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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.
Term:viral meningitis
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Accession:DOID:10310 term browser browse the term
Definition:A meningitis that has_material_basis_in a viral infection. (DO)
Synonyms:exact_synonym: viral meningitides
 primary_id: MESH:D008587
 xref: EFO:1001236;   ICD10CM:A87;   ICD9CM:047.9;   NCI:C118298
For additional species annotation, visit the Alliance of Genome Resources.


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viral meningitis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tlr4 toll-like receptor 4 ISO mRNA:increased expression: : RGD PMID:12781911 RGD:7794740 NCBI chr 5:80,145,867...80,159,501
Ensembl chr 5:80,145,826...80,159,628 		JBrowse link
aseptic meningitis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alb albumin ISO CTD Direct Evidence: marker/mechanism CTD PMID:5108595 PMID:5109917 PMID:5536438 NCBI chr14:17,607,397...17,622,814
Ensembl chr14:17,607,381...17,622,836 		JBrowse link
G Il6 interleukin 6 ISO CTD Direct Evidence: marker/mechanism CTD PMID:10888991 NCBI chr 4:5,214,602...5,219,178
Ensembl chr 4:5,213,394...5,219,178 		JBrowse link
lymphocytic choriomeningitis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd274 CD274 molecule ISO RGD PMID:23230000 RGD:41410802 NCBI chr 1:227,116,674...227,137,379
Ensembl chr 1:227,116,649...227,134,450 		JBrowse link
G Clec12a C-type lectin domain family 12, member A disease_progression ISO RGD PMID:31451663 RGD:41412202 NCBI chr 4:162,798,125...162,816,757
Ensembl chr 4:162,798,125...162,816,753 		JBrowse link
G Ifnar1 interferon alpha and beta receptor subunit 1 disease_progression ISO DNA:mutation: : RGD PMID:28878077 PMID:24760883 RGD:124715467, RGD:124715479 NCBI chr11:30,725,774...30,752,227
Ensembl chr11:30,725,790...30,749,979 		JBrowse link
G Ifngr1 interferon gamma receptor 1 ameliorates ISO RGD PMID:22496215 RGD:124715469 NCBI chr 1:14,333,167...14,351,799
Ensembl chr 1:14,333,187...14,351,785 		JBrowse link
G Il1rl1 interleukin 1 receptor-like 1 severity ISO RGD PMID:25829541 RGD:40400708 NCBI chr 9:42,661,694...42,727,266
Ensembl chr 9:42,697,192...42,727,256 		JBrowse link
G Il21r interleukin 21 receptor ISO RGD PMID:19478140 RGD:6892934 NCBI chr 1:180,168,028...180,195,690
Ensembl chr 1:180,168,097...180,195,522 		JBrowse link
G Irf7 interferon regulatory factor 7 disease_progression ISO RGD PMID:24760883 PMID:24760883 RGD:124715479, RGD:124715479 NCBI chr 1:196,367,380...196,370,943
Ensembl chr 1:196,367,361...196,370,832 		JBrowse link
G Irf9 interferon regulatory factor 9 disease_progression
ameliorates		 ISO DNA:mutation: : RGD PMID:28878077 PMID:24760883 PMID:22496215 RGD:124715467, RGD:124715479, RGD:124715469 NCBI chr15:29,095,474...29,101,924
Ensembl chr15:29,095,789...29,101,236 		JBrowse link
G Ncr1 natural cytotoxicity triggering receptor 1 ISO RGD PMID:30995287 RGD:40818298 NCBI chr 1:69,614,744...69,622,594
Ensembl chr 1:69,616,601...69,660,558 		JBrowse link
G Nfkb1 nuclear factor kappa B subunit 1 severity ISO RGD PMID:20565293 RGD:40902858 NCBI chr 2:224,016,214...224,132,135
Ensembl chr 2:224,016,214...224,110,404 		JBrowse link
G Nfkb2 nuclear factor kappa B subunit 2 disease_progression ISO RGD PMID:20565293 RGD:40902858 NCBI chr 1:245,164,586...245,173,225
Ensembl chr 1:245,165,950...245,173,213 		JBrowse link
G Pdcd1 programmed cell death 1 treatment ISO RGD PMID:30726291 PMID:23230000 RGD:40818232, RGD:41410802 NCBI chr 9:94,418,786...94,431,945
Ensembl chr 9:94,418,791...94,431,937 		JBrowse link
G Stat1 signal transducer and activator of transcription 1 exacerbates ISO RGD PMID:22496215 RGD:124715469 NCBI chr 9:49,419,561...49,459,969
Ensembl chr 9:49,419,340...49,588,540 		JBrowse link
G Stat2 signal transducer and activator of transcription 2 ISO RGD PMID:32094187 PMID:24760883 RGD:42722006, RGD:124715479 NCBI chr 7:702,565...718,349
Ensembl chr 7:702,495...718,967 		JBrowse link
G Was WASP actin nucleation promoting factor ISO RGD PMID:23141740 RGD:38676258 NCBI chr  X:14,405,105...14,413,850
Ensembl chr  X:14,405,124...14,413,849 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  disease 21128
    disease by infectious agent 2214
      viral infectious disease 1680
        Central Nervous System Viral Diseases 110
          viral meningitis 18
            aseptic meningitis 2
            lymphocytic choriomeningitis 15
Path 2
Term Annotations click to browse term
  disease 21128
    disease of anatomical entity 18212
      nervous system disease 14060
        central nervous system disease 12399
          Central Nervous System Infections 296
            Central Nervous System Viral Diseases 110
              viral meningitis 18
                aseptic meningitis 2
                lymphocytic choriomeningitis 15
paths to the root