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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.
Term:vitamin D-dependent rickets type 1A
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Accession:DOID:0080886 term browser browse the term
Definition:A vitamin D-dependent rickets that is characterized by abnormally low levels of calcitriol and that has_material_basis_in mutation in the gene encoding 25-hydroxyvitamin D3-1-alpha-hydroxylase (CYP27B1) on chromosome 12q13. (DO)
Synonyms:exact_synonym: 1-Alpha-Hydroxylase Deficiency;   1-alpha, 25-hydroxyvitamin D3 deficiency, selective;   25-Hydroxycholecalciferol-1-Hydroxylase Deficiency;   PDDR IA;   PDDR1A;   Pseudovitamin D-Deficiency Rickets, Type IA;   VDD1;   VDDR1A;   Vitamin D Dependency, Type 1;   vitamin D hydroxylation-deficient rickets, type 1A
 related_synonym: vitamin D-deficiency rickets, type I
 primary_id: MESH:C562688
 alt_id: OMIA:000837;   OMIM:264700
For additional species annotation, visit the Alliance of Genome Resources.


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vitamin D-dependent rickets type 1A term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cyp27b1 cytochrome P450, family 27, subfamily b, polypeptide 1 treatment ISO
IMP		 ClinVar Annotator: match by term: VITAMIN D DEPENDENCY, TYPE 1 | ClinVar Annotator: match by term: Vitamin D-dependent rickets, type 1A OMIM
ClinVar
RGD		 PMID:9415400 PMID:9486994 PMID:9837822 PMID:10518789 PMID:10566658 More... RGD:32716373 NCBI chr 7:62,869,340...62,876,242
Ensembl chr 7:62,871,297...62,876,241 		JBrowse link
G Cyp27b1em1Thka cytochrome P450, family 27, subfamily b, polypeptide 1; CRISPR/Cas9 induced mutant 1, Thka treatment IMP RGD PMID:32231239 RGD:32716373
G Cyp2r1 cytochrome P450, family 2, subfamily r, polypeptide 1 ISO ClinVar Annotator: match by term: VITAMIN D DEPENDENCY, TYPE 1 ClinVar PMID:8201479 PMID:10969262 PMID:15128933 PMID:16549493 PMID:24033266 More... NCBI chr 1:168,749,302...168,798,079
Ensembl chr 1:168,751,038...168,797,759 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  disease 18110
    disease of anatomical entity 17482
      hematopoietic system disease 2800
        vitamin D-dependent rickets 12
          vitamin D-dependent rickets type 1A 4
Path 2
Term Annotations click to browse term
  disease 18110
    Nutritional and Metabolic Diseases 6748
      disease of metabolism 6748
        acquired metabolic disease 2143
          nutrition disease 1039
            Malnutrition 308
              nutritional deficiency disease 299
                Avitaminosis 195
                  Vitamin D Deficiency 34
                    rickets 29
                      vitamin D-dependent rickets 12
                        vitamin D-dependent rickets type 1A 4
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