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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.

Term:small intestine cancer
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Accession:DOID:10154 term browser browse the term
Definition:An intestinal cancer that is located in the small intestine.
Synonyms:primary_id: RDO:9002142
 xref: GARD:9385;   ICD10CM:C17;   ICD9CM:152.9;   NCI:C7523
For additional species annotation, visit the Alliance of Genome Resources.


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adult spinal cord ependymoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chd6 chromodomain helicase DNA binding protein 6 ISO ClinVar Annotator: match by term: Adult Spinal Cord Ependymoma ClinVar NCBI chr 3:149,596,509...149,757,765
Ensembl chr 3:149,596,509...149,757,755
JBrowse link
duodenal gastrinoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Men1 menin 1 ISO associated with Neuroendocrine Tumors; DNA:loss of heterozygosity: : RGD PMID:17135306 RGD:2317341 NCBI chr 1:203,638,905...203,644,871
Ensembl chr 1:203,639,000...203,644,871
JBrowse link
duodenum adenocarcinoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apc APC regulator of WNT signaling pathway ISO ClinVar Annotator: match by term: Duodenal adenocarcinoma ClinVar PMID:24033266 PMID:25741868 PMID:26530882 PMID:28195569 PMID:28492532 More... NCBI chr18:25,828,558...25,925,511
Ensembl chr18:25,864,222...25,922,696
JBrowse link
small intestine adenocarcinoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gstm1 glutathione S-transferase mu 1 ISO RGD PMID:12940438 RGD:14700963 NCBI chr 2:195,649,845...195,655,402
Ensembl chr 2:195,649,845...195,655,411
JBrowse link
G Map2k1 mitogen activated protein kinase kinase 1 ISO RGD PMID:19014680 RGD:13464351 NCBI chr 8:64,683,449...64,754,900
Ensembl chr 8:64,683,449...64,755,147
JBrowse link
G Map2k2 mitogen activated protein kinase kinase 2 ISO RGD PMID:19014680 RGD:13464351 NCBI chr 7:8,590,729...8,610,279
Ensembl chr 7:8,580,905...8,610,243
JBrowse link
small intestine carcinoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arid1a AT-rich interaction domain 1A exacerbates ISO protein:decreased expression:small intestine (human) RGD PMID:25400081 RGD:126781719 NCBI chr 5:145,908,181...145,981,609
Ensembl chr 5:145,908,181...145,985,564
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  disease 17205
    disease of anatomical entity 16551
      gastrointestinal system disease 6061
        intestinal disease 2447
          Intestinal Neoplasms 1528
            intestinal cancer 763
              small intestine cancer 7
                duodenum cancer + 2
                ileum cancer + 0
                jejunal cancer + 0
                small intestinal L-cell glucagon-like peptide producing tumor 0
                small intestinal sarcoma + 0
                small intestinal vasoactive intestinal peptide producing tumor 0
                small intestine carcinoid neuroendocrine tumor 0
                small intestine carcinoma + 6
                small intestine lymphoma 0
Path 2
Term Annotations click to browse term
  disease 17205
    disease of anatomical entity 16551
      gastrointestinal system disease 6061
        Gastrointestinal Diseases 4144
          Gastrointestinal Neoplasms 3307
            gastrointestinal system cancer 2527
              intestinal cancer 763
                small intestine cancer 7
                  duodenum cancer + 2
                  ileum cancer + 0
                  jejunal cancer + 0
                  small intestinal L-cell glucagon-like peptide producing tumor 0
                  small intestinal sarcoma + 0
                  small intestinal vasoactive intestinal peptide producing tumor 0
                  small intestine carcinoid neuroendocrine tumor 0
                  small intestine carcinoma + 6
                  small intestine lymphoma 0
paths to the root