RGD DISEASE ONTOLOGY - ANNOTATIONS
RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.
Term: isolated growth hormone deficiency
Accession: DOID:0060870
browse the term
Definition: A form of dwarfism caused by complete or partial GROWTH HORMONE deficiency, resulting from either the lack of GROWTH HORMONE-RELEASING FACTOR from the HYPOTHALAMUS or from the mutations in the growth hormone gene (GH1) in the PITUITARY GLAND. It is also known as Type I pituitary dwarfism. Human hypophysial dwarf is caused by a deficiency of HUMAN GROWTH HORMONE during development.
Synonyms: exact_synonym: Dwarfism, Pituitary; Growth Hormone Deficiency Dwarfism; Hypophysial Dwarf; Hyposomatotrophic Dwarfism; IGHD; Isolated GH Deficiency; Isolated HGH Deficiency; Isolated Human Growth Hormone Deficiency; Isolated Somatotropin Deficiency; Isolated Somatotropin Deficiency Disorder; Pituitary Dwarf; Pituitary Nanism; congenital IGHD; congenital isolated GH deficiency; congenital isolated growth hormone deficiency; familial isolated growth hormone deficiency; non-acquired isolated growth hormone deficiency
broad_synonym: GROWTH HORMONE DEFICIENCY
primary_id: MESH:D004393
alt_id: OMIA:000307; RDO:0002370
xref: GARD:12556 ; ICD9CM:253.3 ; NCI:C34555 ; OMIM:PS262400 ; ORDO:631
For additional species annotation, visit the
Alliance of Genome Resources .
G
Cep85l
centrosomal protein 85-like
ISO
ClinVar Annotator: match by term: Growth hormone deficiency
ClinVar
NCBI chr20:34,574,043...34,743,142
Ensembl chr20:34,575,950...34,684,418
G
Gh1
growth hormone 1
ISO IAGP
DNA:deletions: : ClinVar Annotator: match by term: Growth hormone deficiency
ClinVar
PMID:9152628 PMID:12655556 PMID:12655557 PMID:13572267 PMID:15001589 PMID:16741161 PMID:17223997 PMID:18160466 PMID:18473352 PMID:18785993 PMID:18950677 PMID:23182822 PMID:24635352 PMID:25741868 PMID:26467025 PMID:28492532 , PMID:27114065 , PMID:2752987
RGD:12904703 , RGD:1578505
NCBI chr10:94,486,204...94,488,181
Ensembl chr10:94,486,205...94,488,180
G
Gh1sdr
IAGP
RGD
PMID:2752987
RGD:1578505
G
Ghr
growth hormone receptor
ISO
Laron syndrome,OMIM:262500;DNA:deletion
RGD
PMID:2813379
RGD:1601315
NCBI chr 2:53,149,225...53,413,954
Ensembl chr 2:53,150,370...53,413,638
G
Ghrhr
growth hormone releasing hormone receptor
ISO IAGP
isolated growth hormone deficiency IB,OMIM:262400;DNA:point mutation:exon:E72X ClinVar Annotator: match by term: Isolated growth hormone deficiency DNA:deletion
ClinVar
PMID:8528260 , PMID:9845677
RGD:1601337 , RGD:1601338
NCBI chr 4:85,587,321...85,602,389
Ensembl chr 4:85,588,595...85,601,666
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Ghsr
growth hormone secretagogue receptor
IEP
mRNA:increased expression:pituitary:
RGD
PMID:9822798
RGD:12904721
NCBI chr 2:113,065,953...113,071,265
Ensembl chr 2:113,066,885...113,070,261
G
Hpca
hippocalcin
ISO
protein:altered expression:cerebral cortex, cerebellum, hippocampus (mouse)
RGD
PMID:7882001
RGD:9693682
NCBI chr 5:147,295,124...147,305,757
Ensembl chr 5:147,294,820...147,303,346
G
Igfals
insulin-like growth factor binding protein, acid labile subunit
ISO
protein:decreased expression:serum
RGD
PMID:11248743
RGD:12910859
NCBI chr10:14,240,308...14,243,554
Ensembl chr10:14,240,219...14,243,597
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Pln
phospholamban
ISO
ClinVar Annotator: match by term: Growth hormone deficiency
ClinVar
NCBI chr20:34,633,157...34,642,904
Ensembl chr20:34,633,157...34,642,904
G
Pou1f1
POU class 1 homeobox 1
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:9392392
NCBI chr11:2,645,659...2,662,581
Ensembl chr11:2,645,865...2,662,579
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Tg
thyroglobulin
IAGP
RGD
PMID:11089535 , PMID:3366187
RGD:730133 , RGD:12880373
NCBI chr 7:107,467,260...107,652,897
Ensembl chr 7:107,467,260...107,652,899
G
Tgrdw
thyroglobulin; rdw mutant
IAGP
RGD
PMID:11089535 , PMID:3366187
RGD:730133 , RGD:12880373
G
Larp7
La ribonucleoprotein 7, transcriptional regulator
ISO
ClinVar Annotator: match by term: Alazami syndrome ClinVar Annotator: match by OMIM:615071 ClinVar Annotator: match by This custom term has been created by RGD curators.
OMIM ClinVar
PMID:22865833 PMID:25741868 PMID:30006060 PMID:30311386 PMID:32860008
NCBI chr 2:231,866,888...231,882,002
Ensembl chr 2:231,867,135...231,881,939
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Iars2
isoleucyl-tRNA synthetase 2, mitochondrial
ISO
ClinVar Annotator: match by term: Cataracts, growth hormone deficiency, sensory neuropathy, sensorineural hearing loss, and skeletal dysplasia
OMIM ClinVar
PMID:8409271 PMID:25130867 PMID:25741868 PMID:28328135 PMID:28492532 PMID:30041933 PMID:30419932
NCBI chr13:103,229,868...103,265,019
Ensembl chr13:103,231,387...103,264,906
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Chmp2b
charged multivesicular body protein 2B
ISO
ClinVar Annotator: match by term: Combined Pituitary Hormone Deficiency, Recessive
ClinVar
PMID:26467025 PMID:28492532
NCBI chr11:2,666,405...2,692,213
Ensembl chr11:2,665,285...2,692,198
G
Lhx3
LIM homeobox 3
ISO
ClinVar Annotator: match by term: Combined Pituitary Hormone Deficiency, Recessive
ClinVar
NCBI chr 3:3,653,861...3,662,509
Ensembl chr 3:3,654,755...3,661,810
G
Pou1f1
POU class 1 homeobox 1
ISO
ClinVar Annotator: match by term: Combined Pituitary Hormone Deficiency, Recessive
ClinVar
PMID:25741868 PMID:26467025 PMID:28492532
NCBI chr11:2,645,659...2,662,581
Ensembl chr11:2,645,865...2,662,579
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Prop1
PROP paired-like homeobox 1
ISO
ClinVar Annotator: match by term: Pituitary hormone deficiency, combined 2 ClinVar Annotator: match by term: Combined Pituitary Hormone Deficiency, Recessive ClinVar Annotator: match by OMIM:262600
OMIM ClinVar
PMID:9462743 PMID:9661653 PMID:9768691 PMID:9824293 PMID:10323394 PMID:10599689 PMID:10946881 PMID:11134108 PMID:11549674 PMID:11549703 PMID:12153609 PMID:12519826 PMID:14614227 PMID:15126542 PMID:15472232 PMID:15531542 PMID:15670191 PMID:15941866 PMID:15963055 PMID:16131601 PMID:16544023 PMID:16735499 PMID:16984240 PMID:17526936 PMID:17526949 PMID:18157385 PMID:19128366 PMID:20381582 PMID:20981092 PMID:21132537 PMID:21863341 PMID:22024773 PMID:22111336 PMID:24033266 PMID:25557026 PMID:25741868 PMID:26467025 PMID:26608600 PMID:26886902 PMID:28492532 PMID:28734020 PMID:30266296 PMID:30311386
NCBI chr10:36,449,920...36,452,381
Ensembl chr10:36,449,920...36,452,378
G
Lhx3
LIM homeobox 3
ISO
ClinVar Annotator: match by term: Winkelman Bethge Pfeiffer syndrome ClinVar Annotator: match by term: Pituitary hormone deficiency, combined 3 ClinVar Annotator: match by OMIM:221750
OMIM ClinVar
PMID:10835633 PMID:12780757 PMID:16394081 PMID:16940453 PMID:17327381 PMID:17438671 PMID:18407919 PMID:19837867 PMID:25741868 PMID:28492532
NCBI chr 3:3,653,861...3,662,509
Ensembl chr 3:3,654,755...3,661,810
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Acbd6
acyl-CoA binding domain containing 6
ISO
ClinVar Annotator: match by term: Pituitary hormone deficiency, combined 4 ClinVar Annotator: match by term: Short stature, pituitary and cerebellar defects and small sella turcica ClinVar Annotator: match by term: Pituitary hormone deficiency, combined with or without cerebellar defects
ClinVar
PMID:11567216 PMID:17201807 PMID:17527005 PMID:18445675 PMID:20534763 PMID:23990694 PMID:24033266 PMID:25741868 PMID:25910213 PMID:28492532
NCBI chr13:73,196,504...73,334,077
Ensembl chr13:73,196,571...73,334,077
G
Lhx4
LIM homeobox 4
ISO
ClinVar Annotator: match by term: Short stature, pituitary and cerebellar defects and small sella turcica ClinVar Annotator: match by term: Pituitary hormone deficiency, combined with or without cerebellar defects ClinVar Annotator: match by OMIM:262700 ClinVar Annotator: match by term: Pituitary hormone deficiency, combined 4
OMIM ClinVar
PMID:11567216 PMID:17201807 PMID:17527005 PMID:18445675 PMID:20534763 PMID:23029363 PMID:23990694 PMID:24033266 PMID:25741868 PMID:25910213 PMID:28492532
NCBI chr13:73,348,874...73,400,416
Ensembl chr13:73,348,842...73,400,416
G
Ghr
growth hormone receptor
ISO
ClinVar Annotator: match by term: Short stature, idiopathic, autosomal ClinVar Annotator: match by OMIM:604271
OMIM ClinVar
PMID:7565946 PMID:8504296 PMID:9140387 PMID:9814495 PMID:12217488 PMID:17274879 PMID:17462934 PMID:21525302 PMID:21846964 PMID:21900382 PMID:24150201 PMID:25741868 PMID:26467025 PMID:27408750 PMID:28492532 PMID:28498917
NCBI chr 2:53,149,225...53,413,954
Ensembl chr 2:53,150,370...53,413,638
G
Ghsr
growth hormone secretagogue receptor
ISO
ClinVar Annotator: match by term: Short stature, idiopathic, autosomal
ClinVar
NCBI chr 2:113,065,953...113,071,265
Ensembl chr 2:113,066,885...113,070,261
G
Igfals
insulin-like growth factor binding protein, acid labile subunit
ISO
DNA:missense mutation:exon:p.L127P (c.380T>C) (human)
RGD
PMID:23488611
RGD:12910853
NCBI chr10:14,240,308...14,243,554
Ensembl chr10:14,240,219...14,243,597
G
Spag17
sperm associated antigen 17
ISO
DNA:snp:enhancer:C>G (rs17038182) (human)
RGD
PMID:19893584
RGD:11535959
NCBI chr 2:202,159,659...202,452,361
Ensembl chr 2:202,200,797...202,443,026
G
Brca2
BRCA2, DNA repair associated
ISO
ClinVar Annotator: match by term: Primordial dwarfism
ClinVar
PMID:24389050 PMID:25558065
NCBI chr12:503,660...544,754
Ensembl chr12:504,007...544,748
G
Cript
CXXC repeat containing interactor of PDZ3 domain
ISO
ClinVar Annotator: match by synonym: Primordial Dwarfism ClinVar Annotator: match by term: Primordial Dwarfism
ClinVar
PMID:24389050 PMID:25558065
NCBI chr 6:10,594,147...10,602,103
Ensembl chr 6:10,594,122...10,602,085
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Dna2
DNA replication helicase/nuclease 2
ISO
DNA:mutation:cds:
RGD
PMID:24389050
RGD:8694132
G
Gh1
growth hormone 1
ISO
ClinVar Annotator: match by OMIM:262400 ClinVar Annotator: match by term: Pituitary dwarfism 1 ClinVar Annotator: match by term: PITUITARY DWARFISM I DNA:deletion: : ClinVar Annotator: match by term: Isolated growth hormone deficiency type 1B
ClinVar OMIM
PMID:2347891 PMID:8364549 PMID:8496314 PMID:9152628 PMID:10678654 PMID:10689634 PMID:12655557 PMID:15001589 PMID:18160466 PMID:18950677 PMID:25741868 PMID:26467025 PMID:28492532 , PMID:14594175
RGD:12904729
NCBI chr10:94,486,204...94,488,181
Ensembl chr10:94,486,205...94,488,180
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Ghrh
growth hormone releasing hormone
ISS
OMIM:262400
MouseDO
NCBI chr 3:153,449,124...153,468,794
Ensembl chr 3:153,449,125...153,468,794
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Ghrhr
growth hormone releasing hormone receptor
ISO
ClinVar Annotator: match by term: Isolated growth hormone deficiency type 1B
ClinVar
PMID:10944436 PMID:10946881 PMID:11298081 PMID:11502843 PMID:12163232 PMID:12181638 PMID:12414875 PMID:16284391 PMID:18297129 PMID:19622623 PMID:21044116 PMID:22489751 PMID:25541890 PMID:28492532
NCBI chr 4:85,587,321...85,602,389
Ensembl chr 4:85,588,595...85,601,666
G
Poc1a
POC1 centriolar protein A
ISO
ClinVar Annotator: match by term: Primordial dwarfism
ClinVar
PMID:22840364 PMID:25558065 PMID:25741868
NCBI chr 8:114,982,764...115,050,844
Ensembl chr 8:114,986,326...115,050,728
G
Xrcc4
X-ray repair cross complementing 4
ISO
ClinVar Annotator: match by term: Pituitary dwarfism 1
ClinVar
PMID:24389050 PMID:25558065 PMID:25728776 PMID:25741868 PMID:26255102
NCBI chr 2:18,674,496...18,927,463
Ensembl chr 2:18,677,220...18,927,365
G
Gh1
growth hormone 1
ISO
ClinVar Annotator: match by term: Isolated Growth Hormone Deficiency, Type IB
OMIM ClinVar
PMID:9152628 PMID:12655557 PMID:15001589 PMID:18160466 PMID:18950677 PMID:26467025 PMID:28492532
NCBI chr10:94,486,204...94,488,181
Ensembl chr10:94,486,205...94,488,180
G
Ghrhr
growth hormone releasing hormone receptor
ISO
ClinVar Annotator: match by term: Idiopathic growth hormone deficiency ClinVar Annotator: match by term: DWARFISM OF SINDH
ClinVar
PMID:8528260 PMID:9467553 PMID:9814493 PMID:10084571 PMID:10566659 PMID:10944436 PMID:10946881 PMID:11232012 PMID:11298081 PMID:11443201 PMID:11502843 PMID:11875102 PMID:12163232 PMID:12181638 PMID:12414875 PMID:12788864 PMID:12794696 PMID:16284391 PMID:16522693 PMID:17356054 PMID:17911170 PMID:18297129 PMID:19622623
NCBI chr 4:85,587,321...85,602,389
Ensembl chr 4:85,588,595...85,601,666
G
Gh1
growth hormone 1
ISO
ClinVar Annotator: match by OMIM:173100 ClinVar Annotator: match by term: Pituitary dwarfism due to isolated growth hormone deficiency autosomal dominant ClinVar Annotator: match by term: IGHD II
ClinVar OMIM
PMID:7567462 PMID:7714096 PMID:8530604 PMID:8923859 PMID:9152628 PMID:9175738 PMID:9432120 PMID:9554464 PMID:9578959 PMID:9700205 PMID:9799079 PMID:10372722 PMID:10445339 PMID:10469016 PMID:10549303 PMID:10629163 PMID:10698162 PMID:11502827 PMID:11502836 PMID:11836331 PMID:11914025 PMID:12000366 PMID:12399418 PMID:12510984 PMID:12574219 PMID:12655557 PMID:12720086 PMID:15001589 PMID:15671105 PMID:16368751 PMID:16491012 PMID:17038549 PMID:17073157 PMID:17178704 PMID:17336732 PMID:17360215 PMID:17726075 PMID:17785368 PMID:18160466 PMID:18473352 PMID:18554279 PMID:18785993 PMID:18950677 PMID:20351314 PMID:23736291 PMID:26467025 PMID:27253996 PMID:28492532 PMID:28626954 PMID:29739035
NCBI chr10:94,486,204...94,488,181
Ensembl chr10:94,486,205...94,488,180
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Btk
Bruton tyrosine kinase
ISO
ClinVar Annotator: match by term: X-linked agammaglobulinemia with growth hormone deficiency ClinVar Annotator: match by term: IGHD III ClinVar Annotator: match by OMIM:307200
OMIM ClinVar
PMID:3486747 PMID:7633420 PMID:7633429 PMID:7678697 PMID:7711734 PMID:7809124 PMID:7849697 PMID:7849721 PMID:7880320 PMID:8013627 PMID:8090769 PMID:8162018 PMID:8162056 PMID:8332900 PMID:8332901 PMID:8380905 PMID:8562928 PMID:8594569 PMID:8644706 PMID:8695804 PMID:8723128 PMID:8834236 PMID:8938104 PMID:8939985 PMID:9106525 PMID:9143921 PMID:9188445 PMID:9192269 PMID:9260159 PMID:9445504 PMID:9524120 PMID:9545398 PMID:9880544 PMID:10092645 PMID:10373551 PMID:10737994 PMID:10844531 PMID:10859027 PMID:11206059 PMID:11410123 PMID:11438999 PMID:11445810 PMID:11472359 PMID:11527964 PMID:11668622 PMID:11742281 PMID:12204007 PMID:12217331 PMID:12405164 PMID:12655572 PMID:14974089 PMID:15661032 PMID:16159644 PMID:16297664 PMID:16712653 PMID:16862044 PMID:16943681 PMID:16951917 PMID:17045652 PMID:17327079 PMID:17765309 PMID:18241230 PMID:18518992 PMID:18677443 PMID:19039656 PMID:19419768 PMID:19904586 PMID:20529312 PMID:21039741 PMID:21520333 PMID:23335184 PMID:23424595 PMID:24001798 PMID:24033266 PMID:24586880 PMID:24869598 PMID:24885015 PMID:25082755 PMID:25189416 PMID:25270678 PMID:25741868 PMID:25777788 PMID:26915675 PMID:27199251 PMID:27512878 PMID:27577878 PMID:27593100 PMID:27980540 PMID:28049639 PMID:28212557 PMID:28359783 PMID:28398200 PMID:28418267 PMID:28492532 PMID:29424453 PMID:29496671 PMID:29503650 PMID:29875397 PMID:30018078 PMID:30072168 PMID:30290665 PMID:30311057 PMID:30564228
NCBI chr X:105,360,922...105,390,580
Ensembl chr X:105,360,922...105,390,580
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Rnpc3
RNA-binding region (RNP1, RRM) containing 3
ISO
ClinVar Annotator: match by term: ISOLATED GROWTH HORMONE DEFICIENCY, TYPE V
ClinVar OMIM
PMID:24480542 PMID:29255062
NCBI chr 2:216,481,457...216,510,051
Ensembl chr 2:216,481,436...216,509,827
G
Ghsr
growth hormone secretagogue receptor
ISO
ClinVar Annotator: match by term: Short stature due to growth hormone secretagogue receptor deficiency
ClinVar OMIM
PMID:16511605 PMID:19789204 PMID:25741868 PMID:26094658 PMID:28492532
NCBI chr 2:113,065,953...113,071,265
Ensembl chr 2:113,066,885...113,070,261
G
Gh1
growth hormone 1
ISO
DNA:point mutation:exon:p.D122G (human) ClinVar Annotator: match by term: Kowarski syndrome ClinVar Annotator: match by OMIM:262650
ClinVar OMIM
PMID:8552145 PMID:9152628 PMID:9276733 PMID:12655557 PMID:15001589 PMID:15713716 PMID:17519310 PMID:18160466 PMID:18950677 PMID:26467025 PMID:28492532 , PMID:9276733
RGD:1601313
NCBI chr10:94,486,204...94,488,181
Ensembl chr10:94,486,205...94,488,180
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Sox3
SRY-box transcription factor 3
ISO
ClinVar Annotator: match by term: Mental retardation, X-linked, with isolated growth hormone deficiency DNA:duplication:cds:c.712_744dup (human)
ClinVar
PMID:8826446 PMID:12428212 , PMID:12428212
RGD:11535974
NCBI chr X:144,035,162...144,037,364
Ensembl chr X:144,035,883...144,037,294
Term paths to the root one shortest all shortest one longest all longest one shortest and longest all
Path 1
disease
16085
disease of anatomical entity
15340
endocrine system disease
5009
Endocrine Bone Diseases
88
isolated growth hormone deficiency
31
Alazami Syndrome
1
CATARACTS, GROWTH HORMONE DEFICIENCY, SENSORY NEUROPATHY, SENSORINEURAL HEARING LOSS, AND SKELETAL DYSPLASIA
1
Combined Pituitary Hormone Deficiency, 2
4
Combined Pituitary Hormone Deficiency, 3
1
Combined Pituitary Hormone Deficiency, 4
2
Encephalopathy with Intracranial Calcification, Growth Hormone Deficiency, Microcephaly, and Retinal Degeneration
0
Idiopathic Short Stature, Autosomal
4
Isolated Growth Hormone Deficiency Type V
1
Isolated Growth Hormone Deficiency, Partial
1
Kowarski Syndrome
1
Mental Retardation, X-Linked, with Isolated Growth Hormone Deficiency
1
Pituitary Dwarfism with Large Sella Turcica
0
isolated growth hormone deficiency type IA
8
isolated growth hormone deficiency type IB
2
isolated growth hormone deficiency type II
1
isolated growth hormone deficiency type III
1
Path 2
disease
16085
disease of anatomical entity
15340
nervous system disease
10967
central nervous system disease
9119
brain disease
8448
thalamic disease
216
hypothalamic disease
216
pituitary gland disease
170
hypopituitarism
45
isolated growth hormone deficiency
31
Alazami Syndrome
1
CATARACTS, GROWTH HORMONE DEFICIENCY, SENSORY NEUROPATHY, SENSORINEURAL HEARING LOSS, AND SKELETAL DYSPLASIA
1
Combined Pituitary Hormone Deficiency, 2
4
Combined Pituitary Hormone Deficiency, 3
1
Combined Pituitary Hormone Deficiency, 4
2
Encephalopathy with Intracranial Calcification, Growth Hormone Deficiency, Microcephaly, and Retinal Degeneration
0
Idiopathic Short Stature, Autosomal
4
Isolated Growth Hormone Deficiency Type V
1
Isolated Growth Hormone Deficiency, Partial
1
Kowarski Syndrome
1
Mental Retardation, X-Linked, with Isolated Growth Hormone Deficiency
1
Pituitary Dwarfism with Large Sella Turcica
0
isolated growth hormone deficiency type IA
8
isolated growth hormone deficiency type IB
2
isolated growth hormone deficiency type II
1
isolated growth hormone deficiency type III
1