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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.
Term:autosomal recessive nonsyndromic deafness 1A
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Accession:DOID:0110475 term browser browse the term
Definition:An autosomal recessive nonsyndromic deafness that is characterized by prelingual onset with usually stable hearing loss and has_material_basis_in mutation in the GJB2 gene on chromosome 13q12. (DO)
Synonyms:exact_synonym: AUTOSOMAL RECESSIVE DEAFNESS TYPE 1A;   DFNB1A;   autosomal recessive deafness 1A
 narrow_synonym: DEAFNESS, DIGENIC, GJB2/GJB3;   DEAFNESS, DIGENIC, GJB2/GJB6
 primary_id: MESH:C567134
 alt_id: OMIM:220290
 xref: NCI:C129022


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autosomal recessive nonsyndromic deafness 1A term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CRYL1 crystallin lambda 1 IAGP ClinVar Annotator: match by term: Deafness, digenic, GJB2/GJB6
ClinVar Annotator: match by term: Deafness, autosomal recessive 1A		 ClinVar PMID:11807148 PMID:12172394 PMID:12885339 PMID:14571368 PMID:15638823 More... NCBI chr13:20,403,669...20,525,857
Ensembl chr13:20,403,666...20,525,873 		JBrowse link
G EEF1AKMT1 EEF1A lysine methyltransferase 1 IAGP ClinVar Annotator: match by term: Deafness, autosomal recessive 1A ClinVar PMID:28492532 NCBI chr13:20,728,731...20,773,961
Ensembl chr13:20,728,731...20,773,961 		JBrowse link
G GJA3 gap junction protein alpha 3 IAGP ClinVar Annotator: match by term: Deafness, autosomal recessive 1A ClinVar PMID:28492532 NCBI chr13:20,138,255...20,161,565
Ensembl chr13:20,138,255...20,161,052 		JBrowse link
G GJB2 gap junction protein beta 2 IAGP
ISS
EXP		 ClinVar Annotator: match by term: Deafness, autosomal recessive 1A
OMIM:220290
CTD Direct Evidence: marker/mechanism
ClinVar Annotator: match by term: Deafness, digenic, GJB2/GJB6		 ClinVar
MouseDO
CTD
OMIM		 PMID:3 PMID:1218943 PMID:1511312 PMID:1693158 PMID:2104787 More... NCBI chr13:20,187,470...20,192,938
Ensembl chr13:20,187,463...20,192,938 		JBrowse link
G GJB3 gap junction protein beta 3 IAGP
EXP		 ClinVar Annotator: match by term: Deafness, digenic, GJB2/GJB3
ClinVar Annotator: match by term: Deafness, autosomal recessive 1A
CTD Direct Evidence: marker/mechanism		 ClinVar
CTD		 PMID:19050930 PMID:24033266 PMID:25741868 PMID:28492532 NCBI chr 1:34,781,214...34,786,364
Ensembl chr 1:34,781,214...34,786,369 		JBrowse link
G GJB4 gap junction protein beta 4 IAGP ClinVar Annotator: match by term: Deafness, autosomal recessive 1A ClinVar PMID:17259707 PMID:25333454 PMID:25741868 PMID:28492532 NCBI chr 1:34,759,740...34,762,327
Ensembl chr 1:34,759,740...34,762,327 		JBrowse link
G GJB6 gap junction protein beta 6 IAGP
ISS
EXP		 ClinVar Annotator: match by term: Deafness, digenic, GJB2/GJB6
ClinVar Annotator: match by term: Deafness, autosomal recessive 1A
OMIM:220290
CTD Direct Evidence: marker/mechanism		 ClinVar
MouseDO
CTD
OMIM		 PMID:10610709 PMID:10730756 PMID:11017065 PMID:11807148 PMID:11896458 More... NCBI chr13:20,221,962...20,232,319
Ensembl chr13:20,221,962...20,232,365 		JBrowse link
G IFT88 intraflagellar transport 88 IAGP ClinVar Annotator: match by term: Deafness, autosomal recessive 1A ClinVar PMID:28492532 NCBI chr13:20,567,157...20,691,444
Ensembl chr13:20,567,138...20,691,444 		JBrowse link
G IL17D interleukin 17D IAGP ClinVar Annotator: match by term: Deafness, autosomal recessive 1A ClinVar PMID:28492532 NCBI chr13:20,701,513...20,723,098
Ensembl chr13:20,702,127...20,723,098 		JBrowse link
G LOC112163647 Sharpr-MPRA regulatory region 6807 IAGP ClinVar Annotator: match by term: Deafness, autosomal recessive 1A
ClinVar Annotator: match by term: Deafness, digenic, GJB2/GJB6		 ClinVar PMID:11807148 PMID:12172394 PMID:12885339 PMID:14571368 PMID:15638823 More... NCBI chr13:20,506,870...20,507,164 JBrowse link
G LOC121466728 Sharpr-MPRA regulatory region 3329 IAGP ClinVar Annotator: match by term: Deafness, autosomal recessive 1A ClinVar PMID:28492532 NCBI chr13:20,534,370...20,534,664 JBrowse link
G LOC124849292 Sharpr-MPRA regulatory region 1468 IAGP ClinVar Annotator: match by term: Deafness, autosomal recessive 1A ClinVar PMID:28492532 NCBI chr13:20,717,550...20,717,844 JBrowse link
G LOC126861703 P300/CBP strongly-dependent group 1 enhancer GRCh37_chr13:20748586-20749785 IAGP ClinVar Annotator: match by term: Deafness, autosomal recessive 1A ClinVar PMID:28492532 NCBI chr13:20,174,447...20,175,646 JBrowse link
G LOC126861704 BRD4-independent group 4 enhancer GRCh37_chr13:20953976-20955175 IAGP ClinVar Annotator: match by term: Deafness, digenic, GJB2/GJB6
ClinVar Annotator: match by term: Deafness, autosomal recessive 1A		 ClinVar PMID:11807148 PMID:12172394 PMID:12885339 PMID:14571368 PMID:15638823 More... NCBI chr13:20,379,837...20,381,036 JBrowse link
G LOC126861705 CDK7 strongly-dependent group 2 enhancer GRCh37_chr13:20993166-20994365 IAGP ClinVar Annotator: match by term: Deafness, digenic, GJB2/GJB6
ClinVar Annotator: match by term: Deafness, autosomal recessive 1A		 ClinVar PMID:11807148 PMID:12172394 PMID:12885339 PMID:14571368 PMID:15638823 More... NCBI chr13:20,419,027...20,420,226 JBrowse link
G LOC130009312 ATAC-STARR-seq lymphoblastoid silent region 5150 IAGP ClinVar Annotator: match by term: Deafness, autosomal recessive 1A ClinVar PMID:28492532 NCBI chr13:20,160,783...20,160,872 JBrowse link
G LOC130009313 ATAC-STARR-seq lymphoblastoid silent region 5151 IAGP ClinVar Annotator: match by term: Deafness, autosomal recessive 1A ClinVar PMID:28492532 NCBI chr13:20,161,033...20,161,112 JBrowse link
G LOC130009314 ATAC-STARR-seq lymphoblastoid silent region 5152 IAGP ClinVar Annotator: match by term: Deafness, autosomal recessive 1A ClinVar PMID:28492532 NCBI chr13:20,161,343...20,161,702 JBrowse link
G LOC130009315 ATAC-STARR-seq lymphoblastoid active region 7417 IAGP ClinVar Annotator: match by term: Deafness, autosomal recessive 1A ClinVar PMID:28492532 NCBI chr13:20,219,572...20,219,751 JBrowse link
G LOC130009316 ATAC-STARR-seq lymphoblastoid active region 7418 IAGP ClinVar Annotator: match by term: Deafness, digenic, GJB2/GJB6
ClinVar Annotator: match by term: Deafness, autosomal recessive 1A		 ClinVar PMID:11807148 PMID:12172394 PMID:12885339 PMID:14571368 PMID:15638823 More... NCBI chr13:20,425,154...20,425,203 JBrowse link
G LOC130009317 ATAC-STARR-seq lymphoblastoid active region 7419 IAGP ClinVar Annotator: match by term: Deafness, digenic, GJB2/GJB6
ClinVar Annotator: match by term: Deafness, autosomal recessive 1A		 ClinVar PMID:11807148 PMID:12172394 PMID:12885339 PMID:14571368 PMID:15638823 More... NCBI chr13:20,425,214...20,425,453 JBrowse link
G LOC130009318 ATAC-STARR-seq lymphoblastoid active region 7420 IAGP ClinVar Annotator: match by term: Deafness, digenic, GJB2/GJB6
ClinVar Annotator: match by term: Deafness, autosomal recessive 1A		 ClinVar PMID:11807148 PMID:12172394 PMID:12885339 PMID:14571368 PMID:15638823 More... NCBI chr13:20,425,886...20,425,945 JBrowse link
G LOC130009319 ATAC-STARR-seq lymphoblastoid active region 7421 IAGP ClinVar Annotator: match by term: Deafness, digenic, GJB2/GJB6
ClinVar Annotator: match by term: Deafness, autosomal recessive 1A		 ClinVar PMID:11807148 PMID:12172394 PMID:12885339 PMID:14571368 PMID:15638823 More... NCBI chr13:20,426,006...20,426,065 JBrowse link
G LOC130009320 ATAC-STARR-seq lymphoblastoid active region 7422 IAGP ClinVar Annotator: match by term: Deafness, digenic, GJB2/GJB6
ClinVar Annotator: match by term: Deafness, autosomal recessive 1A		 ClinVar PMID:11807148 PMID:12172394 PMID:12885339 PMID:14571368 PMID:15638823 More... NCBI chr13:20,476,106...20,476,305 JBrowse link
G LOC130009321 ATAC-STARR-seq lymphoblastoid active region 7423 IAGP ClinVar Annotator: match by term: Deafness, digenic, GJB2/GJB6
ClinVar Annotator: match by term: Deafness, autosomal recessive 1A		 ClinVar PMID:11807148 PMID:12172394 PMID:12885339 PMID:14571368 PMID:15638823 More... NCBI chr13:20,476,376...20,476,425 JBrowse link
G LOC130009322 ATAC-STARR-seq lymphoblastoid silent region 5153 IAGP ClinVar Annotator: match by term: Deafness, digenic, GJB2/GJB6
ClinVar Annotator: match by term: Deafness, autosomal recessive 1A		 ClinVar PMID:11807148 PMID:12172394 PMID:12885339 PMID:14571368 PMID:15638823 More... NCBI chr13:20,525,533...20,526,082 JBrowse link
G LOC130009323 ATAC-STARR-seq lymphoblastoid active region 7424 IAGP ClinVar Annotator: match by term: Deafness, digenic, GJB2/GJB6
ClinVar Annotator: match by term: Deafness, autosomal recessive 1A		 ClinVar PMID:11807148 PMID:12172394 PMID:12885339 PMID:14571368 PMID:15638823 More... NCBI chr13:20,526,263...20,526,372 JBrowse link
G LOC130009324 ATAC-STARR-seq lymphoblastoid active region 7425 IAGP ClinVar Annotator: match by term: Deafness, digenic, GJB2/GJB6
ClinVar Annotator: match by term: Deafness, autosomal recessive 1A		 ClinVar PMID:11807148 PMID:12172394 PMID:12885339 PMID:14571368 PMID:15638823 More... NCBI chr13:20,528,721...20,528,830 JBrowse link
G LOC130009325 ATAC-STARR-seq lymphoblastoid silent region 5154 IAGP ClinVar Annotator: match by term: Deafness, autosomal recessive 1A ClinVar PMID:28492532 NCBI chr13:20,566,857...20,567,266 JBrowse link
G LOC130009326 ATAC-STARR-seq lymphoblastoid silent region 5155 IAGP ClinVar Annotator: match by term: Deafness, autosomal recessive 1A ClinVar PMID:28492532 NCBI chr13:20,703,081...20,703,160 JBrowse link
G LOC130009327 ATAC-STARR-seq lymphoblastoid silent region 5156 IAGP ClinVar Annotator: match by term: Deafness, autosomal recessive 1A ClinVar PMID:28492532 NCBI chr13:20,703,581...20,703,720 JBrowse link
G LOC130009328 ATAC-STARR-seq lymphoblastoid silent region 5157 IAGP ClinVar Annotator: match by term: Deafness, autosomal recessive 1A ClinVar PMID:28492532 NCBI chr13:20,704,011...20,704,520 JBrowse link
G LOC130009329 ATAC-STARR-seq lymphoblastoid active region 7426 IAGP ClinVar Annotator: match by term: Deafness, autosomal recessive 1A ClinVar PMID:28492532 NCBI chr13:20,773,316...20,773,535 JBrowse link
G LOC132090175 Neanderthal introgressed variant-containing enhancer experimental_32461 IAGP ClinVar Annotator: match by term: Deafness, digenic, GJB2/GJB6
ClinVar Annotator: match by term: Deafness, autosomal recessive 1A		 ClinVar PMID:11807148 PMID:12172394 PMID:12885339 PMID:14571368 PMID:15638823 More... NCBI chr13:20,273,378...20,273,547 JBrowse link
G MIR4499 microRNA 4499 IAGP ClinVar Annotator: match by term: Deafness, digenic, GJB2/GJB6
ClinVar Annotator: match by term: Deafness, autosomal recessive 1A		 ClinVar PMID:11807148 PMID:12172394 PMID:12885339 PMID:14571368 PMID:15638823 More... NCBI chr13:20,433,778...20,433,846
Ensembl chr13:20,433,778...20,433,846 		JBrowse link
G XPO4 exportin 4 IAGP ClinVar Annotator: match by term: Deafness, autosomal recessive 1A ClinVar PMID:28492532 NCBI chr13:20,777,329...20,902,774
Ensembl chr13:20,777,329...20,903,048 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  disease 41189
    sensory system disease 9730
      Hearing Disorders 1140
        Hearing Loss 1134
          sensorineural hearing loss 904
            autosomal recessive nonsyndromic deafness 211
              autosomal recessive nonsyndromic deafness 1A 36
Path 2
Term Annotations click to browse term
  disease 41189
    Pathological Conditions, Signs and Symptoms 21466
      Signs and Symptoms 16320
        Neurologic Manifestations 15387
          sensory system disease 9730
            Otorhinolaryngologic Diseases 2281
              auditory system disease 1340
                Hearing Disorders 1140
                  Hearing Loss 1134
                    Deafness 651
                      nonsyndromic deafness 321
                        autosomal recessive nonsyndromic deafness 211
                          autosomal recessive nonsyndromic deafness 1A 36
paths to the root