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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.

Term:hereditary spastic paraplegia 45
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Accession:DOID:0110797 term browser browse the term
Definition:A hereditary spastic paraplegia that has_material_basis_in mutation in the NT5C2 gene on chromosome 10q24. (DO)
Synonyms:exact_synonym: SPG45;   SPG65;   autosomal recessive spastic paraplegia 45;   autosomal recessive spastic paraplegia type 45;   autosomal recessive spastic paraplegia type 65
 primary_id: OMIM:613162
 alt_id: RDO:0009779
 xref: ORDO:320396
For additional species annotation, visit the Alliance of Genome Resources.


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hereditary spastic paraplegia 45 term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnnm2 cyclin and CBS domain divalent metal cation transport mediator 2 ISO ClinVar Annotator: match by term: Spastic paraplegia 45, autosomal recessive ClinVar PMID:28492532 NCBI chr 1:266,530,421...266,651,292
Ensembl chr 1:266,530,477...266,649,398
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G Nt5c2 5'-nucleotidase, cytosolic II ISO ClinVar Annotator: match by OMIM:613162
ClinVar Annotator: match by term: Spastic paraplegia 45, autosomal recessive
OMIM
ClinVar
PMID:19415352 PMID:24482476 PMID:25741868 PMID:28492532 PMID:29123918 PMID:32214227 NCBI chr 1:266,652,966...266,782,935
Ensembl chr 1:266,659,519...266,782,910
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  disease 16123
    disease of anatomical entity 15370
      nervous system disease 10975
        central nervous system disease 9096
          paraplegia 144
            hereditary spastic paraplegia 131
              hereditary spastic paraplegia 45 2
Path 2
Term Annotations click to browse term
  disease 16123
    disease of anatomical entity 15370
      nervous system disease 10975
        central nervous system disease 9096
          neurodegenerative disease 3220
            Nervous System Heredodegenerative Disorders 1911
              motor peripheral neuropathy 522
                hereditary spastic paraplegia 131
                  hereditary spastic paraplegia 45 2
paths to the root