RGD DISEASE ONTOLOGY - ANNOTATIONS
RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.
Term: salmonellosis
Accession: DOID:0060859
browse the term
Definition: A primary bacterial infectious disease caused by the bacteria of the genus Salmonella. It has symptoms diarrhea, fever, vomiting, and abdominal cramps 12 to 72 hours after infection. In most cases, the illness lasts four to seven days, and most people recover without treatment. (DO)
Synonyms: exact_synonym: salmonella infection; salmonella infections; salmonelloses
primary_id: MESH:D012480
xref: EFO:1001418 ; ICD10CM:A02.0 ; ICD9CM:003.0
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Coq7
coenzyme Q7, hydroxylase
susceptibility
ISO
RGD
PMID:23166727
RGD:10402105
NCBI chr 1:172,836,359...172,851,173
Ensembl chr 1:172,835,188...172,851,158
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Il12b
interleukin 12B
susceptibility
ISO
disseminated BCG and Salmonella enteritidis infection, OMIM:209950
RGD
PMID:9854038
RGD:1600042
NCBI chr10:29,390,300...29,405,194
Ensembl chr10:28,893,008...28,902,903
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Adar
adenosine deaminase, RNA-specific
ISO
mRNA:splice variant:liver (mouse)
RGD
PMID:12228285
RGD:125097511
NCBI chr 2:177,436,076...177,475,969
Ensembl chr 2:175,138,403...175,178,282
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Ahr
aryl hydrocarbon receptor
severity
ISO
RGD
PMID:24930766
RGD:39939032
NCBI chr 6:57,961,423...57,998,901
Ensembl chr 6:52,234,089...52,271,568
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Aicda
activation-induced cytidine deaminase
severity
ISO
RGD
PMID:29743315
RGD:127285640
NCBI chr 4:157,446,120...157,455,958
Ensembl chr 4:155,774,132...155,783,972
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Ank1
ankyrin 1
ISO
RGD
PMID:23390527
RGD:11041609
NCBI chr16:75,578,824...75,757,464
Ensembl chr16:68,877,504...69,054,759
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Hamp
hepcidin antimicrobial peptide
ISO
RGD
PMID:23390527
RGD:11041609
NCBI chr 1:95,298,332...95,300,271
Ensembl chr 1:86,170,901...86,172,891
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Ido1
indoleamine 2,3-dioxygenase 1
susceptibility
ISO
RGD
PMID:24930766
RGD:39939032
NCBI chr16:74,133,259...74,145,328
Ensembl chr16:67,430,578...67,442,730
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Ifng
interferon gamma
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:16002714
NCBI chr 7:55,789,180...55,793,216
Ensembl chr 7:53,903,337...53,907,375
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Slc11a1
solute carrier family 11 member 1
ISO
RGD
PMID:14734525
RGD:5684962
NCBI chr 9:83,406,327...83,417,252
Ensembl chr 9:75,957,316...75,968,101
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Tlr5
toll-like receptor 5
IEP
mRNA, protein:increased expression:jejunum, colon (rat)
RGD
PMID:20529359
RGD:5129497
NCBI chr13:97,166,430...97,190,642
Ensembl chr13:94,634,801...94,657,738
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Cftr
CF transmembrane conductance regulator
susceptibility
ISO
DNA:repeats: :CA repeats(human)
RGD
PMID:16078047
RGD:35673348
NCBI chr 4:47,422,084...47,694,646
Ensembl chr 4:46,560,885...46,728,756
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Lta
lymphotoxin alpha
susceptibility
ISO
DNA:SNP::
RGD
PMID:11120931
RGD:36049756
NCBI chr20:3,622,291...3,625,852
Ensembl chr20:3,618,853...3,620,859
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RT1-Bb
RT1 class II, locus Bb
susceptibility
ISO
DNA:polymorphisms::
RGD
PMID:11120931
RGD:36049756
NCBI chr20:4,598,475...4,604,118
Ensembl chr20:4,596,559...4,607,597
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RT1-Db1
RT1 class II, locus Db1
susceptibility
ISO
CTD Direct Evidence: marker/mechanism DNA:polymorphism: :HLA-DRB1*04:05, rs7765379(human) DNA:polymorphisms::
CTD RGD
PMID:25383971 PMID:25383971 PMID:11120931
RGD:36174025 , RGD:36049756
NCBI chr20:4,550,594...4,560,182
Ensembl chr20:4,548,666...4,558,258
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Tlr2
toll-like receptor 2
ISO
RGD
PMID:25667264
RGD:11061268
NCBI chr 2:171,499,189...171,504,831
Ensembl chr 2:169,197,419...169,206,630
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Tnf
tumor necrosis factor
susceptibility
ISO
DNA:SNP:promoter:-308G>A (rs1800629) (human)
RGD
PMID:11120931
RGD:36049756
NCBI chr20:3,626,685...3,629,303
Ensembl chr20:3,622,011...3,624,629
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