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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.

Term:glutatione synthetase deficiency with 5-oxoprolinuria
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Accession:DOID:0081034 term browser browse the term
Definition:A glutathione synthetase deficiency that is characterized by massive urinary excretion of 5-oxoproline, metabolic acidosis, hemolytic anemia, and central nervous system damage and that has_material_basis_in homozygous or compound heterozygous mutation in the gene encoding glutathione synthetase (GSS) on chromosome 20q11. The metabolic defect results in decreased levels of cellular glutathione, which overstimulates the synthesis of gamma-glutamylcysteine and its subsequent conversion to 5-oxoproline. (DO)
Synonyms:exact_synonym: 5-oxoprolinemia;   5-oxoprolinuria;   5-oxoprolinuria due to glutathione synthetase deficiency;   GSSD
 xref: MIM:266130;   MONDO:0009947;   ORDO:32



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glutatione synthetase deficiency with 5-oxoprolinuria term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acss2 acyl-CoA synthetase short-chain family member 2 ISO ClinVar Annotator: match by term: 5-OXOPROLINURIA DUE TO GLUTATHIONE SYNTHETASE DEFICIENCY ClinVar PMID:12638941 PMID:15717202 PMID:28492532 NCBI chr 3:164,464,124...164,507,607
Ensembl chr 3:164,464,055...164,519,830
JBrowse link
G Actl10 actin-like 10 ISO ClinVar Annotator: match by term: 5-OXOPROLINURIA DUE TO GLUTATHIONE SYNTHETASE DEFICIENCY ClinVar PMID:12638941 PMID:15717202 PMID:28492532 NCBI chr 3:143,057,061...143,058,561
Ensembl chr 3:163,516,855...163,520,048
JBrowse link
G Ahcy adenosylhomocysteinase ISO ClinVar Annotator: match by term: 5-OXOPROLINURIA DUE TO GLUTATHIONE SYNTHETASE DEFICIENCY ClinVar PMID:12638941 PMID:15717202 PMID:28492532 NCBI chr 3:143,569,134...143,584,359
Ensembl chr 3:164,029,338...164,044,587
JBrowse link
G Asip agouti signaling protein ISO ClinVar Annotator: match by term: 5-OXOPROLINURIA DUE TO GLUTATHIONE SYNTHETASE DEFICIENCY ClinVar PMID:12638941 PMID:15717202 PMID:28492532 NCBI chr 3:143,473,584...143,561,170
Ensembl chr 3:164,015,903...164,021,378
JBrowse link
G Bpifa1 BPI fold containing family A, member 1 ISO ClinVar Annotator: match by term: 5-OXOPROLINURIA DUE TO GLUTATHIONE SYNTHETASE DEFICIENCY ClinVar PMID:12638941 PMID:15717202 PMID:28492532 NCBI chr 3:163,087,965...163,093,708
Ensembl chr 3:163,087,965...163,093,708
JBrowse link
G Bpifa2 BPI fold containing family A, member 2 ISO ClinVar Annotator: match by term: 5-OXOPROLINURIA DUE TO GLUTATHIONE SYNTHETASE DEFICIENCY ClinVar PMID:12638941 PMID:15717202 PMID:28492532 NCBI chr 3:142,493,379...142,501,343
Ensembl chr 3:162,953,538...162,961,496
JBrowse link
G Bpifa3 BPI fold containing family A, member 3 ISO ClinVar Annotator: match by term: 5-OXOPROLINURIA DUE TO GLUTATHIONE SYNTHETASE DEFICIENCY ClinVar PMID:12638941 PMID:15717202 PMID:28492532 NCBI chr 3:142,609,748...142,619,703
Ensembl chr 3:163,069,925...163,079,856
JBrowse link
G Bpifb1 BPI fold containing family B, member 1 ISO ClinVar Annotator: match by term: 5-OXOPROLINURIA DUE TO GLUTATHIONE SYNTHETASE DEFICIENCY ClinVar PMID:12638941 PMID:15717202 PMID:28492532 NCBI chr 3:142,672,995...142,706,258
Ensembl chr 3:163,133,151...163,166,419
JBrowse link
G Bpifb2 BPI fold containing family B, member 2 ISO ClinVar Annotator: match by term: 5-OXOPROLINURIA DUE TO GLUTATHIONE SYNTHETASE DEFICIENCY ClinVar PMID:12638941 PMID:15717202 PMID:28492532 NCBI chr 3:142,356,990...142,377,053
Ensembl chr 3:162,818,223...162,837,210
JBrowse link
G Bpifb3 BPI fold containing family B, member 3 ISO ClinVar Annotator: match by term: 5-OXOPROLINURIA DUE TO GLUTATHIONE SYNTHETASE DEFICIENCY ClinVar PMID:12638941 PMID:15717202 PMID:28492532 NCBI chr 3:142,401,068...142,415,684
Ensembl chr 3:162,861,234...162,875,850
JBrowse link
G Bpifb4 BPI fold containing family B, member 4 ISO ClinVar Annotator: match by term: 5-OXOPROLINURIA DUE TO GLUTATHIONE SYNTHETASE DEFICIENCY ClinVar PMID:12638941 PMID:15717202 PMID:28492532 NCBI chr 3:142,423,571...142,448,044
Ensembl chr 3:162,881,437...162,908,207
JBrowse link
G Bpifb6 BPI fold containing family B, member 6 ISO ClinVar Annotator: match by term: 5-OXOPROLINURIA DUE TO GLUTATHIONE SYNTHETASE DEFICIENCY ClinVar PMID:12638941 PMID:15717202 PMID:28492532 NCBI chr 3:142,381,478...142,395,304
Ensembl chr 3:162,841,644...162,855,470
JBrowse link
G C3h20orf144 similar to human chromosome 20 open reading frame 144 ISO ClinVar Annotator: match by term: 5-OXOPROLINURIA DUE TO GLUTATHIONE SYNTHETASE DEFICIENCY ClinVar PMID:12638941 PMID:15717202 PMID:28492532 NCBI chr 3:143,053,971...143,055,327
Ensembl chr 3:163,514,344...163,515,481
JBrowse link
G C3h20orf173 similar to human chromosome 20 open reading frame 173 ISO ClinVar Annotator: match by term: 5-OXOPROLINURIA DUE TO GLUTATHIONE SYNTHETASE DEFICIENCY ClinVar PMID:12638941 PMID:15717202 PMID:28492532 NCBI chr 3:144,514,060...144,524,979
Ensembl chr 3:164,980,014...164,985,029
JBrowse link
G Cbfa2t2 CBFA2/RUNX1 partner transcriptional co-repressor 2 ISO ClinVar Annotator: match by term: 5-OXOPROLINURIA DUE TO GLUTATHIONE SYNTHETASE DEFICIENCY ClinVar PMID:12638941 PMID:15717202 PMID:28492532 NCBI chr 3:142,936,945...143,043,205
Ensembl chr 3:163,397,185...163,503,407
JBrowse link
G Cdk5rap1 CDK5 regulatory subunit associated protein 1 ISO ClinVar Annotator: match by term: 5-OXOPROLINURIA DUE TO GLUTATHIONE SYNTHETASE DEFICIENCY ClinVar PMID:12638941 PMID:15717202 PMID:28492532 NCBI chr 3:142,838,081...142,872,669
Ensembl chr 3:163,191,056...163,332,908
JBrowse link
G Cep250 centrosomal protein 250 ISO ClinVar Annotator: match by term: 5-OXOPROLINURIA DUE TO GLUTATHIONE SYNTHETASE DEFICIENCY ClinVar PMID:12638941 PMID:15717202 PMID:28492532 NCBI chr 3:144,470,946...144,516,125
Ensembl chr 3:164,931,066...164,976,210
JBrowse link
G Chmp4b charged multivesicular body protein 4B ISO ClinVar Annotator: match by term: 5-OXOPROLINURIA DUE TO GLUTATHIONE SYNTHETASE DEFICIENCY ClinVar PMID:12638941 PMID:15717202 PMID:28492532 NCBI chr 3:163,631,054...163,671,569
Ensembl chr 3:163,631,054...163,671,569
JBrowse link
G Cpne1 copine 1 ISO ClinVar Annotator: match by term: 5-OXOPROLINURIA DUE TO GLUTATHIONE SYNTHETASE DEFICIENCY ClinVar PMID:12638941 PMID:15717202 PMID:28492532 NCBI chr 3:144,587,531...144,629,911 JBrowse link
G Dnmt3b DNA methyltransferase 3 beta ISO ClinVar Annotator: match by term: 5-OXOPROLINURIA DUE TO GLUTATHIONE SYNTHETASE DEFICIENCY ClinVar PMID:12638941 PMID:15717202 PMID:28492532 NCBI chr 3:162,590,777...162,629,313
Ensembl chr 3:162,604,037...162,629,313
JBrowse link
G Dynlrb1 dynein light chain roadblock-type 1 ISO ClinVar Annotator: match by term: 5-OXOPROLINURIA DUE TO GLUTATHIONE SYNTHETASE DEFICIENCY ClinVar PMID:12638941 PMID:15717202 PMID:28492532 NCBI chr 3:143,742,427...143,764,227
Ensembl chr 3:164,202,953...164,224,409
JBrowse link
G E2f1 E2F transcription factor 1 ISO ClinVar Annotator: match by term: 5-OXOPROLINURIA DUE TO GLUTATHIONE SYNTHETASE DEFICIENCY ClinVar PMID:12638941 PMID:15717202 PMID:28492532 NCBI chr 3:163,524,739...163,535,563
Ensembl chr 3:163,524,739...163,535,563
JBrowse link
G Edem2 ER degradation enhancing alpha-mannosidase like protein 2 ISO ClinVar Annotator: match by term: 5-OXOPROLINURIA DUE TO GLUTATHIONE SYNTHETASE DEFICIENCY ClinVar PMID:12638941 PMID:15717202 PMID:28492532 NCBI chr 3:144,201,604...144,227,423
Ensembl chr 3:164,661,742...164,687,559
JBrowse link
G Efcab8 EF-hand calcium binding domain 8 ISO ClinVar Annotator: match by term: 5-OXOPROLINURIA DUE TO GLUTATHIONE SYNTHETASE DEFICIENCY ClinVar PMID:12638941 PMID:15717202 PMID:28492532 NCBI chr 3:142,257,195...142,323,743
Ensembl chr 3:162,717,494...162,783,899
JBrowse link
G Eif2s2 eukaryotic translation initiation factor 2 subunit beta ISO ClinVar Annotator: match by term: 5-OXOPROLINURIA DUE TO GLUTATHIONE SYNTHETASE DEFICIENCY ClinVar PMID:12638941 PMID:15717202 PMID:28492532 NCBI chr 3:143,374,652...143,395,460
Ensembl chr 3:163,834,851...163,855,570
JBrowse link
G Eif6 eukaryotic translation initiation factor 6 ISO ClinVar Annotator: match by term: 5-OXOPROLINURIA DUE TO GLUTATHIONE SYNTHETASE DEFICIENCY ClinVar PMID:12638941 PMID:15717202 PMID:28492532 NCBI chr 3:144,325,038...144,331,396
Ensembl chr 3:164,785,163...164,791,525
JBrowse link
G Ergic3 ERGIC and golgi 3 ISO ClinVar Annotator: match by term: 5-OXOPROLINURIA DUE TO GLUTATHIONE SYNTHETASE DEFICIENCY ClinVar PMID:12638941 PMID:15717202 PMID:28492532 NCBI chr 3:144,525,059...144,534,813
Ensembl chr 3:164,984,853...164,994,897
JBrowse link
G Fam83c family with sequence similarity 83, member C ISO ClinVar Annotator: match by term: 5-OXOPROLINURIA DUE TO GLUTATHIONE SYNTHETASE DEFICIENCY ClinVar PMID:12638941 PMID:15717202 PMID:28492532 NCBI chr 3:144,333,736...144,339,758
Ensembl chr 3:164,793,105...164,799,995
JBrowse link
G Gdf5 growth differentiation factor 5 ISO ClinVar Annotator: match by term: 5-OXOPROLINURIA DUE TO GLUTATHIONE SYNTHETASE DEFICIENCY ClinVar PMID:12638941 PMID:15717202 PMID:28492532 NCBI chr 3:164,914,401...164,918,593
Ensembl chr 3:164,914,401...164,918,593
JBrowse link
G Ggt7 gamma-glutamyltransferase 7 ISO ClinVar Annotator: match by term: 5-OXOPROLINURIA DUE TO GLUTATHIONE SYNTHETASE DEFICIENCY ClinVar PMID:12638941 PMID:15717202 PMID:28492532 NCBI chr 3:143,978,073...144,004,597
Ensembl chr 3:164,437,812...164,463,068
JBrowse link
G Gss glutathione synthetase ISO ClinVar Annotator: match by term: 5-OXOPROLINURIA DUE TO GLUTATHIONE SYNTHETASE DEFICIENCY OMIM
ClinVar
PMID:5476481 PMID:8896573 PMID:9215686 PMID:9536098 PMID:10369661 More... NCBI chr 3:144,047,849...144,078,197
Ensembl chr 3:164,508,005...164,538,306
JBrowse link
G Itch itchy E3 ubiquitin protein ligase ISO ClinVar Annotator: match by term: 5-OXOPROLINURIA DUE TO GLUTATHIONE SYNTHETASE DEFICIENCY ClinVar PMID:12638941 PMID:15717202 PMID:28492532 NCBI chr 3:143,642,348...143,733,745
Ensembl chr 3:164,105,812...164,193,932
JBrowse link
G Map1lc3a microtubule-associated protein 1 light chain 3 alpha ISO ClinVar Annotator: match by term: 5-OXOPROLINURIA DUE TO GLUTATHIONE SYNTHETASE DEFICIENCY ClinVar PMID:12638941 PMID:15717202 PMID:28492532 NCBI chr 3:164,243,204...164,244,850
Ensembl chr 3:164,243,093...164,244,850
JBrowse link
G Mapre1 microtubule-associated protein, RP/EB family, member 1 ISO ClinVar Annotator: match by term: 5-OXOPROLINURIA DUE TO GLUTATHIONE SYNTHETASE DEFICIENCY ClinVar PMID:12638941 PMID:15717202 PMID:28492532 NCBI chr 3:162,679,020...162,707,167
Ensembl chr 3:162,673,195...162,711,210
JBrowse link
G Mir499a microRNA 499a ISO ClinVar Annotator: match by term: 5-OXOPROLINURIA DUE TO GLUTATHIONE SYNTHETASE DEFICIENCY ClinVar PMID:12638941 PMID:15717202 PMID:28492532 NCBI chr 3:144,110,469...144,110,533
Ensembl chr 3:164,570,612...164,570,676
JBrowse link
G Mmp24 matrix metallopeptidase 24 ISO ClinVar Annotator: match by term: 5-OXOPROLINURIA DUE TO GLUTATHIONE SYNTHETASE DEFICIENCY ClinVar PMID:12638941 PMID:15717202 PMID:28492532 NCBI chr 3:144,279,096...144,323,572
Ensembl chr 3:164,739,226...164,783,696
JBrowse link
G Myh7b myosin heavy chain 7B ISO ClinVar Annotator: match by term: 5-OXOPROLINURIA DUE TO GLUTATHIONE SYNTHETASE DEFICIENCY ClinVar PMID:12638941 PMID:15717202 PMID:28492532 NCBI chr 3:144,076,911...144,122,714
Ensembl chr 3:164,558,340...164,582,094
JBrowse link
G Ncoa6 nuclear receptor coactivator 6 ISO ClinVar Annotator: match by term: 5-OXOPROLINURIA DUE TO GLUTATHIONE SYNTHETASE DEFICIENCY ClinVar PMID:12638941 PMID:15717202 PMID:28492532 NCBI chr 3:164,351,062...164,422,079
Ensembl chr 3:164,351,062...164,421,991
JBrowse link
G Nfs1 NFS1 cysteine desulfurase ISO ClinVar Annotator: match by term: 5-OXOPROLINURIA DUE TO GLUTATHIONE SYNTHETASE DEFICIENCY ClinVar PMID:12638941 PMID:15717202 PMID:28492532 NCBI chr 3:144,637,309...144,659,660
Ensembl chr 3:165,097,391...165,119,737
JBrowse link
G Pigu phosphatidylinositol glycan anchor biosynthesis, class U ISO ClinVar Annotator: match by term: 5-OXOPROLINURIA DUE TO GLUTATHIONE SYNTHETASE DEFICIENCY ClinVar PMID:12638941 PMID:15717202 PMID:28492532 NCBI chr 3:143,784,831...143,881,268
Ensembl chr 3:164,245,011...164,341,912
JBrowse link
G Procr protein C receptor ISO ClinVar Annotator: match by term: 5-OXOPROLINURIA DUE TO GLUTATHIONE SYNTHETASE DEFICIENCY ClinVar PMID:12638941 PMID:15717202 PMID:28492532 NCBI chr 3:144,254,596...144,258,863
Ensembl chr 3:164,711,636...164,718,989
JBrowse link
G Pxmp4 peroxisomal membrane protein 4 ISO ClinVar Annotator: match by term: 5-OXOPROLINURIA DUE TO GLUTATHIONE SYNTHETASE DEFICIENCY ClinVar PMID:12638941 PMID:15717202 PMID:28492532 NCBI chr 3:143,093,371...143,110,620
Ensembl chr 3:163,553,599...163,570,829
JBrowse link
G Raly RALY heterogeneous nuclear ribonucleoprotein ISO ClinVar Annotator: match by term: 5-OXOPROLINURIA DUE TO GLUTATHIONE SYNTHETASE DEFICIENCY ClinVar PMID:12638941 PMID:15717202 PMID:28492532 NCBI chr 3:143,306,039...143,370,542
Ensembl chr 3:163,766,478...163,830,740
JBrowse link
G Rbm12 RNA binding motif protein 12 ISO ClinVar Annotator: match by term: 5-OXOPROLINURIA DUE TO GLUTATHIONE SYNTHETASE DEFICIENCY ClinVar PMID:12638941 PMID:15717202 PMID:28492532 NCBI chr 3:144,609,661...144,629,911
Ensembl chr 3:165,042,878...165,090,021
JBrowse link
G Snta1 syntrophin, alpha 1 ISO ClinVar Annotator: match by term: 5-OXOPROLINURIA DUE TO GLUTATHIONE SYNTHETASE DEFICIENCY ClinVar PMID:12638941 PMID:15717202 PMID:28492532 NCBI chr 3:142,876,285...142,906,737
Ensembl chr 3:163,336,516...163,366,927
JBrowse link
G Spag4 sperm associated antigen 4 ISO ClinVar Annotator: match by term: 5-OXOPROLINURIA DUE TO GLUTATHIONE SYNTHETASE DEFICIENCY ClinVar PMID:12638941 PMID:15717202 PMID:28492532 NCBI chr 3:144,581,006...144,587,879
Ensembl chr 3:165,041,134...165,045,519
JBrowse link
G Sun5 Sad1 and UNC84 domain containing 5 ISO ClinVar Annotator: match by term: 5-OXOPROLINURIA DUE TO GLUTATHIONE SYNTHETASE DEFICIENCY ClinVar PMID:12638941 PMID:15717202 PMID:28492532 NCBI chr 3:142,334,931...142,355,349
Ensembl chr 3:162,795,096...162,815,521
JBrowse link
G Tp53inp2 tumor protein p53 inducible nuclear protein 2 ISO ClinVar Annotator: match by term: 5-OXOPROLINURIA DUE TO GLUTATHIONE SYNTHETASE DEFICIENCY ClinVar PMID:12638941 PMID:15717202 PMID:28492532 NCBI chr 3:143,881,427...143,890,104
Ensembl chr 3:164,343,205...164,350,225
JBrowse link
G Trpc4ap transient receptor potential cation channel, subfamily C, member 4 associated protein ISO ClinVar Annotator: match by term: 5-OXOPROLINURIA DUE TO GLUTATHIONE SYNTHETASE DEFICIENCY ClinVar PMID:12638941 PMID:15717202 PMID:28492532 NCBI chr 3:144,122,003...144,192,986
Ensembl chr 3:164,582,146...164,653,123
JBrowse link
G Uqcc1 ubiquinol-cytochrome c reductase complex assembly factor 1 ISO ClinVar Annotator: match by term: 5-OXOPROLINURIA DUE TO GLUTATHIONE SYNTHETASE DEFICIENCY ClinVar PMID:12638941 PMID:15717202 PMID:28492532 NCBI chr 3:144,353,276...144,445,810
Ensembl chr 3:164,814,424...164,905,778
JBrowse link
G Zfp341 zinc finger protein 341 ISO ClinVar Annotator: match by term: 5-OXOPROLINURIA DUE TO GLUTATHIONE SYNTHETASE DEFICIENCY ClinVar PMID:12638941 PMID:15717202 PMID:28492532 NCBI chr 3:163,582,937...163,616,448
Ensembl chr 3:163,579,298...163,616,446
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  disease 19167
    Nutritional and Metabolic Diseases 8574
      disease of metabolism 8574
        inherited metabolic disorder 6673
          amino acid metabolic disorder 1595
            glutathione synthetase deficiency 51
              glutatione synthetase deficiency with 5-oxoprolinuria 51
Path 2
Term Annotations click to browse term
  disease 19167
    Developmental Disease 14720
      Congenital, Hereditary, and Neonatal Diseases and Abnormalities 13780
        genetic disease 13401
          monogenic disease 10835
            autosomal genetic disease 10302
              autosomal recessive disease 7090
                glutatione synthetase deficiency with 5-oxoprolinuria 51
paths to the root