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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.

Term:benign familial hematuria
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Accession:DOID:0111365 term browser browse the term
Definition:A urinary system disease characterized by the presence of blood in the urine, thinning of the glomerular basement membrane and normal renal function that has_material_basis_in heterozygous mutation in COL4A3 or COL4A4 on chromosome 2q36.3. (DO)
Synonyms:exact_synonym: BFH;   MICROSCOPIC HEMATURIA;   TMN;   Thin-Basement-Membrane Nephropathy;   familial hematuria;   thin membrane nephropathy
 primary_id: MESH:C562476
 alt_id: OMIM:141200
For additional species annotation, visit the Alliance of Genome Resources.



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benign familial hematuria term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col4a3 collagen type IV alpha 3 chain ISO ClinVar Annotator: match by term: Benign familial hematuria | ClinVar Annotator: match by term: Microscopic hematuria | ClinVar Annotator: match by term: Thin basement membrane nephropathy OMIM
ClinVar
RGD
PMID:11134255 PMID:11961012 PMID:23325022 PMID:24052634 PMID:25229338 More... RGD:7242047 NCBI chr 9:83,875,958...84,004,955
Ensembl chr 9:83,875,561...84,001,895
JBrowse link
G Col4a4 collagen type IV alpha 4 chain ISO ClinVar Annotator: match by term: Benign familial hematuria | ClinVar Annotator: match by term: Microscopic hematuria | ClinVar Annotator: match by term: Thin basement membrane nephropathy OMIM
ClinVar
RGD
PMID:8787673 PMID:9536098 PMID:9792860 PMID:11961012 PMID:12325029 More... RGD:7242047 NCBI chr 9:83,833,173...83,875,436
Ensembl chr 9:83,755,515...83,875,876
JBrowse link
G Col4a5 collagen type IV alpha 5 chain ISO ClinVar Annotator: match by term: Familial hematuria | ClinVar Annotator: match by term: Microscopic hematuria ClinVar PMID:25741868 NCBI chr  X:105,118,762...105,322,699
Ensembl chr  X:105,118,820...105,322,692
JBrowse link
G Lama5 laminin subunit alpha 5 ISO ClinVar Annotator: match by term: Familial hematuria ClinVar NCBI chr 3:167,270,296...167,318,370
Ensembl chr 3:167,270,296...167,318,451
JBrowse link
G Myo1e myosin IE ISO ClinVar Annotator: match by term: Microscopic hematuria ClinVar PMID:24033266 PMID:25741868 PMID:28492532 NCBI chr 8:70,887,934...71,080,180
Ensembl chr 8:70,887,870...71,080,169
JBrowse link
G Plce1 phospholipase C, epsilon 1 ISO ClinVar Annotator: match by term: Microscopic hematuria ClinVar PMID:25741868 NCBI chr 1:236,243,445...236,552,571
Ensembl chr 1:236,244,683...236,551,438
JBrowse link
G Wt1 WT1 transcription factor ISO ClinVar Annotator: match by term: Microscopic hematuria ClinVar PMID:24033266 PMID:24728327 PMID:25741868 PMID:28492532 NCBI chr 3:91,566,540...91,613,653
Ensembl chr 3:91,567,001...91,613,643
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  disease 18203
    Pathological Conditions, Signs and Symptoms 12569
      Pathologic Processes 7846
        Hemorrhage 287
          Hematuria 18
            benign familial hematuria 7
Path 2
Term Annotations click to browse term
  disease 18203
    Developmental Disease 13119
      Congenital, Hereditary, and Neonatal Diseases and Abnormalities 11888
        genetic disease 11398
          monogenic disease 8950
            autosomal genetic disease 7995
              autosomal dominant disease 5483
                benign familial hematuria 7
paths to the root