Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References FTP Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) RatMine GViewer (Genome Viewer) Overgo Probe Designer ACP Haplotyper Genome Scanner
Aging & Age-Related Disease Cancer Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.
Term:karyomegalic interstitial nephritis
go back to main search page
Accession:DOID:0060911 term browser browse the term
Definition:An interstitial nephritis characterized by nephritis, interstitial fibrosis, and enlarged and atypical tubular epithelial cell nuclei that has_material_basis_in homozygous or compound heterozygous mutation in the FAN1 gene on chromosome 15q13.3. (DO)
Synonyms:exact_synonym: KIN;   KMIN
 primary_id: OMIM:614817
 xref: GARD:11003;   ICD10CM:N11.8;   NCI:C173626;   ORDO:401996
For additional species annotation, visit the Alliance of Genome Resources.

show annotations for term's descendants           Sort by:
 
karyomegalic interstitial nephritis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fan1 FANCD2 and FANCI associated nuclease 1 ISO ClinVar Annotator: match by OMIM:614817
ClinVar Annotator: match by This custom term has been created by RGD curators.
ClinVar Annotator: match by term: Interstitial nephritis, karyomegalic		 OMIM
ClinVar		 PMID:7847351 PMID:8546134 PMID:16678356 PMID:17304531 PMID:20621605 PMID:22772369 PMID:25741868 PMID:28492532 PMID:29590070 NCBI chr 1:125,182,117...125,209,772
Ensembl chr 1:125,181,838...125,209,727 		JBrowse link
G Mtmr10 myotubularin related protein 10 ISO ClinVar Annotator: match by term: Interstitial nephritis, karyomegalic ClinVar PMID:7847351 PMID:16678356 PMID:17304531 PMID:20621605 PMID:22772369 PMID:25741868 NCBI chr 1:125,124,743...125,175,857
Ensembl chr 1:125,124,743...125,175,857 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  disease 16092
    disease of anatomical entity 0
      Immune & Inflammatory Diseases 3577
        Inflammation 2229
          nephritis 425
            interstitial nephritis 42
              karyomegalic interstitial nephritis 2
Path 2
Term Annotations click to browse term
  disease 16092
    Developmental Diseases 9588
      Congenital, Hereditary, and Neonatal Diseases and Abnormalities 8436
        genetic disease 7958
          monogenic disease 5739
            autosomal genetic disease 4756
              autosomal recessive disease 2617
                karyomegalic interstitial nephritis 2
paths to the root