751,695...8,758,348
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ELN
elastin
ISO
RGD
PMID:1526740
RGD:9585735
NCBI chr 3:11,214,194...11,245,891
Ensembl chr 3:11,214,205...11,244,897
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ESR2
estrogen receptor 2
severity
ISO
DNA:SNPs, haplotypes DNA:snps:introns: IVS3 T>C, IVS8 A>G (rs1256031, rs4986938) (human)
RGD
PMID:18195227 PMID:20399928
RGD:8553056 RGD:8694092
NCBI chr 1:193,823,666...193,907,330
Ensembl chr 1:193,829,560...193,906,565
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GLUL
glutamate-ammonia ligase
ISO
protein:increases expression:aqueous humor
RGD
PMID:22974818
RGD:401794589
NCBI chr 9:123,751,551...123,762,575
Ensembl chr 9:123,751,548...123,762,547
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GUCY1A1
guanylate cyclase 1 soluble subunit alpha 1
ISO
OMIM:137760
MouseDO
NCBI chr 8:44,448,758...44,520,737
Ensembl chr 8:44,449,290...44,518,135
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LAMB2
laminin subunit beta 2
ISO
DNA:SNP:CDS:E987K, rs34759087 (human)
RGD
PMID:34143713
RGD:401851036
NCBI chr13:31,738,282...31,750,623
Ensembl chr13:31,738,286...31,750,833
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LOC100510975
coiled-coil domain-containing protein 3
ISO
ClinVar Annotator: match by term: Primary open angle glaucoma
ClinVar
PMID:28492532
NCBI chr10:59,052,979...59,144,791
Ensembl chr10:59,052,915...59,144,797
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LOXL1
lysyl oxidase like 1
no_association
ISO
DNA:SNP, haplotype: :rs1048661, rs2165241, rs3825942 (human) DNA:SNPs: :rs1048661, rs2165241, rs3825942 (human)
RGD
PMID:18223248 PMID:19098994
RGD:7387330 RGD:7394723
NCBI chr 7:59,481,410...59,505,161
Ensembl chr 7:59,481,412...59,505,149
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LTBP2
latent transforming growth factor beta binding protein 2
ISO
ClinVar Annotator: match by term: Primary open angle glaucoma
ClinVar
PMID:23401661 PMID:25741868 PMID:26425313 PMID:28492532
NCBI chr 7:97,744,974...97,852,848
Ensembl chr 7:97,745,396...97,852,502
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MBL2
mannose binding lectin 2
ISO
protein:increased expression:serum:
RGD
PMID:22335808
RGD:8693705
NCBI chr14:97,103,926...97,107,635
Ensembl chr14:97,102,823...97,108,083
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MCM10
minichromosome maintenance 10 replication initiation factor
ISO
ClinVar Annotator: match by term: Primary open angle glaucoma
ClinVar
PMID:28492532
NCBI chr10:48,481,292...48,523,921
Ensembl chr10:48,480,705...48,538,952
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MMP1
matrix metallopeptidase 1
no_association
ISO
DNA:SNP:promoter:rs1799750 (human) DNA:insertion:promoter:g.-1607insG rs1799750 (human)
RGD
PMID:20808730 PMID:23441116
RGD:8549724 RGD:8549725
NCBI chr 9:33,411,738...33,420,205
Ensembl chr 9:33,411,065...33,420,076
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MMP9
matrix metallopeptidase 9
no_association
ISO
DNA:insertion: :p.Q279R (rs17576) (human)
RGD
PMID:20808730
RGD:8549725
NCBI chr17:48,179,690...48,186,782
Ensembl chr17:48,179,671...48,186,788
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MYOC
myocilin
severity susceptibility no_association
ISO
DNA:snp:promoter:g.-1000C>G (human) ClinVar Annotator: match by term: Primary open angle glaucoma DNA:snps, deletion:cds:p.G326S, p.T286R, p.Y453MfsX11 (human) DNA:snp:cds:pT377M (human) DNA:snp:cds:p.G367R (human) DNA:snps:cds:multiple (human) DNA:snps:cds:p.G12R, p.V53A, p.T353I (human)
RGD ClinVar
PMID:9005853 PMID:9639450 PMID:10815160 PMID:11004290 PMID:11292420 PMID:11535458 PMID:11595024 PMID:11803488 PMID:11815346 PMID:12189160 PMID:12215093 PMID:12522550 PMID:12872267 PMID:16431959 PMID:17562996 PMID:17615537 PMID:19023451 PMID:19145250 PMID:20021252 PMID:21655360 PMID:22879734 PMID:22933836 PMID:23029558 PMID:23304066 PMID:24732711 PMID:25741868 PMID:26396484 PMID:28492532 More...
RGD:1600842 RGD:7401163 RGD:7401168 RGD:7401170 RGD:7401189 RGD:7401240 RGD:7401245
NCBI chr 9:114,087,370...114,098,765
Ensembl chr 9:114,087,378...114,098,745
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NOS3
nitric oxide synthase 3
susceptibility no_association
ISO
DNA:duplication:intron:IVS4?-?+27 (human) DNA:snp:promoter:g.-690C>T (human) associated with Hypertension;DNA:snp:promoter:g.-786T>C (rs2070744) (human) DNA:snp:intron:g.IVS15+1759C>A (rs3918188) (human) DNA:snps, haplotype:promoter, intron:g.-457C>T, g.IVS5+1182G>A (rs11771443, rs3793342) (human) High Tension;DNA:snps:promoter, intron:g.-786T>C, g.IVS15+1759C>A (rs3918188) (human) DNA:snps, haplotype:promoter, cds:g.-786T>C, p.E298D (human)
RGD
PMID:9493554 PMID:19815736 PMID:20069064 PMID:21245953 PMID:21670344 PMID:22561696 More...
RGD:7771542 RGD:7771543 RGD:7771573 RGD:7771575 RGD:7775039 RGD:7775055
NCBI chr18:6,209,218...6,228,912
Ensembl chr18:6,209,158...6,228,943
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OGG1
8-oxoguanine DNA glycosylase
ISO
DNA:SNP: :p.S326C (human)
RGD
PMID:23499241
RGD:8657152
NCBI chr13:66,038,669...66,045,478
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OPA1
OPA1 mitochondrial dynamin like GTPase
no_association
ISO
DNA:polymorphism:intron:IVS8+4C>T (human) DNA:SNPs:exons, introns:multiple DNA:SNPs: :rs166850, rs10451941 (human) mRNA:decreased expression:blood, leukocyte
RGD
PMID:16785854 PMID:17188046 PMID:18079692 PMID:21552501
RGD:7800685 RGD:7800713 RGD:7800718 RGD:7800721
NCBI chr13:130,624,771...130,718,345
Ensembl chr13:130,624,796...130,719,083
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OPTN
optineurin
no_association susceptibility
ISO
DNA:SNPs:cds:p.T34T,E50K,M98K,R545Q, 691_692insAG, ClinVar Annotator: match by term: Primary open angle glaucoma DNA:polymorphisms, haplotype:exons:c.412G>A,603T>A(human) DNA:polymorphism:exon:p.M98K(human)
RGD ClinVar OMIM
PMID:9536098 PMID:11834836 PMID:11978762 PMID:12208142 PMID:12789137 PMID:12939304 PMID:14597044 PMID:15226658 PMID:15312511 PMID:15326130 PMID:15370540 PMID:15547491 PMID:15557444 PMID:15761120 PMID:16148883 PMID:16199547 PMID:16205626 PMID:16358725 PMID:16619239 PMID:16681888 PMID:16885925 PMID:16972651 PMID:17122126 PMID:17293779 PMID:17359525 PMID:17389490 PMID:17576681 PMID:17615537 PMID:19096531 PMID:19145250 PMID:19172505 PMID:19672125 PMID:19710941 PMID:20388642 PMID:20428114 PMID:20671613 PMID:20981092 PMID:21074290 PMID:21217154 PMID:21220178 PMID:21408173 PMID:21550138 PMID:21613650 PMID:21802176 PMID:21852022 PMID:22366792 PMID:22402017 PMID:22708870 PMID:22722621 PMID:22892313 PMID:22995991 PMID:23062601 PMID:23138764 PMID:23357852 PMID:23447461 PMID:24683533 PMID:24983867 PMID:25333069 PMID:25382069 PMID:25588603 PMID:25640679 PMID:25681989 PMID:25741868 PMID:25741905 PMID:25943890 PMID:26203661 PMID:26303227 PMID:26467025 PMID:26503823 PMID:26566915 PMID:26740678 PMID:27485216 PMID:27620379 PMID:28089114 PMID:28492532 PMID:28882891 PMID:29411640 PMID:29525178 PMID:29525180 PMID:29540704 PMID:29558868 PMID:29650794 PMID:29895397 PMID:30519240 PMID:30672142 PMID:30739198 PMID:31000212 PMID:31108397 PMID:31198474 PMID:31759189 PMID:31788332 PMID:31838784 PMID:32028661 PMID:32397312 PMID:32579787 PMID:32893042 PMID:33770234 PMID:35896380 PMID:36133075 PMID:36570531 More...
RGD:7775041 RGD:7775043 RGD:7775049
NCBI chr10:48,532,029...48,582,952
Ensembl chr10:48,530,843...48,582,860
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PON1
paraoxonase 1
susceptibility
ISO
DNA:snp:cds:p.Q192R (rs662) (human)
RGD
PMID:22553514
RGD:8547563
NCBI chr 9:74,943,646...74,974,720
Ensembl chr 9:74,926,048...74,974,723
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SOD2
superoxide dismutase 2
susceptibility
ISO
DNA:polymorphism: :rs2842980(human)
RGD
PMID:23638916
RGD:8158079
NCBI chr 1:7,679,352...7,689,564
Ensembl chr 1:7,679,352...7,689,560
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TBK1
TANK binding kinase 1
ISO
ClinVar Annotator: match by term: Primary open angle glaucoma
ClinVar
PMID:25700176 PMID:25741868 PMID:25803835 PMID:26476236 PMID:26581300 PMID:28492532 More...
NCBI chr 5:28,880,210...28,929,964
Ensembl chr 5:28,880,205...28,929,963
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THBS1
thrombospondin 1
ISO
DNA:SNP:CDS:N700S, rs2228262 (human)
RGD
PMID:34143713
RGD:401851036
NCBI chr 1:131,728,781...131,746,098
Ensembl chr 1:131,728,784...131,746,115
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TLR4
toll like receptor 4
susceptibility
ISO
DNA:polymorphism,haplotype:multiple:
RGD
PMID:22831837
RGD:7794768
NCBI chr 1:258,044,610...258,054,641
Ensembl chr 1:258,044,610...258,058,970
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TNF
tumor necrosis factor
ISO
DNA:polymorphisms, haplotype:promoter:-857C>T, -863C>A (human)
RGD
PMID:15557444
RGD:7775041
NCBI chr 7:23,699,635...23,702,393
Ensembl chr 7:23,699,628...23,702,416
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TP53
tumor protein p53
susceptibility
ISO
DNA:polymorphism:cds:p.R72P(human)
RGD
PMID:23049825
RGD:8547822
NCBI chr12:52,939,643...52,953,786
Ensembl chr12:52,939,644...52,953,818
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WDR36
WD repeat domain 36
susceptibility no_association
ISO
DNA:polymorphisms:cds:p.D658G, N355S, A449T and R529Q (human) ClinVar Annotator: match by term: Primary open angle glaucoma DNA:polymorphism:cds:p.D658G
RGD ClinVar
PMID:15677485 PMID:16876519 PMID:25741868 PMID:28492532
RGD:8548465 RGD:8548466
NCBI chr 2:115,835,099...115,907,643
Ensembl chr 2:115,861,811...115,906,304
Term paths to the root one shortest all shortest one longest all longest one shortest and longest all