legionellosis - Ontology Report - Rat Genome Database

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RGD DISEASE ONTOLOGY - ANNOTATIONS

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RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.

Term:	legionellosis	go back to main search page
Accession:	DOID:10458	browse the term
Definition:	A primary bacterial infectious disease that results_in infection located_in respiratory tract, has_material_basis_in Legionella pneumophila, which is transmitted_by inhalation of droplets containing bacteria. The symptoms include dry cough, fever, headache and diarrhea. (DO)
Synonyms:	exact_synonym:	legionella infection; legionelloses
	primary_id:	MESH:D007876
	xref:	EFO:0007342; NCI:C128334
For additional species annotation, visit the Alliance of Genome Resources.

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Rat (15) Mouse (15) Human (18) Chinchilla (11) Bonobo (14) Dog (12) Squirrel (9) Pig (14) Green Monkey (13) Naked Mole-rat (10) All
Genes (12)

Legionnaires' disease

term browser

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

G

adenosine deaminase

protein:increased expression:serum

NCBI chr24:32,083,786...32,119,810
Ensembl chr24:32,083,931...32,111,160

G

C-X3-C motif chemokine ligand 1

NCBI chr 2:59,022,794...59,032,095
Ensembl chr 2:59,022,794...59,032,095

G

C-X-C motif chemokine receptor 2

NCBI chr37:24,831,351...24,846,387
Ensembl chr37:24,843,171...24,844,247

G

interferon gamma

CTD Direct Evidence: therapeutic

NCBI chr10:10,406,866...10,411,698
Ensembl chr10:10,406,867...10,411,698

G

interleukin 18

NCBI chr 5:20,972,742...20,995,327
Ensembl chr 5:20,972,871...20,995,348

G

mannose binding lectin 1

susceptibility

NCBI chr 4:29,419,886...29,424,377

G

nucleotide binding oligomerization domain containing 1

NCBI chr14:43,162,671...43,226,948
Ensembl chr14:43,163,571...43,227,103

G

nucleotide binding oligomerization domain containing 2

NCBI chr 2:64,636,850...64,667,232
Ensembl chr 2:64,635,519...64,667,232

G

toll like receptor 5

susceptibility

ClinVar Annotator: match by term: Legionnaire disease, susceptibility to

PMID:14623910 PMID:16027372 PMID:23447684 PMID:25741868

NCBI chr38:23,700,323...23,705,628
Ensembl chr38:23,702,033...23,705,314

G

toll like receptor 9

NCBI chr20:37,529,322...37,547,117
Ensembl chr20:37,542,340...37,547,114
Ensembl chr20:37,542,340...37,547,114

G

TNF receptor superfamily member 1A

NCBI chr27:38,641,837...38,654,693
Ensembl chr27:38,638,753...38,700,282

G

TNF receptor superfamily member 1B

NCBI chr 2:84,140,179...84,151,219
Ensembl chr 2:84,141,911...84,157,191

Term paths to the root

Path 1
Term	Annotations
disease	17774
disease of anatomical entity	15146
respiratory system disease	3394
Respiratory Tract Infections	522
legionellosis	12
Legionnaires' disease	12
Pontiac fever	0
Path 2
Term	Annotations
disease	17774
disease by infectious agent	2126
Bacterial Infections and Mycoses	1009
bacterial infectious disease	798
primary bacterial infectious disease	182
legionellosis	12
Legionnaires' disease	12
Pontiac fever	0

paths to the root