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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.
Term:thoracic disease
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Accession:DOID:0060118 term browser browse the term
Definition:A disease of anatomical entity that is located_in the thoracic cavity. (DO)
Synonyms:exact_synonym: thoracic diseases
 primary_id: MESH:D013896
For additional species annotation, visit the Alliance of Genome Resources.

GViewer not supported for the selected species.

show annotations for term's descendants           Sort by:
thoracic disease term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atrx ATRX chromatin remodeler ISO CTD Direct Evidence: marker/mechanism CTD PMID:19291773 NCBI chrNW_004936683:2,496,307...2,718,539
Ensembl chrNW_004936683:2,495,959...2,718,620 		JBrowse link
G Ift80 intraflagellar transport 80 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17468754 NCBI chrNW_004936708:238,302...362,537
Ensembl chrNW_004936708:238,268...362,519 		JBrowse link
G Ilk integrin linked kinase ISO CTD Direct Evidence: marker/mechanism CTD PMID:23045294 NCBI chrNW_004936842:661,961...667,993
Ensembl chrNW_004936842:661,996...667,993 		JBrowse link
17-beta hydroxysteroid dehydrogenase 3 deficiency term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col5a1 collagen type V alpha 1 chain ISO ClinVar Annotator: match by term: Pseudohermaphroditism male with gynecomastia ClinVar PMID:25326637 PMID:25741868 PMID:28492532 NCBI chrNW_004936669:2,474,381...2,613,541
Ensembl chrNW_004936669:2,476,818...2,580,891 		JBrowse link
G Hsd17b3 hydroxysteroid 17-beta dehydrogenase 3 ISO ClinVar Annotator: match by term: Testosterone 17-beta-dehydrogenase deficiency OMIM
ClinVar		 PMID:598011 PMID:2918056 PMID:8075637 PMID:8550739 PMID:8626842 More... NCBI chrNW_004936487:228,301...282,495
Ensembl chrNW_004936487:228,557...245,295 		JBrowse link
adenosquamous lung carcinoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ttr transthyretin ISO protein:increased expression:lung (human) RGD PMID:26943652 RGD:151665207 NCBI chrNW_004936682:1,628,489...1,635,495
Ensembl chrNW_004936682:1,628,341...1,635,566 		JBrowse link
Animal Mammary Neoplasms term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acsl1 acyl-CoA synthetase long chain family member 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16316942 NCBI chrNW_004936554:4,425,518...4,484,853
Ensembl chrNW_004936554:4,425,495...4,484,887 		JBrowse link
G Actb actin beta ISO CTD Direct Evidence: marker/mechanism CTD PMID:16316942 NCBI chrNW_004936765:667,107...670,627
Ensembl chrNW_004936765:667,053...670,672 		JBrowse link
G Actg1 actin gamma 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16316942 NCBI chrNW_004936594:5,170,711...5,173,251 JBrowse link
G Actn4 actinin alpha 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:12376462 NCBI chrNW_004936801:1,333,077...1,402,885
Ensembl chrNW_004936801:1,333,077...1,404,054 		JBrowse link
G Adcy5 adenylate cyclase 5 ISO CTD Direct Evidence: marker/mechanism CTD PMID:12376462 NCBI chrNW_004936725:1,751,272...1,897,937
Ensembl chrNW_004936725:1,751,266...1,897,946 		JBrowse link
G Alcam activated leukocyte cell adhesion molecule ISO CTD Direct Evidence: marker/mechanism CTD PMID:16316942 NCBI chrNW_004936701:895,414...1,084,155
Ensembl chrNW_004936701:895,376...1,084,172 		JBrowse link
G Anxa1 annexin A1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:12376462 PMID:16316942 PMID:22248470 NCBI chrNW_004936503:9,124,314...9,142,372
Ensembl chrNW_004936503:9,124,264...9,142,413 		JBrowse link
G Anxa2 annexin A2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22248470 NCBI chrNW_004936471:21,274,112...21,329,286
Ensembl chrNW_004936471:21,274,027...21,329,503 		JBrowse link
G Anxa4 annexin A4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16316942 NCBI chrNW_004936491:13,982,926...14,047,690
Ensembl chrNW_004936491:13,982,677...14,047,690 		JBrowse link
G Apc APC regulator of WNT signaling pathway ISO CTD Direct Evidence: marker/mechanism CTD PMID:9111214 NCBI chrNW_004936531:6,899,580...7,019,016
Ensembl chrNW_004936531:6,899,788...7,019,453 		JBrowse link
G Aqp1 aquaporin 1 (Colton blood group) ISO CTD Direct Evidence: marker/mechanism CTD PMID:12376462 NCBI chrNW_004936478:7,146,997...7,160,369
Ensembl chrNW_004936478:7,147,027...7,160,401 		JBrowse link
G Areg amphiregulin ISO mRNA:increased expression:mammary gland RGD PMID:18421211 RGD:2292665 NCBI chrNW_004936598:1,276,599...1,283,612
Ensembl chrNW_004936598:1,274,565...1,283,746 		JBrowse link
G Atp5if1 ATP synthase inhibitory factor subunit 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:12376462 PMID:16316942 NCBI chrNW_004936474:12,396,416...12,399,760
Ensembl chrNW_004936474:12,396,023...12,401,023 		JBrowse link
G Basp1 brain abundant membrane attached signal protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:12376462 NCBI chrNW_004936480:19,695,949...19,812,681 JBrowse link
G Brca1 BRCA1 DNA repair associated ISO CTD Direct Evidence: marker/mechanism CTD PMID:12203372 NCBI chrNW_004936490:17,735,444...17,801,456 JBrowse link
G Capzb capping actin protein of muscle Z-line subunit beta ISO CTD Direct Evidence: marker/mechanism CTD PMID:16316942 NCBI chrNW_004936474:5,594,193...5,656,665
Ensembl chrNW_004936474:5,594,152...5,709,315 		JBrowse link
G Cask calcium/calmodulin dependent serine protein kinase ISO CTD Direct Evidence: marker/mechanism CTD PMID:12376462 NCBI chrNW_004936502:7,933,312...8,281,492
Ensembl chrNW_004936502:7,937,146...8,281,492 		JBrowse link
G Ccnd1 cyclin D1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:12376462 PMID:14522882 PMID:16316942 PMID:17173897 Ensembl chrNW_004936599:973,838...983,316 JBrowse link
G Ccnh cyclin H ISO CTD Direct Evidence: marker/mechanism CTD PMID:12606953 NCBI chrNW_004936469:5,933,163...5,952,190
Ensembl chrNW_004936469:5,935,131...5,952,460 		JBrowse link
G Ccr3 C-C motif chemokine receptor 3 ISO RGD PMID:19787232 RGD:6893387 NCBI chrNW_004936596:223,660...224,739
Ensembl chrNW_004936596:223,660...224,739 		JBrowse link
G Cd40 CD40 molecule treatment ISO RGD PMID:15922965 RGD:8547789 NCBI chrNW_004936514:6,936,915...6,947,246
Ensembl chrNW_004936514:6,936,572...6,947,280 		JBrowse link
G Cdc42 cell division cycle 42 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16316942 NCBI chrNW_004936474:7,556,765...7,598,687 JBrowse link
G Cdh1 cadherin 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16316942 NCBI chrNW_004936475:18,990,529...19,065,954
Ensembl chrNW_004936475:18,990,474...19,067,203 		JBrowse link
G Cdk4 cyclin dependent kinase 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:12376462 PMID:14522882 NCBI chrNW_004936646:1,886,262...1,889,260 JBrowse link
G Cdkn1a cyclin dependent kinase inhibitor 1A onset ISO RGD PMID:11103935 RGD:8662404 NCBI chrNW_004936476:22,717,308...22,725,127
Ensembl chrNW_004936476:22,717,260...22,725,182 		JBrowse link
G Cds1 CDP-diacylglycerol synthase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16316942 NCBI chrNW_004936738:160,346...227,687
Ensembl chrNW_004936738:160,338...227,775 		JBrowse link
G Cnn3 calponin 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:12376462 NCBI chrNW_004936537:4,308,951...4,337,990
Ensembl chrNW_004936537:4,308,951...4,337,998 		JBrowse link
G Col5a1 collagen type V alpha 1 chain ISO CTD Direct Evidence: marker/mechanism CTD PMID:12376462 NCBI chrNW_004936669:2,474,381...2,613,541
Ensembl chrNW_004936669:2,476,818...2,580,891 		JBrowse link
G Comt catechol-O-methyltransferase ISO protein:increased expression:mammary gland, cytoplasm
CTD Direct Evidence: marker/mechanism		 RGD
CTD		 PMID:6337293 PMID:18424824 RGD:2289734 NCBI chrNW_004936619:3,847,059...3,883,866
Ensembl chrNW_004936619:3,876,299...3,882,747 		JBrowse link
G Coro1a coronin 1A ISO CTD Direct Evidence: marker/mechanism CTD PMID:21489049 NCBI chrNW_004936501:12,338,542...12,344,236
Ensembl chrNW_004936501:12,338,542...12,344,265 		JBrowse link
G Csn3 casein kappa ISO CTD Direct Evidence: marker/mechanism CTD PMID:16316942 NCBI chrNW_004936598:4,404,810...4,408,556 JBrowse link
G Dbi diazepam binding inhibitor, acyl-CoA binding protein ISO CTD Direct Evidence: marker/mechanism CTD PMID:12376462 NCBI chrNW_004936469:50,981,198...50,986,224
Ensembl chrNW_004936469:50,980,595...50,986,506 		JBrowse link
G Des desmin ISO CTD Direct Evidence: marker/mechanism CTD PMID:12376462 NCBI chrNW_004936569:1,807,902...1,814,936
Ensembl chrNW_004936569:1,807,805...1,815,562 		JBrowse link
G Dusp6 dual specificity phosphatase 6 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16316942 NCBI chrNW_004936507:6,309,114...6,314,512
Ensembl chrNW_004936507:6,308,886...6,313,935 		JBrowse link
G Eef1a1 eukaryotic translation elongation factor 1 alpha 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:12376462 NCBI chrNW_004936859:740,620...744,534
Ensembl chrNW_004936859:740,615...744,262 		JBrowse link
G Efemp1 EGF containing fibulin extracellular matrix protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:12376462 NCBI chrNW_004936491:2,159,654...2,214,480
Ensembl chrNW_004936491:2,159,096...2,214,677 		JBrowse link
G Egfr epidermal growth factor receptor ISO CTD Direct Evidence: marker/mechanism CTD PMID:8603490 NCBI chrNW_004936678:365,005...560,546
Ensembl chrNW_004936678:365,834...436,528 		JBrowse link
G Eif5a eukaryotic translation initiation factor 5A ISO CTD Direct Evidence: marker/mechanism CTD PMID:16316942 NCBI chrNW_004936595:604,268...609,075 JBrowse link
G Eno1 enolase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:12376462 NCBI chrNW_004936623:3,115,357...3,130,289
Ensembl chrNW_004936623:3,115,081...3,128,183 		JBrowse link
G Epcam epithelial cell adhesion molecule ISO CTD Direct Evidence: marker/mechanism CTD PMID:16316942 NCBI chrNW_004936508:5,019,513...5,032,610
Ensembl chrNW_004936508:5,019,918...5,032,414 		JBrowse link
G Ephx1 epoxide hydrolase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:12376462 NCBI chrNW_004936526:2,589,254...2,652,831
Ensembl chrNW_004936526:2,614,059...2,653,286 		JBrowse link
G Erbb2 erb-b2 receptor tyrosine kinase 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:8603490 NCBI chrNW_004936490:14,887,062...14,910,038
Ensembl chrNW_004936490:14,887,043...14,909,956 		JBrowse link
G Esr1 estrogen receptor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15637090 PMID:17173897 PMID:34606849 NCBI chrNW_004936489:4,616,839...4,887,179
Ensembl chrNW_004936489:4,614,754...4,887,171 		JBrowse link
G Esr2 estrogen receptor 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15637090 NCBI chrNW_004936495:7,956,168...8,018,356
Ensembl chrNW_004936495:7,956,766...8,004,357 		JBrowse link
G Ezr ezrin ISO CTD Direct Evidence: marker/mechanism CTD PMID:12376462 NCBI chrNW_004936489:10,413,374...10,457,771
Ensembl chrNW_004936489:10,412,710...10,458,201 		JBrowse link
G F11r F11 receptor ISO RGD PMID:21695058 RGD:7488916 NCBI chrNW_004936903:317,975...338,892
Ensembl chrNW_004936903:315,716...338,932 		JBrowse link
G Fabp4 fatty acid binding protein 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16316942 NCBI chrNW_004936656:2,722,970...2,727,383
Ensembl chrNW_004936656:2,722,713...2,729,046 		JBrowse link
G Fn1 fibronectin 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:12376462 NCBI chrNW_004936586:1,708,803...1,773,372
Ensembl chrNW_004936586:1,708,684...1,773,383 		JBrowse link
G Furin furin, paired basic amino acid cleaving enzyme ISO CTD Direct Evidence: marker/mechanism CTD PMID:12376462 PMID:16316942 NCBI chrNW_004936483:16,136,099...16,147,945
Ensembl chrNW_004936483:16,136,099...16,144,635 		JBrowse link
G G0s2 G0/G1 switch 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16316942 NCBI chrNW_004936557:3,428,157...3,429,176
Ensembl chrNW_004936557:3,426,525...3,429,479 		JBrowse link
G Gata3 GATA binding protein 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16316942 NCBI chrNW_004936484:6,780,692...6,800,883
Ensembl chrNW_004936484:6,780,692...6,800,966 		JBrowse link
G Gatm glycine amidinotransferase ISO CTD Direct Evidence: marker/mechanism CTD PMID:16316942 NCBI chrNW_004936471:8,017,611...8,032,703
Ensembl chrNW_004936471:8,017,603...8,032,703 		JBrowse link
G Gda guanine deaminase ISO CTD Direct Evidence: marker/mechanism CTD PMID:12376462 NCBI chrNW_004936503:8,191,925...8,279,806
Ensembl chrNW_004936503:8,192,049...8,278,790 		JBrowse link
G Ggt1 gamma-glutamyltransferase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:12376462 NCBI chrNW_004936619:762,278...791,610 JBrowse link
G Gnai2 G protein subunit alpha i2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16316942 NCBI chrNW_004936529:1,779,582...1,801,251
Ensembl chrNW_004936529:1,779,571...1,801,255 		JBrowse link
G Gss glutathione synthetase ISO CTD Direct Evidence: marker/mechanism CTD PMID:12376462 NCBI chrNW_004936561:5,765,637...5,793,951
Ensembl chrNW_004936561:5,765,610...5,793,567 		JBrowse link
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16316942 NCBI chrNW_004936512:11,481,017...11,487,737 JBrowse link
G Hras HRas proto-oncogene, GTPase ISO CTD Direct Evidence: marker/mechanism CTD PMID:8185828 NCBI chrNW_004936888:375,372...378,125
Ensembl chrNW_004936888:375,377...377,958 		JBrowse link
G Id3 inhibitor of DNA binding 3, HLH protein ISO CTD Direct Evidence: marker/mechanism CTD PMID:12376462 NCBI chrNW_004936474:8,758,098...8,759,684
Ensembl chrNW_004936474:8,758,030...8,759,823 		JBrowse link
G Igf2 insulin like growth factor 2 ISO mRNA:increased expression:mammary gland RGD PMID:18421211 RGD:2292665 NCBI chrNW_004936816:972,902...981,232
Ensembl chrNW_004936816:972,282...979,167 		JBrowse link
G Il6st interleukin 6 cytokine family signal transducer ISO CTD Direct Evidence: marker/mechanism CTD PMID:12606953 NCBI chrNW_004936480:11,867,573...11,913,563
Ensembl chrNW_004936480:11,884,582...11,909,635 		JBrowse link
G Insig1 insulin induced gene 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:12376462 NCBI chrNW_004936527:9,684,304...9,696,951
Ensembl chrNW_004936527:9,685,695...9,692,830 		JBrowse link
G Kdr kinase insert domain receptor ISO RGD PMID:19888452 RGD:5684399 NCBI chrNW_004936482:17,537,697...17,581,320
Ensembl chrNW_004936482:17,538,864...17,581,002 		JBrowse link
G Kitlg KIT ligand ISO CTD Direct Evidence: marker/mechanism CTD PMID:16316942 NCBI chrNW_004936507:5,566,144...5,650,412
Ensembl chrNW_004936507:5,565,821...5,650,828 		JBrowse link
G Kng1 kininogen 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22248470 NCBI chrNW_004936578:3,255,335...3,281,296
Ensembl chrNW_004936578:3,253,749...3,281,296 		JBrowse link
G Krt5 keratin 5 ISO CTD Direct Evidence: marker/mechanism CTD PMID:12376462 NCBI chrNW_004936512:9,923,593...9,929,517
Ensembl chrNW_004936512:9,922,523...9,929,517 		JBrowse link
G Lgals7 galectin 7 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16316942 NCBI chrNW_004936801:1,426,920...1,428,976 JBrowse link
G Lin7a lin-7 homolog A, crumbs cell polarity complex component ISO CTD Direct Evidence: marker/mechanism CTD PMID:12376462 NCBI chrNW_004936698:1,675,329...1,810,845
Ensembl chrNW_004936698:1,686,929...1,810,380 		JBrowse link
G LOC101959548 beta-casein ISO CTD Direct Evidence: marker/mechanism CTD PMID:9879772 PMID:16316942 NCBI chrNW_004936598:4,683,300...4,687,605 JBrowse link
G LOC101963257 histone H3.3A ISO CTD Direct Evidence: marker/mechanism CTD PMID:16316942 NCBI chrNW_004936594:959,493...961,703
Ensembl chrNW_004936594:958,049...961,708 		JBrowse link
G LOC101970831 serotransferrin ISO CTD Direct Evidence: marker/mechanism CTD PMID:9879772 PMID:16316942 NCBI chrNW_004936529:6,917,762...6,947,512
Ensembl chrNW_004936529:6,855,958...6,947,394 		JBrowse link
G Lpl lipoprotein lipase ISO CTD Direct Evidence: marker/mechanism CTD PMID:12376462 NCBI chrNW_004936555:4,084,099...4,108,219
Ensembl chrNW_004936555:4,084,099...4,108,365 		JBrowse link
G Lsr lipolysis stimulated lipoprotein receptor ISO CTD Direct Evidence: marker/mechanism CTD PMID:12376462 PMID:16316942 NCBI chrNW_004936570:1,023,967...1,038,223
Ensembl chrNW_004936570:1,023,960...1,038,587 		JBrowse link
G Mdh2 malate dehydrogenase 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:12376462 NCBI chrNW_004936543:2,194,074...2,208,626
Ensembl chrNW_004936543:2,194,032...2,208,651 		JBrowse link
G Mgp matrix Gla protein ISO CTD Direct Evidence: marker/mechanism CTD PMID:12376462 PMID:16316942 NCBI chrNW_004936587:2,601,419...2,605,848
Ensembl chrNW_004936587:2,601,312...2,605,870 		JBrowse link
G Mif macrophage migration inhibitory factor ISO CTD Direct Evidence: marker/mechanism CTD PMID:12376462 NCBI chrNW_004936619:1,207,058...1,208,010
Ensembl chrNW_004936619:1,203,746...1,208,442 		JBrowse link
G Mmp9 matrix metallopeptidase 9 treatment ISO RGD PMID:23714264 RGD:8547831 NCBI chrNW_004936514:7,038,240...7,045,873
Ensembl chrNW_004936514:7,037,639...7,045,793 		JBrowse link
G Mpzl1 myelin protein zero like 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16316942 NCBI chrNW_004936481:18,340,269...18,358,729
Ensembl chrNW_004936481:18,338,708...18,356,229 		JBrowse link
G Mrc2 mannose receptor C type 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16316942 NCBI chrNW_004936541:3,461,985...3,487,536
Ensembl chrNW_004936541:3,421,257...3,487,562 		JBrowse link
G Ndn necdin, MAGE family member ISO CTD Direct Evidence: marker/mechanism CTD PMID:21489049 NCBI chrNW_004936805:849,218...850,894
Ensembl chrNW_004936805:849,345...850,322 		JBrowse link
G Notch4 notch receptor 4 ISO DNA, mRNA:mutation, alternative form RGD PMID:8030284 RGD:2299155 NCBI chrNW_004936727:1,386,842...1,409,823 JBrowse link
G Nsmf NMDA receptor synaptonuclear signaling and neuronal migration factor ISO CTD Direct Evidence: marker/mechanism CTD PMID:12376462 NCBI chrNW_004936669:606,392...614,748
Ensembl chrNW_004936669:606,299...615,834 		JBrowse link
G Ntrk3 neurotrophic receptor tyrosine kinase 3 ameliorates ISO RGD PMID:20802235 RGD:150520014 NCBI chrNW_004936483:13,912,904...14,291,881
Ensembl chrNW_004936483:13,909,109...14,291,887 		JBrowse link
G Padi4 peptidyl arginine deiminase 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:12376462 NCBI chrNW_004936474:4,219,183...4,239,551
Ensembl chrNW_004936474:4,221,672...4,238,599 		JBrowse link
G Pdgfa platelet derived growth factor subunit A ISO CTD Direct Evidence: marker/mechanism CTD PMID:12376462 PMID:16316942 NCBI chrNW_004936754:808,894...828,554
Ensembl chrNW_004936754:808,213...828,613 		JBrowse link
G Pebp1 phosphatidylethanolamine binding protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:12376462 NCBI chrNW_004936668:2,316,661...2,323,015 JBrowse link
G Pgam1 phosphoglycerate mutase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16316942 NCBI chrNW_004936636:2,240,452...2,248,689
Ensembl chrNW_004936636:2,236,508...2,248,768 		JBrowse link
G Pgr progesterone receptor ISO CTD Direct Evidence: marker/mechanism CTD PMID:15637090 NCBI chrNW_004936551:6,498,553...6,573,212
Ensembl chrNW_004936551:6,498,553...6,573,222 		JBrowse link
G Phb1 prohibitin 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:12376462 NCBI chrNW_004936490:12,127,065...12,138,870 JBrowse link
G Pik3r1 phosphoinositide-3-kinase regulatory subunit 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:12606953 NCBI chrNW_004936480:1,188,408...1,273,210
Ensembl chrNW_004936480:1,188,183...1,273,537 		JBrowse link
G Pkm pyruvate kinase M1/2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16316942 NCBI chrNW_004936471:31,589,322...31,617,891
Ensembl chrNW_004936471:31,589,324...31,617,873 		JBrowse link
G Plk2 polo like kinase 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:12376462 NCBI chrNW_004936480:9,680,461...9,686,593
Ensembl chrNW_004936480:9,680,449...9,686,595 		JBrowse link
G Ppara peroxisome proliferator activated receptor alpha ISO CTD Direct Evidence: marker/mechanism CTD PMID:11137312 NCBI chrNW_004936629:3,672,445...3,725,645
Ensembl chrNW_004936629:3,672,460...3,725,626 		JBrowse link
G Prdx2 peroxiredoxin 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16316942 NCBI chrNW_004936659:1,894,423...1,897,690 JBrowse link
G Prl prolactin ISO CTD Direct Evidence: marker/mechanism CTD PMID:6280079 PMID:16316942 NCBI chrNW_004936552:7,204,298...7,212,632 JBrowse link
G Prlr prolactin receptor ISO CTD Direct Evidence: marker/mechanism CTD PMID:16316942 PMID:17173897 NCBI chrNW_004936518:6,352,133...6,495,242
Ensembl chrNW_004936518:6,473,536...6,487,757 		JBrowse link
G Psma4 proteasome 20S subunit alpha 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16316942 NCBI chrNW_004936471:36,508,045...36,516,033
Ensembl chrNW_004936471:36,508,017...36,516,062 		JBrowse link
G Psme1 proteasome activator subunit 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16316942 NCBI chrNW_004936722:405,491...408,277
Ensembl chrNW_004936722:403,112...408,473 		JBrowse link
G Ptbp1 polypyrimidine tract binding protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:12376462 NCBI chrNW_004936588:316,348...326,895
Ensembl chrNW_004936588:316,167...327,044 		JBrowse link
G Ptger1 prostaglandin E receptor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:11751431 NCBI chrNW_004936659:3,014,633...3,018,617
Ensembl chrNW_004936659:3,012,012...3,018,275 		JBrowse link
G Ptn pleiotrophin ISO CTD Direct Evidence: marker/mechanism CTD PMID:16316942 NCBI chrNW_004936592:1,706,979...1,806,345
Ensembl chrNW_004936592:1,707,693...1,730,617 		JBrowse link
G Ran RAN, member RAS oncogene family ISO CTD Direct Evidence: marker/mechanism CTD PMID:12376462 PMID:16316942 NCBI chrNW_004936660:1,669,352...1,673,972 JBrowse link
G Rasa1 RAS p21 protein activator 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:12606953 NCBI chrNW_004936469:5,839,560...5,933,049
Ensembl chrNW_004936469:5,839,743...5,932,021 		JBrowse link
G Rasgrf2 Ras protein specific guanine nucleotide releasing factor 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:12606953 NCBI chrNW_004936469:337,340...573,763
Ensembl chrNW_004936469:337,130...573,776 		JBrowse link
G Rassf1 Ras association domain family member 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20008439 NCBI chrNW_004936529:1,857,177...1,866,198
Ensembl chrNW_004936529:1,857,145...1,867,260 		JBrowse link
G Rb1 RB transcriptional corepressor 1 ISO CTD Direct Evidence: marker/mechanism RGD
CTD		 PMID:14522882 PMID:21364977 RGD:8547983 NCBI chrNW_004936565:1,596,227...1,746,706
Ensembl chrNW_004936565:1,597,593...1,746,846 		JBrowse link
G Rbp1 retinol binding protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:12376462 NCBI chrNW_004936540:1,600,673...1,626,573
Ensembl chrNW_004936540:1,600,398...1,626,652 		JBrowse link
G Rbp4 retinol binding protein 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16316942 NCBI chrNW_004936601:1,401,215...1,410,195
Ensembl chrNW_004936601:1,402,691...1,410,208 		JBrowse link
G Rcn1 reticulocalbin 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16316942 NCBI chrNW_004936533:5,685,053...5,693,518 JBrowse link
G Rel REL proto-oncogene, NF-kB subunit ISO DNA:transgene:mammary gland:mouse c-Rel cDNA driven by the MMTV-LTR promoter RGD PMID:12897145 RGD:2300264 NCBI chrNW_004936491:6,405,493...6,435,096
Ensembl chrNW_004936491:6,405,515...6,436,510 		JBrowse link
G Relb RELB proto-oncogene, NF-kB subunit ISO RGD PMID:12897145 RGD:2300264 NCBI chrNW_004936706:1,569,603...1,596,831
Ensembl chrNW_004936706:1,569,756...1,596,456 		JBrowse link
G Rpl3 ribosomal protein L3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16316942 NCBI chrNW_004936492:2,299,067...2,305,139
Ensembl chrNW_004936492:2,299,992...2,305,089 		JBrowse link
G Rpl6 ribosomal protein L6 ISO CTD Direct Evidence: marker/mechanism CTD PMID:12376462 NCBI chrNW_004936668:2,584,829...2,588,236
Ensembl chrNW_004936668:2,583,958...2,587,397 		JBrowse link
G Rps14 ribosomal protein S14 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16316942 NCBI chrNW_004936504:4,495,930...4,500,843
Ensembl chrNW_004936504:4,495,693...4,502,695 		JBrowse link
G S100a6 S100 calcium binding protein A6 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16316942 NCBI chrNW_004936580:3,347,185...3,347,878
Ensembl chrNW_004936580:3,347,152...3,348,105 		JBrowse link
G S100a8 S100 calcium binding protein A8 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22248470 NCBI chrNW_004936580:3,256,399...3,256,913
Ensembl chrNW_004936580:3,256,417...3,256,913 		JBrowse link
G S1pr1 sphingosine-1-phosphate receptor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:12376462 NCBI chrNW_004936748:1,244,962...1,250,093
Ensembl chrNW_004936748:1,245,538...1,250,093 		JBrowse link
G Scarb1 scavenger receptor class B member 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:12376462 NCBI chrNW_004936558:530,828...555,098
Ensembl chrNW_004936558:530,828...552,892 		JBrowse link
G Selenop selenoprotein P ISO CTD Direct Evidence: marker/mechanism CTD PMID:12376462 PMID:16316942 NCBI chrNW_004936518:155,905...166,932 JBrowse link
G Sgk1 serum/glucocorticoid regulated kinase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16316942 NCBI chrNW_004936560:1,979,804...2,009,167
Ensembl chrNW_004936560:1,979,808...2,088,329 		JBrowse link
G Slc12a2 solute carrier family 12 member 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:12376462 NCBI chrNW_004936504:1,378,812...1,465,463
Ensembl chrNW_004936504:1,378,810...1,465,623 		JBrowse link
G Slc25a10 solute carrier family 25 member 10 ISO CTD Direct Evidence: marker/mechanism CTD PMID:12376462 NCBI chrNW_004936594:5,308,623...5,314,955
Ensembl chrNW_004936594:5,308,464...5,317,239 		JBrowse link
G Sncg synuclein gamma ISO CTD Direct Evidence: marker/mechanism CTD PMID:16316942 NCBI chrNW_004936804:16,869...21,684
Ensembl chrNW_004936804:16,614...21,969 		JBrowse link
G Snrpd3 small nuclear ribonucleoprotein D3 polypeptide ISO CTD Direct Evidence: marker/mechanism CTD PMID:16316942 NCBI chrNW_004936619:728,759...744,367
Ensembl chrNW_004936619:728,114...745,551 		JBrowse link
G Sod1 superoxide dismutase 1 ISO protein:decreased expression:mammary gland (rat) RGD PMID:17157473 RGD:8657018 NCBI chrNW_004936500:10,345,154...10,352,873
Ensembl chrNW_004936500:10,345,154...10,352,867 		JBrowse link
G Sox9 SRY-box transcription factor 9 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16316942 NCBI chrNW_004936655:1,849,044...1,852,648
Ensembl chrNW_004936655:1,847,272...1,852,705 		JBrowse link
G Spint2 serine peptidase inhibitor, Kunitz type 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16316942 NCBI chrNW_004936801:1,041,946...1,069,617
Ensembl chrNW_004936801:1,041,708...1,069,776 		JBrowse link
G Srsf2 serine and arginine rich splicing factor 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16316942 NCBI chrNW_004936594:1,775,412...1,778,389 JBrowse link
G Stat3 signal transducer and activator of transcription 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16316942 NCBI chrNW_004936490:17,119,189...17,178,402
Ensembl chrNW_004936490:17,117,290...17,178,402 		JBrowse link
G Stmn1 stathmin 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:12376462 NCBI chrNW_004936474:10,470,006...10,475,557
Ensembl chrNW_004936474:10,468,728...10,475,594 		JBrowse link
G Tgfa transforming growth factor alpha ISO CTD Direct Evidence: marker/mechanism CTD PMID:8603490 NCBI chrNW_004936491:14,659,089...14,758,614
Ensembl chrNW_004936491:14,657,100...14,758,848 		JBrowse link
G Thrsp thyroid hormone responsive ISO CTD Direct Evidence: marker/mechanism CTD PMID:16316942 NCBI chrNW_004936498:6,622,007...6,624,961
Ensembl chrNW_004936498:6,622,004...6,624,961 		JBrowse link
G Tkt transketolase ISO CTD Direct Evidence: marker/mechanism CTD PMID:12376462 NCBI chrNW_004936473:3,950,846...3,978,778
Ensembl chrNW_004936473:3,950,920...3,978,672 		JBrowse link
G Tle4 TLE family member 4, transcriptional corepressor ISO CTD Direct Evidence: marker/mechanism CTD PMID:12376462 NCBI chrNW_004936632:3,077,594...3,213,763
Ensembl chrNW_004936632:3,077,563...3,213,763 		JBrowse link
G Tmem37 transmembrane protein 37 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21489049 NCBI chrNW_004936469:50,917,760...50,924,025
Ensembl chrNW_004936469:50,918,209...50,924,073 		JBrowse link
G Tp53i3 tumor protein p53 inducible protein 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21489049 NCBI chrNW_004936493:7,897,757...7,906,106
Ensembl chrNW_004936493:7,898,962...7,905,935 		JBrowse link
G Tpm3 tropomyosin 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:12376462 PMID:16316942 NCBI chrNW_004936580:3,860,185...3,893,251
Ensembl chrNW_004936580:3,860,190...3,889,978 		JBrowse link
G Trps1 transcriptional repressor GATA binding 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16316942 NCBI chrNW_004936470:30,475,779...30,666,546
Ensembl chrNW_004936470:30,432,625...30,665,091 		JBrowse link
G Tsc22d1 TSC22 domain family member 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16316942 NCBI chrNW_004936791:697,244...811,463
Ensembl chrNW_004936791:694,954...811,469 		JBrowse link
G Ube2i ubiquitin conjugating enzyme E2 I ISO CTD Direct Evidence: marker/mechanism CTD PMID:16316942 NCBI chrNW_004936694:2,561,701...2,571,284
Ensembl chrNW_004936694:2,561,681...2,576,647 		JBrowse link
G Ucp2 uncoupling protein 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16316942 NCBI chrNW_004936498:3,059,700...3,066,112
Ensembl chrNW_004936498:3,059,297...3,066,197 		JBrowse link
G Vamp8 vesicle associated membrane protein 8 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16316942 NCBI chrNW_004936712:1,688,126...1,689,742
Ensembl chrNW_004936712:1,688,093...1,689,816 		JBrowse link
G Wnt1 Wnt family member 1 ISO mRNA:increased expression:tumors:insertion of MMTV into Wnt1 gene increases expression and decreases latency of tumorigenesis in WAP-TGFalpha mice RGD PMID:10918574 RGD:2298804 NCBI chrNW_004936512:6,781,001...6,785,358
Ensembl chrNW_004936512:6,780,882...6,785,358 		JBrowse link
G Wnt6 Wnt family member 6 ISO Adenomyoepithelioma; mRNA:increased expression:tumor:PLAG-1 transgenic mice RGD PMID:18649356 RGD:2298845 NCBI chrNW_004936569:1,290,061...1,302,672
Ensembl chrNW_004936569:1,290,052...1,302,691 		JBrowse link
G Xdh xanthine dehydrogenase ISO CTD Direct Evidence: marker/mechanism CTD PMID:12376462 NCBI chrNW_004936493:1,762,814...1,824,501
Ensembl chrNW_004936493:1,762,869...1,823,238 		JBrowse link
G Ywhaz tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta ISO CTD Direct Evidence: marker/mechanism CTD PMID:12376462 NCBI chrNW_004936470:42,444,671...42,470,548
Ensembl chrNW_004936470:42,445,412...42,470,900 		JBrowse link
Aplasia or Hypoplasia of Breasts and/or Nipples 2 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ptprf protein tyrosine phosphatase receptor type F ISO ClinVar Annotator: match by term: Breasts and/or nipples, aplasia or hypoplasia of, 2 OMIM
ClinVar		 NCBI chrNW_004936474:24,908,103...24,984,678
Ensembl chrNW_004936474:24,908,120...24,983,330 		JBrowse link
aromatase excess syndrome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ar androgen receptor ISO ClinVar Annotator: match by term: Gynecomastia, familial ClinVar PMID:16804045 PMID:28492532 NCBI chrNW_004936635:485,903...647,820
Ensembl chrNW_004936635:485,903...647,932 		JBrowse link
G LOC101954950 aromatase ISO ClinVar Annotator: match by term: Aromatase deficiency | ClinVar Annotator: match by term: Aromatase excess syndrome OMIM
ClinVar		 PMID:1496995 PMID:1825497 PMID:2973313 PMID:8265607 PMID:8530621 More... NCBI chrNW_004936471:13,107,603...13,136,910
Ensembl chrNW_004936471:13,107,603...13,136,910 		JBrowse link
asbestos-related lung carcinoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adam28 ADAM metallopeptidase domain 28 ISO associated with lung adenocarcinoma ;mRNA:increased expression:lung RGD PMID:20544843 RGD:153298907 NCBI chrNW_004936555:7,615,639...7,660,776
Ensembl chrNW_004936555:7,617,822...7,664,215 		JBrowse link
G Kif5a kinesin family member 5A susceptibility ISO protein:increased expression:serum (human) RGD PMID:21231887 RGD:12793066 NCBI chrNW_004936646:1,697,531...1,730,376
Ensembl chrNW_004936646:1,697,492...1,732,832 		JBrowse link
G Rarb retinoic acid receptor beta ISO DNA:hypomethylation:lung RGD PMID:28722770 RGD:13503322 NCBI chrNW_004936473:16,983,829...17,146,517
Ensembl chrNW_004936473:16,983,600...17,148,885 		JBrowse link
bilateral breast cancer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atm ATM serine/threonine kinase ISO ClinVar Annotator: match by term: Bilateral breast carcinoma ClinVar PMID:19781682 PMID:25741868 PMID:26689913 PMID:26787654 PMID:28492532 More... NCBI chrNW_004936551:359,134...534,672
Ensembl chrNW_004936551:359,362...532,211 		JBrowse link
G Brca1 BRCA1 DNA repair associated ISO ClinVar Annotator: match by term: bilateral breast cancer ClinVar PMID:9150151 PMID:11376024 PMID:16683254 PMID:19491284 PMID:20104584 More... NCBI chrNW_004936490:17,735,444...17,801,456 JBrowse link
G Brca2 BRCA2 DNA repair associated ISO ClinVar Annotator: match by term: bilateral breast cancer ClinVar NCBI chrNW_004936472:26,945,659...27,017,693 JBrowse link
G Mc1r melanocortin 1 receptor ISO ClinVar Annotator: match by term: bilateral breast cancer ClinVar PMID:16809487 PMID:16982779 PMID:24335900 PMID:24982914 PMID:25741868 More... NCBI chrNW_004936641:193,885...198,730 JBrowse link
G Msh6 mutS homolog 6 ISO ClinVar Annotator: match by term: bilateral breast cancer ClinVar PMID:23047549 PMID:23621914 PMID:25741868 PMID:26467025 PMID:26689913 More... NCBI chrNW_004936508:4,708,661...4,728,671
Ensembl chrNW_004936508:4,708,661...4,728,787 		JBrowse link
G Palb2 partner and localizer of BRCA2 ISO ClinVar Annotator: match by term: bilateral breast cancer ClinVar PMID:20852946 PMID:22692731 PMID:24448499 PMID:24556926 PMID:25186627 More... NCBI chrNW_004936501:8,246,927...8,273,258 JBrowse link
G Sdhb succinate dehydrogenase complex iron sulfur subunit B ISO ClinVar Annotator: match by term: bilateral breast cancer ClinVar PMID:17102082 PMID:19351833 PMID:20208144 PMID:21520333 PMID:23175444 More... NCBI chrNW_004936474:3,993,224...4,021,359
Ensembl chrNW_004936474:3,990,778...4,021,423 		JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 ISO ClinVar Annotator: match by term: bilateral breast cancer ClinVar PMID:28492532 NCBI chrNW_004936659:1,152,846...1,246,718
Ensembl chrNW_004936659:1,169,792...1,249,213 		JBrowse link
breast adenocarcinoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akt1 AKT serine/threonine kinase 1 ISO ClinVar Annotator: match by term: Breast adenocarcinoma, somatic ClinVar PMID:17611497 PMID:18256540 PMID:18392055 PMID:18504432 PMID:18611285 More... NCBI chrNW_004936621:620,163...639,115
Ensembl chrNW_004936621:620,074...639,093 		JBrowse link
G Brca1 BRCA1 DNA repair associated treatment ISO RGD PMID:8589721 RGD:126925966 NCBI chrNW_004936490:17,735,444...17,801,456 JBrowse link
G Cat catalase ISO RGD PMID:25050522 RGD:9226881 NCBI chrNW_004936533:3,601,270...3,637,128
Ensembl chrNW_004936533:3,600,955...3,637,422 		JBrowse link
G Ccne1 cyclin E1 ISO DNA:amplification RGD PMID:18089785 RGD:2289225 NCBI chrNW_004936570:5,536,817...5,547,880
Ensembl chrNW_004936570:5,536,672...5,548,008 		JBrowse link
G Ccng1 cyclin G1 ISO mRNA, protein:altered expression:mammary (mouse) RGD PMID:11146550 RGD:2315939 NCBI chrNW_004936515:614,287...621,213
Ensembl chrNW_004936515:614,290...619,963 		JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 no_association ISO DNA:mutation:exons:no mutations found in mutation hotspots in exons 7, 10 or 15 RGD PMID:11466624 RGD:2289868 NCBI chrNW_004936477:21,591,772...21,606,289
Ensembl chrNW_004936477:21,591,792...21,606,296 		JBrowse link
G Kras KRAS proto-oncogene, GTPase ISO ClinVar Annotator: match by term: Breast adenocarcinoma, somatic ClinVar PMID:2278970 PMID:2547513 PMID:3122217 PMID:3627975 PMID:12460918 More... NCBI chrNW_004936548:2,078,568...2,113,877
Ensembl chrNW_004936548:2,079,036...2,110,523 		JBrowse link
G Ksr1 kinase suppressor of ras 1 severity ISO RGD PMID:24909178 RGD:127229932 NCBI chrNW_004936538:3,945,411...4,006,300
Ensembl chrNW_004936538:3,863,771...4,011,649 		JBrowse link
G LOC101970101 cytochrome P450 1B1 ISO mRNA:increased expression:mammary epithelium (rat) RGD PMID:11097088 RGD:7829735 NCBI chrNW_004936663:345,021...355,188
Ensembl chrNW_004936663:348,368...355,191 		JBrowse link
G Muc1 mucin 1, cell surface associated ISO mRNA,protein:increased expression:breast RGD PMID:7678777 RGD:2324855 NCBI chrNW_004936580:4,691,870...4,694,092 JBrowse link
G Mxi1 MAX interactor 1, dimerization protein ISO RGD PMID:10849326 RGD:1298988 NCBI chrNW_004936486:1,103,908...1,173,982
Ensembl chrNW_004936486:1,101,552...1,177,220 		JBrowse link
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha ISO ClinVar Annotator: match by term: Breast adenocarcinoma, somatic ClinVar PMID:15016963 PMID:15254419 PMID:15520168 PMID:15608678 PMID:15647370 More... NCBI chrNW_004936566:3,924,013...3,951,052
Ensembl chrNW_004936566:3,923,934...3,951,073 		JBrowse link
G Rb1cc1 RB1 inducible coiled-coil 1 ISO ClinVar Annotator: match by term: Breast adenocarcinoma ClinVar PMID:12068296 NCBI chrNW_004936590:260,685...335,143
Ensembl chrNW_004936590:260,685...334,721 		JBrowse link
G Slc22a18 solute carrier family 22 member 18 ISO ClinVar Annotator: match by term: Breast adenocarcinoma ClinVar PMID:9520460 NCBI chrNW_004936794:1,042,103...1,061,347
Ensembl chrNW_004936794:1,042,224...1,061,345 		JBrowse link
G Tnf tumor necrosis factor ISO human protein in a rat model RGD PMID:12536235 RGD:14995452 NCBI chrNW_004936727:1,936,066...1,937,766
Ensembl chrNW_004936727:1,936,066...1,937,766 		JBrowse link
G Tp53 tumor protein p53 ISO ClinVar Annotator: match by term: Breast adenocarcinoma, somatic ClinVar PMID:1673792 PMID:1686725 PMID:7881428 PMID:8364550 PMID:10713666 More... NCBI chrNW_004936595:919,807...935,367
Ensembl chrNW_004936595:919,428...925,425 		JBrowse link
breast angiosarcoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kdr kinase insert domain receptor ISO DNA:mutation:multiple (human) RGD PMID:32123305 RGD:151665102 NCBI chrNW_004936482:17,537,697...17,581,320
Ensembl chrNW_004936482:17,538,864...17,581,002 		JBrowse link
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha ISO DNA:mutation:multiple (human) RGD PMID:32123305 RGD:151665102 NCBI chrNW_004936566:3,924,013...3,951,052
Ensembl chrNW_004936566:3,923,934...3,951,073 		JBrowse link
G Ptprb protein tyrosine phosphatase receptor type B ISO DNA:mutation:multiple (human) RGD PMID:32123305 RGD:151665102 NCBI chrNW_004936545:8,150,766...8,235,674
Ensembl chrNW_004936545:8,147,291...8,235,715 		JBrowse link
breast cancer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acsl3 acyl-CoA synthetase long chain family member 3 disease_progression ISO mRNA:increased expression:breast
DNA:deletion		 RGD PMID:23512947 PMID:28977883 RGD:13831299 RGD:13831301 NCBI chrNW_004936569:4,774,602...4,842,906
Ensembl chrNW_004936569:4,774,542...4,844,494 		JBrowse link
G Adam28 ADAM metallopeptidase domain 28 exacerbates ISO RGD PMID:19549921 RGD:153298911 NCBI chrNW_004936555:7,615,639...7,660,776
Ensembl chrNW_004936555:7,617,822...7,664,215 		JBrowse link
G Adipoq adiponectin, C1Q and collagen domain containing no_association ISO DNA:SNPs: :rs1501299, rs2241766 (human)
protein:decreased expression:serum		 RGD PMID:16019138 PMID:17192291 PMID:18451143 PMID:19723917 RGD:8694415 RGD:8694417 RGD:8694425 RGD:8694447 NCBI chrNW_004936578:3,168,599...3,179,369
Ensembl chrNW_004936578:3,168,331...3,171,928 		JBrowse link
G Adipor1 adiponectin receptor 1 no_association ISO DNA:SNPs: :rs7539542 (human) RGD PMID:18451143 PMID:19723917 RGD:8694415 RGD:8694417 NCBI chrNW_004936567:1,658,405...1,674,794
Ensembl chrNW_004936567:1,658,383...1,676,199 		JBrowse link
G Adipor2 adiponectin receptor 2 no_association ISO RGD PMID:19723917 RGD:8694417 NCBI chrNW_004936606:1,911,104...2,007,109
Ensembl chrNW_004936606:1,948,743...2,007,163 		JBrowse link
G Adm adrenomedullin ISO RGD PMID:16841081 RGD:2325318 NCBI chrNW_004936528:8,005,223...8,007,586
Ensembl chrNW_004936528:8,005,189...8,007,643 		JBrowse link
G Adsl adenylosuccinate lyase severity ISO protein:increased activity:tumor (rat)
protein:increased activity:tumor (human)		 RGD PMID:2937404 PMID:3690833 RGD:1598760 RGD:1598766 NCBI chrNW_004936492:1,423,780...1,440,825 JBrowse link
G Agr2 anterior gradient 2, protein disulphide isomerase family member disease_progression ISO RGD PMID:16598187 RGD:2325661 NCBI chrNW_004936546:3,316,622...3,328,317
Ensembl chrNW_004936546:3,315,543...3,328,369 		JBrowse link
G Agt angiotensinogen susceptibility ISO protein:increased expression:serum
DNA:polymorphism: :p.M235T (human)
DNA:polymorphisms, haplotypes: :p.T174M, p.M235T (human) 		RGD PMID:16823505 PMID:23374911 PMID:23828384 RGD:8548861 RGD:8548866 RGD:8548901 NCBI chrNW_004936484:19,713,299...19,721,144
Ensembl chrNW_004936484:19,716,165...19,721,261 		JBrowse link
G Agtr1 angiotensin II receptor type 1 ISO DNA:polymorphism, haplotype: :1166A>C (human) RGD PMID:23828384 RGD:8548866 NCBI chrNW_004936519:6,831,096...6,873,977
Ensembl chrNW_004936519:6,831,096...6,873,985 		JBrowse link
G Aif1l allograft inflammatory factor 1 like severity ISO RGD PMID:30233209 RGD:13842475 NCBI chrNW_004936487:17,961,922...17,979,721
Ensembl chrNW_004936487:17,961,854...17,979,749 		JBrowse link
G Akr1a1 aldo-keto reductase family 1 member A1 ISO mRNA:increased expression:breast RGD PMID:25526449 RGD:27226689 NCBI chrNW_004936474:26,680,736...26,696,996
Ensembl chrNW_004936474:26,680,676...26,697,214 		JBrowse link
G Akt1 AKT serine/threonine kinase 1 ISO ClinVar Annotator: match by term: Breast cancer, somatic
ClinVar Annotator: match by term: Malignant tumor of breast		 OMIM
ClinVar		 PMID:17611497 PMID:18256540 PMID:18392055 PMID:18504432 PMID:18611285 More... NCBI chrNW_004936621:620,163...639,115
Ensembl chrNW_004936621:620,074...639,093 		JBrowse link
G Alox5ap arachidonate 5-lipoxygenase activating protein ISO DNA:polymorphism:g.-4800A>G (human) RGD PMID:18843019 RGD:2313902 NCBI chrNW_004936472:25,477,094...25,502,823
Ensembl chrNW_004936472:25,477,010...25,502,840 		JBrowse link
G Amh anti-Mullerian hormone onset ISO RGD PMID:19820206 RGD:2315637 NCBI chrNW_004936588:1,342,791...1,345,746
Ensembl chrNW_004936588:1,343,085...1,345,654 		JBrowse link
G Antxr1 ANTXR cell adhesion molecule 1 disease_progression ISO mRNA:increased expression:breast: RGD PMID:17016666 RGD:9684946 NCBI chrNW_004936491:13,288,986...13,516,878
Ensembl chrNW_004936491:13,288,717...13,516,984 		JBrowse link
G Anxa7 annexin A7 disease_progression ISO protein:increased expression:breast RGD PMID:15073110 RGD:2292655 NCBI chrNW_004936521:5,639,193...5,671,369
Ensembl chrNW_004936521:5,651,719...5,671,050 		JBrowse link
G Aopep aminopeptidase O (putative) ISO ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast		 ClinVar PMID:7689011 PMID:08128956 PMID:08844212 PMID:8882868 PMID:9521584 More... NCBI chrNW_004936626:3,704,474...3,973,913
Ensembl chrNW_004936626:3,667,123...3,970,433 		JBrowse link
G Apc APC regulator of WNT signaling pathway ISO ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:8940262 PMID:9288102 PMID:9585599 PMID:9724771 PMID:9731522 More... NCBI chrNW_004936531:6,899,580...7,019,016
Ensembl chrNW_004936531:6,899,788...7,019,453 		JBrowse link
G Apex1 apurinic/apyrimidinic endodeoxyribonuclease 1 susceptibility ISO DNA:polymorphism: :p.D148E (human) RGD PMID:18701435 RGD:2315661 NCBI chrNW_004936877:666,545...669,351
Ensembl chrNW_004936877:666,523...669,338 		JBrowse link
G Apoc3 apolipoprotein C3 disease_progression ISO RGD PMID:28715644 RGD:153350084 NCBI chrNW_004936542:2,106,927...2,108,412
Ensembl chrNW_004936542:2,106,318...2,108,603 		JBrowse link
G Apoe apolipoprotein E susceptibility
no_association		 ISO DNA:polymorphism:exon:
DNA:polymprphism:exon:		 RGD PMID:15830139 PMID:16752225 RGD:7495789 RGD:7771592 NCBI chrNW_004936706:1,512,438...1,516,805 JBrowse link
G Areg amphiregulin ISO RGD PMID:16438846 RGD:2292658 NCBI chrNW_004936598:1,276,599...1,283,612
Ensembl chrNW_004936598:1,274,565...1,283,746 		JBrowse link
G Arid1a AT-rich interaction domain 1A treatment ISO human cells in mouse model RGD PMID:26069190 RGD:11072938 NCBI chrNW_004936474:11,148,857...11,197,312 JBrowse link
G Asf1b anti-silencing function 1B histone chaperone disease_progression ISO RGD PMID:21179005 RGD:9586017 NCBI chrNW_004936659:2,772,310...2,782,687
Ensembl chrNW_004936659:2,770,900...2,782,748 		JBrowse link
G Atm ATM serine/threonine kinase susceptibility ISO ClinVar Annotator: match by term: Breast cancer, early-onset | ClinVar Annotator: match by term: Breast cancer, lobular | ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, early-onset | ClinVar Annotator: match by term: Breast cancer, somatic | ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, early-onset | ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast		 OMIM
ClinVar
RGD		 PMID:1160401 PMID:1739330 PMID:2166257 PMID:2677459 PMID:6504056 More... RGD:1643350 NCBI chrNW_004936551:359,134...534,672
Ensembl chrNW_004936551:359,362...532,211 		JBrowse link
G Atr ATR serine/threonine kinase ISO ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:28492532 NCBI chrNW_004936540:4,074,543...4,178,859
Ensembl chrNW_004936540:4,074,570...4,178,898 		JBrowse link
G Axin2 axin 2 ISO ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:21541676 PMID:25236910 PMID:26467025 PMID:28492532 PMID:29114927 More... NCBI chrNW_004936541:7,155,963...7,242,466
Ensembl chrNW_004936541:7,211,985...7,242,470 		JBrowse link
G Bad BCL2 associated agonist of cell death disease_progression ISO RGD PMID:17004114 RGD:2292674 NCBI chrNW_004936599:4,924,349...4,933,683
Ensembl chrNW_004936599:4,924,789...4,933,368 		JBrowse link
G Bag1 BAG cochaperone 1 disease_progression ISO protein:increased expression:breast RGD PMID:11181661 RGD:2293888 NCBI chrNW_004936524:1,793,001...1,804,145
Ensembl chrNW_004936524:1,791,119...1,804,151 		JBrowse link
G Bard1 BRCA1 associated RING domain 1 susceptibility
no_association
severity		 ISO ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
DNA:polymorphisms: :p.P24S, p.R378S (human)
DNA:polymorphisms: :multiple (human)
protein:increased expression, altered localization:breast
DNA:polymorphism: :p.V507M (human)
DNA:polymorphisms: :p.V507M, p.C557S (human)
DNA:polymorphism: :p.C557S (human)		 OMIM
ClinVar
RGD		 PMID:9425226 PMID:9536098 PMID:11807980 PMID:14550946 PMID:15342711 More... RGD:2315713 RGD:2315714 RGD:2315715 RGD:2315716 RGD:2315717 RGD:2315727 RGD:2315729 NCBI chrNW_004936586:2,200,211...2,272,781
Ensembl chrNW_004936586:2,200,205...2,273,307 		JBrowse link
G Bax BCL2 associated X, apoptosis regulator disease_progression ISO RGD PMID:17626754 RGD:1643353 NCBI chrNW_004936664:2,968,103...2,973,652
Ensembl chrNW_004936664:2,967,865...2,973,820 		JBrowse link
G Bcar1 BCAR1 scaffold protein, Cas family member severity ISO protein:increased expression:breast, cytosol (human) RGD PMID:15448007 RGD:8547748 NCBI chrNW_004936475:23,994,130...24,032,829
Ensembl chrNW_004936475:23,992,193...24,033,031 		JBrowse link
G Bcas2 BCAS2 pre-mRNA processing factor ISO DNA:amplification:cds (human) RGD PMID:12169396 RGD:9850147 NCBI chrNW_004936690:2,900,003...2,913,427
Ensembl chrNW_004936690:2,900,002...2,913,381 		JBrowse link
G Bcas3 BCAS3 microtubule associated cell migration factor ISO RGD PMID:16855396 RGD:2317828 NCBI chrNW_004936490:2,189,693...2,761,989
Ensembl chrNW_004936490:2,189,583...2,761,331 		JBrowse link
G Bcl2l1 BCL2 like 1 ISO RGD PMID:16850344 RGD:1643481 NCBI chrNW_004936485:18,654,046...18,707,324 JBrowse link
G Becn1 beclin 1 disease_progression ISO RGD PMID:33292020 RGD:155641236 NCBI chrNW_004936490:17,518,100...17,531,126
Ensembl chrNW_004936490:17,517,751...17,531,151 		JBrowse link
G Bik BCL2 interacting killer ISO RGD PMID:14633680 RGD:14394816
G Birc2 baculoviral IAP repeat containing 2 ISO RGD PMID:12218061 RGD:1643528 NCBI chrNW_004936551:5,515,904...5,535,864 JBrowse link
G Bmp4 bone morphogenetic protein 4 ISO mRNA:increased expression:breast RGD PMID:17004110 RGD:1643590 NCBI chrNW_004936697:1,054,237...1,061,468
Ensembl chrNW_004936697:1,056,636...1,061,468 		JBrowse link
G Bmp6 bone morphogenetic protein 6 ISO mRNA:decreased expression:breast RGD PMID:17004110 RGD:1643590 NCBI chrNW_004936534:4,707,658...4,871,865
Ensembl chrNW_004936534:4,709,064...4,871,023 		JBrowse link
G Bmp7 bone morphogenetic protein 7 ISO mRNA:increased expression:breast RGD PMID:17004110 RGD:1643590 NCBI chrNW_004936530:71,965...143,940
Ensembl chrNW_004936530:71,920...143,940 		JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A ISO ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:22703879 PMID:23399955 PMID:24033266 PMID:24448499 PMID:24728327 More... NCBI chrNW_004936804:52,435...115,289
Ensembl chrNW_004936804:48,947...115,412 		JBrowse link
G Brca1 BRCA1 DNA repair associated susceptibility ISO DNA:mutation
ClinVar Annotator: match by term: Breast cancer, somatic | ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, early-onset | ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
mRNA:allelic imbalance:lymphocyte		 RGD
ClinVar		 PMID:1157798 PMID:1673748 PMID:2504116 PMID:2505045 PMID:7493024 More... RGD:1599497 RGD:2293153 NCBI chrNW_004936490:17,735,444...17,801,456 JBrowse link
G Brca2 BRCA2 DNA repair associated ISO ClinVar Annotator: match by term: Breast cancer, somatic | ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, early-onset | ClinVar Annotator: match by term: Breast cancer, somatic | ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, early-onset | ClinVar Annotator: match by term: Breast cancer, invasive ductal | ClinVar Annotator: match by term: Breast cancer, somatic | ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, lobular | ClinVar Annotator: match by term: Breast cancer, somatic | ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast		 OMIM
ClinVar		 PMID:234495 PMID:1169856 PMID:3146935 PMID:3413277 PMID:6295337 More... NCBI chrNW_004936472:26,945,659...27,017,693 JBrowse link
G Brip1 BRCA1 interacting helicase 1 susceptibility
onset		 ISO ClinVar Annotator: match by term: Breast cancer, early-onset | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, somatic | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, early-onset | ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
DNA:mutations:multiple (human)
DNA:snps, haplotype:introns:c.1935+977T>C, c.1473+3729A>G, c.1340+109G>A (rs11871753, rs16945628, rs2191248) (human)
DNA:snp:3' utr:C>A (rs7220740) (human)
DNA:missense mutations:cds:p.P47A, p.M299I (human)		 OMIM
ClinVar
RGD		 PMID:2455662 PMID:9536098 PMID:11301010 PMID:12565990 PMID:12569564 More... RGD:11252100 RGD:11252107 RGD:11252109 RGD:1600525 NCBI chrNW_004936490:3,001,445...3,139,538
Ensembl chrNW_004936490:3,003,484...3,137,479 		JBrowse link
G Btg2 BTG anti-proliferation factor 2 ISO protein:decreased expression:breast, nucleus RGD PMID:16849553 RGD:2289068 NCBI chrNW_004936567:1,310,525...1,314,469
Ensembl chrNW_004936567:1,309,658...1,314,515 		JBrowse link
G Cacna1c calcium voltage-gated channel subunit alpha1 C ISO ClinVar Annotator: match by term: Breast cancer, invasive ductal ClinVar PMID:28492532 NCBI chrNW_004936606:2,168,104...2,867,560
Ensembl chrNW_004936606:2,168,625...2,865,758 		JBrowse link
G Casp3 caspase 3 severity ISO protein:decreased expression:breast RGD PMID:18227733 PMID:23979166 RGD:13209143 RGD:2293092 NCBI chrNW_004936554:4,571,072...4,593,765 JBrowse link
G Casp7 caspase 7 disease_progression ISO RGD PMID:23979166 RGD:13209143 NCBI chrNW_004936486:4,082,664...4,114,942
Ensembl chrNW_004936486:4,088,372...4,114,955 		JBrowse link
G Casp8 caspase 8 ISO ClinVar Annotator: match by term: Breast cancer, protection against OMIM
ClinVar		 PMID:15601643 PMID:15998955 PMID:17293864 PMID:24033266 PMID:28492532 NCBI chrNW_004936726:554,627...596,334
Ensembl chrNW_004936726:554,758...595,922 		JBrowse link
G Casp9 caspase 9 ISO mRNA:decreased expression:breast RGD PMID:17011986 RGD:2290492 NCBI chrNW_004936474:3,178,097...3,196,130 JBrowse link
G Casr calcium sensing receptor ISO ClinVar Annotator: match by term: Malignant breast neoplasm ClinVar PMID:8636323 PMID:10023897 PMID:10217111 PMID:10912749 PMID:11161843 More... NCBI chrNW_004936536:8,574,064...8,599,446
Ensembl chrNW_004936536:8,574,064...8,599,454 		JBrowse link
G Cav1 caveolin 1 disease_progression
no_association		 ISO OMIM:114480
DNA:SNPs: :14713G>A (rs3807987), 29107T>A (rs7804372) (human)
DNA:SNPs: :multiple
DNA, protein:hypermethylation, decreased expression:promoter, breast		 RGD
MouseDO		 PMID:15375584 PMID:21585620 PMID:21965771 RGD:2289105 RGD:8661766 RGD:8661769 NCBI chrNW_004936589:2,504,235...2,536,778
Ensembl chrNW_004936589:2,504,224...2,537,170 		JBrowse link
G Cbx7 chromobox 7 severity ISO human gene in a mouse model RGD PMID:25351982 RGD:11352704 NCBI chrNW_004936492:2,411,171...2,428,484
Ensembl chrNW_004936492:2,410,308...2,428,682 		JBrowse link
G Ccnb1 cyclin B1 disease_progression ISO RGD PMID:19223507 PMID:19957331 RGD:2315934 RGD:2315937 NCBI chrNW_004936480:400,287...407,677
Ensembl chrNW_004936480:399,224...407,704 		JBrowse link
G Ccnd2 cyclin D2 disease_progression ISO RGD PMID:30308939 RGD:151665105 NCBI chrNW_004936606:4,474,801...4,496,158
Ensembl chrNW_004936606:4,474,749...4,496,810 		JBrowse link
G Ccne1 cyclin E1 disease_progression ISO RGD PMID:17483245 RGD:2289231 NCBI chrNW_004936570:5,536,817...5,547,880
Ensembl chrNW_004936570:5,536,672...5,548,008 		JBrowse link
G Ccng1 cyclin G1 treatment ISO RGD PMID:23791885 RGD:151356928 NCBI chrNW_004936515:614,287...621,213
Ensembl chrNW_004936515:614,290...619,963 		JBrowse link
G Ccr6 C-C motif chemokine receptor 6 disease_progression ISO RGD PMID:21624121 RGD:7483628 NCBI chrNW_004936489:16,669,297...16,689,451
Ensembl chrNW_004936489:16,669,297...16,689,451 		JBrowse link
G Cd55 CD55 molecule (Cromer blood group) disease_progression ISO RGD PMID:15102687 PMID:18676748 RGD:2326166 RGD:2326170 NCBI chrNW_004936557:5,344,373...5,364,234 JBrowse link
G Cdc25c cell division cycle 25C ISO protein:increased expression:breast RGD PMID:15567944 RGD:4105448 NCBI chrNW_004936531:7,471,722...7,499,781
Ensembl chrNW_004936531:7,471,722...7,499,766 		JBrowse link
G Cdc73 cell division cycle 73 exacerbates ISO mRNA:increased expression:breast (human) RGD PMID:29221126 RGD:150539444 NCBI chrNW_004936638:1,365,457...1,482,497
Ensembl chrNW_004936638:1,365,648...1,483,277 		JBrowse link
G Cdh1 cadherin 1 ISO ClinVar Annotator: match by term: Breast cancer, lobular | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, lobular | ClinVar Annotator: match by term: Breast cancer, somatic | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, lobular | ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast		 OMIM
ClinVar		 PMID:2449335 PMID:8075649 PMID:8557030 PMID:9744472 PMID:11196175 More... NCBI chrNW_004936475:18,990,529...19,065,954
Ensembl chrNW_004936475:18,990,474...19,067,203 		JBrowse link
G Cdh13 cadherin 13 ISO protein:decreased expression:breast duct:
DNA:hypermethylation		 RGD PMID:8673923 PMID:17764565 RGD:2293542 RGD:734735 NCBI chrNW_004936641:3,925,185...4,223,421
Ensembl chrNW_004936641:3,931,033...4,224,101 		JBrowse link
G Cdk1 cyclin dependent kinase 1 disease_progression
susceptibility		 ISO DNA:SNP:intron:rs16941635 (human) RGD PMID:17956886 PMID:19377877 RGD:2683526 RGD:2708463 NCBI chrNW_004936614:2,300,682...2,313,611
Ensembl chrNW_004936614:2,300,513...2,313,624 		JBrowse link
G Cdk13 cyclin dependent kinase 13 severity ISO RGD PMID:33292020 RGD:155641236 NCBI chrNW_004936478:15,296,055...15,387,749
Ensembl chrNW_004936478:15,296,055...15,388,309 		JBrowse link
G Cdk2 cyclin dependent kinase 2 disease_progression ISO RGD PMID:18236071 RGD:2293557 NCBI chrNW_004936646:379,849...385,648
Ensembl chrNW_004936646:379,842...385,877 		JBrowse link
G Cdk4 cyclin dependent kinase 4 disease_progression ISO RGD PMID:16440198 RGD:2293576 NCBI chrNW_004936646:1,886,262...1,889,260 JBrowse link
G Cdkn1b cyclin dependent kinase inhibitor 1B ISO DNA:SNP
protein:increased localization:cytoplasm		 RGD PMID:12244302 PMID:18030569 PMID:18174243 RGD:2289652 RGD:2293594 RGD:734746 NCBI chrNW_004936587:4,573,166...4,578,480
Ensembl chrNW_004936587:4,572,728...4,578,461 		JBrowse link
G Cfb complement factor B treatment ISO RGD PMID:15274022 RGD:7411730 NCBI chrNW_004936727:1,595,872...1,602,274
Ensembl chrNW_004936727:1,595,499...1,602,215 		JBrowse link
G Cga glycoprotein hormones, alpha polypeptide disease_progression ISO RGD PMID:11687975 RGD:2293635 NCBI chrNW_004936510:4,679,349...4,696,511
Ensembl chrNW_004936510:4,679,321...4,696,529 		JBrowse link
G Chd4 chromodomain helicase DNA binding protein 4 ISO mRNA:increased expression:breast (human) RGD PMID:28486105 RGD:153323299 NCBI chrNW_004936709:1,183,243...1,214,144
Ensembl chrNW_004936709:1,183,254...1,214,149 		JBrowse link
G Chek2 checkpoint kinase 2 susceptibility ISO ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, somatic | ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant tumor of breast
DNA:loss of heterozygosity
DNA:deletion: ;1100delC
DNA:missense mutations:p.I157T and p.S428F		 OMIM
ClinVar
RGD		 PMID:2936834 PMID:3313277 PMID:9536098 PMID:10617473 PMID:11053450 More... RGD:1599601 RGD:2289703 RGD:2289706 NCBI chrNW_004936657:2,805,947...2,848,180
Ensembl chrNW_004936657:2,805,959...2,848,180 		JBrowse link
G Chi3l1 chitinase 3 like 1 severity ISO protein:increased secretion:serum (human) RGD PMID:12889595 RGD:4892603 NCBI chrNW_004936567:1,411,080...1,418,332
Ensembl chrNW_004936567:1,411,037...1,418,801 		JBrowse link
G Clu clusterin disease_progression ISO DNA:snp:promoter:g.27611345C>G (rs9331888) (human) RGD PMID:22037783 RGD:8963167 NCBI chrNW_004936675:499,745...513,515
Ensembl chrNW_004936675:499,199...513,836 		JBrowse link
G Comt catechol-O-methyltransferase disease_progression
no_association
susceptibility		 ISO DNA:polymorphism: :p.V158M
mRNA:increased expression:breast		 RGD PMID:15285606 PMID:17429315 PMID:17507616 PMID:17562079 RGD:2289710 RGD:2289712 RGD:2289715 RGD:2289721 NCBI chrNW_004936619:3,847,059...3,883,866
Ensembl chrNW_004936619:3,876,299...3,882,747 		JBrowse link
G Crp C-reactive protein ISO protein:increased expression:nipple aspirate fluid RGD PMID:21139810 RGD:9491787 NCBI chrNW_004936740:885,855...888,854
Ensembl chrNW_004936740:883,272...890,606 		JBrowse link
G Csf1 colony stimulating factor 1 ISO RGD PMID:18172291 RGD:2293639 NCBI chrNW_004936704:1,372,137...1,393,355
Ensembl chrNW_004936704:1,378,103...1,393,542 		JBrowse link
G Csf1r colony stimulating factor 1 receptor disease_progression
treatment		 ISO RGD PMID:14734466 PMID:25385645 RGD:150524304 RGD:2293711 NCBI chrNW_004936504:4,898,947...4,927,195
Ensembl chrNW_004936504:4,898,945...4,928,923 		JBrowse link
G Csnk2a1 casein kinase 2 alpha 1 ISO RGD PMID:11827167 RGD:727632 NCBI chrNW_004936485:17,966,993...18,021,191 JBrowse link
G Ctcf CCCTC-binding factor severity ISO protein:alternative form, increased expression:breast tumor (human) RGD PMID:19737964 RGD:151356756 NCBI chrNW_004936475:17,987,137...18,031,733
Ensembl chrNW_004936475:17,987,156...18,031,760 		JBrowse link
G Ctla4 cytotoxic T-lymphocyte associated protein 4 ISO DNA:SPNs:multiple:
protein:increased expression:serum:		 RGD PMID:17825114 PMID:20482250 RGD:7411684 RGD:7421502 NCBI chrNW_004936631:484,356...489,643
Ensembl chrNW_004936631:484,356...489,643 		JBrowse link
G Ctsd cathepsin D ISO human gene in a mouse model RGD PMID:12140763 RGD:1547890 NCBI chrNW_004936816:680,798...690,959
Ensembl chrNW_004936816:680,798...691,039 		JBrowse link
G CUNH11orf65 chromosome unknown C11orf65 homolog ISO ClinVar Annotator: match by term: Breast cancer, early-onset | ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:1160401 PMID:2166257 PMID:6504056 PMID:7792600 PMID:8659541 More... NCBI chrNW_004936551:305,617...343,369
Ensembl chrNW_004936551:305,611...351,063 		JBrowse link
G Ddr1 discoidin domain receptor tyrosine kinase 1 ISO mRNA, protein:increased expression:breast cancer tissue (human) RGD PMID:31578591 RGD:151347435 NCBI chrNW_004936837:523,227...538,799
Ensembl chrNW_004936837:523,266...538,833 		JBrowse link
G Ddx3x DEAD-box helicase 3 X-linked exacerbates ISO protein:increased expression:breast, nucleus (human) RGD PMID:28761359 RGD:151356502 NCBI chrNW_004936502:7,770,896...7,820,555
Ensembl chrNW_004936502:7,804,824...7,820,569 		JBrowse link
G Dicer1 dicer 1, ribonuclease III ISO ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:25741868 PMID:28492532 PMID:32714280 NCBI chrNW_004936846:528,768...584,599
Ensembl chrNW_004936846:532,972...575,689 		JBrowse link
G Dll4 delta like canonical Notch ligand 4 disease_progression ISO RGD PMID:20167860 RGD:155641260 NCBI chrNW_004936471:4,320,235...4,330,251
Ensembl chrNW_004936471:4,320,933...4,330,253 		JBrowse link
G Dusp1 dual specificity phosphatase 1 severity
disease_progression		 ISO DNA:hypermethylation:promoter
protein:increased expression:mammary gland
protein:increased expression:T cell		 RGD PMID:9724088 PMID:12618338 PMID:19417026 PMID:22333693 RGD:2298697 RGD:7495809 RGD:7495850 RGD:7495851 NCBI chrNW_004936609:2,688,170...2,691,057
Ensembl chrNW_004936609:2,688,181...2,690,408 		JBrowse link
G Dusp6 dual specificity phosphatase 6 ISO protein:increased expression:mammary gland RGD PMID:12618338 RGD:7495809 NCBI chrNW_004936507:6,309,114...6,314,512
Ensembl chrNW_004936507:6,308,886...6,313,935 		JBrowse link
G Ebag9 estrogen receptor binding site associated antigen 9 ISO DNA:amplification RGD PMID:12160478 RGD:2289857 NCBI chrNW_004936470:35,449,920...35,473,635
Ensembl chrNW_004936470:35,450,292...35,473,110 		JBrowse link
G Egfr epidermal growth factor receptor ISO mRNA:increased expression:breast RGD PMID:17465220 RGD:2289949 NCBI chrNW_004936678:365,005...560,546
Ensembl chrNW_004936678:365,834...436,528 		JBrowse link
G Egr1 early growth response 1 ISO protein:decreased expression:tumor (rat)
protein:decreased expression:tumor (human)		 RGD PMID:9212230 RGD:5131943 NCBI chrNW_004936531:7,625,956...7,629,041
Ensembl chrNW_004936531:7,625,892...7,629,749 		JBrowse link
G Eif3h eukaryotic translation initiation factor 3 subunit H ISO DNA:amplification RGD PMID:10362802 RGD:2289902 NCBI chrNW_004936470:29,509,154...29,606,124
Ensembl chrNW_004936470:29,509,151...29,606,124 		JBrowse link
G Eng endoglin treatment ISO human tumor in mouse model RGD PMID:11691802 RGD:7248784 NCBI chrNW_004936487:15,467,165...15,499,180
Ensembl chrNW_004936487:15,467,835...15,477,488 		JBrowse link
G Epo erythropoietin ISO protein:increased expression:breast: RGD PMID:12118093 RGD:11041669 NCBI chrNW_004936543:742,722...745,332
Ensembl chrNW_004936543:743,537...745,343 		JBrowse link
G Epor erythropoietin receptor ISO protein:increased expression:breast: RGD PMID:12118093 RGD:11041669 NCBI chrNW_004936659:1,468,391...1,473,880
Ensembl chrNW_004936659:1,468,634...1,473,880 		JBrowse link
G Erbb2 erb-b2 receptor tyrosine kinase 2 ISO OMIM:114480 MouseDO NCBI chrNW_004936490:14,887,062...14,910,038
Ensembl chrNW_004936490:14,887,043...14,909,956 		JBrowse link
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit susceptibility ISO DNA:snp:3' utr:c.8092C>A (human) RGD PMID:15958648 RGD:13207317 NCBI chrNW_004936706:1,854,938...1,867,521
Ensembl chrNW_004936706:1,852,359...1,867,745 		JBrowse link
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit susceptibility ISO DNA:haplotype:cds:6540G>A(D312N),18880A>C(p.K751Q)(human) RGD PMID:15598761 RGD:12880387 NCBI chrNW_004936706:1,816,561...1,829,638
Ensembl chrNW_004936706:1,816,571...1,829,692 		JBrowse link
G Espl1 extra spindle pole bodies like 1, separase ISO OMIM:114480 MouseDO NCBI chrNW_004936512:10,556,269...10,576,582
Ensembl chrNW_004936512:10,556,672...10,576,588 		JBrowse link
G Esr1 estrogen receptor 1 treatment
no_association
susceptibility
disease_progression		 ISO DNA:SNP: :908A>G (p.K303R) (human)
DNA:SNP:exon:2014G>A (human)
DNA:amplification
DNA:SNPs, haplotypes:promoter, exon
DNA:SNPs: :rs2234693, rs9340799 (human)		 OMIM
RGD		 PMID:15034868 PMID:15604249 PMID:19011961 PMID:19320640 PMID:19636371 More... RGD:8552978 RGD:8552979 RGD:8552980 RGD:8552981 RGD:8552982 RGD:8553053 NCBI chrNW_004936489:4,616,839...4,887,179
Ensembl chrNW_004936489:4,614,754...4,887,171 		JBrowse link
G Esr2 estrogen receptor 2 susceptibility
no_association
treatment		 ISO DNA:snps, haplotype:multiple (human)
DNA:snps:multiple (human)
DNA:snps, haplotype:exons:g.1082G>A, g.1730G>A, A>G (rs1256049, rs4986938, rs928554) (human)
DNA:snps:intron, exon:g.14206C>T, g.33390C>G (rs1256054) (human)
DNA:snp:promoter:g.-13950C>T (rs2987983) (human)
DNA:repeat:intron:IVS5(CA)9-31 (human)
associated with Benign Breast Disease;DNA:snp:3' utr:*5772A>G (rs8018687) (human)
DNA:repeat:3' utr:(CA)10-27 (human)
DNA:silent mutation:exon:g.1176C>G (rs1256054) (human)
DNA:snps:5' utr, exon, 3' utr:-12214C>T (rs1271572), A>G (rs928554), A>G (rs4986938) (human)		 RGD PMID:14633679 PMID:15604249 PMID:16261413 PMID:16808847 PMID:17904846 More... RGD:7364946 RGD:8552977 RGD:8552978 RGD:8693347 RGD:8693380 RGD:8693382 RGD:8694090 RGD:8694096 RGD:8694103 RGD:8694110 RGD:8694116 NCBI chrNW_004936495:7,956,168...8,018,356
Ensembl chrNW_004936495:7,956,766...8,004,357 		JBrowse link
G Ext1 exostosin glycosyltransferase 1 ISO ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:28492532 NCBI chrNW_004936470:28,303,213...28,566,470
Ensembl chrNW_004936470:28,303,828...28,566,118 		JBrowse link
G F10 coagulation factor X ISO DNA:SNP: :rs3093261 (human) RGD PMID:25407022 RGD:10449101 NCBI chrNW_004936472:475,851...502,341
Ensembl chrNW_004936472:475,333...502,377 		JBrowse link
G F11r F11 receptor disease_progression ISO RGD PMID:19533747 RGD:7488915 NCBI chrNW_004936903:317,975...338,892
Ensembl chrNW_004936903:315,716...338,932 		JBrowse link
G F5 coagulation factor V no_association ISO DNA:SNPs: :rs6025 (human)
DNA:SNPs: :multiple		 RGD PMID:25407022 RGD:10449101 NCBI chrNW_004936481:17,114,441...17,178,902
Ensembl chrNW_004936481:17,114,480...17,178,844 		JBrowse link
G F7 coagulation factor VII ISO mRNA:increased expression:breast (human) RGD PMID:19996301 RGD:11049547 NCBI chrNW_004936472:505,751...515,375
Ensembl chrNW_004936472:505,751...514,339 		JBrowse link
G Fanca FA complementation group A ISO ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:24728327 PMID:25741868 PMID:28492532 NCBI chrNW_004936641:281,119...319,796
Ensembl chrNW_004936641:281,073...324,053 		JBrowse link
G Fancb FA complementation group B ISO ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:25741868 PMID:28492532 NCBI chrNW_004936470:4,305,220...4,323,456
Ensembl chrNW_004936470:4,305,740...4,323,374 		JBrowse link
G Fancc FA complementation group C ISO ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:7492758 PMID:7689011 PMID:8081385 PMID:08128956 PMID:08348157 More... NCBI chrNW_004936626:3,980,311...4,147,042
Ensembl chrNW_004936626:3,982,647...4,159,976 		JBrowse link
G Fancd2 FA complementation group D2 ISO ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:24728327 PMID:25741868 PMID:28492532 PMID:33558524 NCBI chrNW_004936602:3,162,177...3,220,468
Ensembl chrNW_004936602:3,161,960...3,209,868 		JBrowse link
G Fance FA complementation group E ISO ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:25741868 PMID:28492532 NCBI chrNW_004936476:23,783,161...23,794,646
Ensembl chrNW_004936476:23,782,977...23,794,708 		JBrowse link
G Fancf FA complementation group F ISO ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:24728327 PMID:25741868 PMID:28492532 NCBI chrNW_004936654:3,298,193...3,301,251 JBrowse link
G Fanci FA complementation group I ISO ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:25741868 PMID:28492532 PMID:33558524 NCBI chrNW_004936483:15,096,215...15,179,856
Ensembl chrNW_004936483:15,106,902...15,179,094 		JBrowse link
G Fas Fas cell surface death receptor susceptibility ISO DNA:polymorphism:promoter:-1377G>A RGD PMID:17183065 RGD:2290054 NCBI chrNW_004936735:209,369...234,582 JBrowse link
G Fen1 flap structure-specific endonuclease 1 disease_progression ISO DNA,mRNA:hypomethylation,increased expression:promoter,breast RGD PMID:19010819 RGD:6484520 NCBI chrNW_004936581:1,328,685...1,332,713
Ensembl chrNW_004936581:1,328,685...1,332,728 		JBrowse link
G Fgf8 fibroblast growth factor 8 ISO mRNA:increased expression:breast epithelium:significant increase in both the number of tumors expressing FGF8 (p=0.019) and the absolute expression level (p=0.031) RGD PMID:10023681 RGD:2289344 NCBI chrNW_004936600:4,004,847...4,010,626
Ensembl chrNW_004936600:4,004,824...4,010,689 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 exacerbates ISO sporadic postmenopausal breast cancer; DNA:SNP:intron:dbSNP ID rs1219648, p=1.1x10-10
DNA:SNP:intron:dbSNP ID rs2981582, p=2X10-76		 RGD PMID:17529967 PMID:17529973 PMID:23185502 RGD:155663674 RGD:2289657 RGD:2289658 NCBI chrNW_004936486:10,506,680...10,606,272
Ensembl chrNW_004936486:10,507,097...10,602,019 		JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 ISO protein:altered localization:even cytoplasmic-nuclear distribution to primarily nuclear RGD PMID:11329138 RGD:2289867 NCBI chrNW_004936477:21,591,772...21,606,289
Ensembl chrNW_004936477:21,591,792...21,606,296 		JBrowse link
G Fh fumarate hydratase ISO ClinVar Annotator: match by term: Malignant tumor of breast ClinVar NCBI chrNW_004936526:8,936,096...8,965,155
Ensembl chrNW_004936526:8,935,991...8,965,367 		JBrowse link
G Flt1 fms related receptor tyrosine kinase 1 ISO protein:increased expression:mammary carcinoma cells RGD PMID:10604730 RGD:2289937 NCBI chrNW_004936472:23,442,946...23,617,523
Ensembl chrNW_004936472:23,440,088...23,617,041 		JBrowse link
G Foxa1 forkhead box A1 disease_progression ISO RGD PMID:27524420 RGD:151665821 NCBI chrNW_004936494:11,529,546...11,535,224
Ensembl chrNW_004936494:11,529,546...11,535,224 		JBrowse link
G Fubp1 far upstream element binding protein 1 exacerbates ISO protein:increased expression:breast (human) RGD PMID:27157613 RGD:151361193 NCBI chrNW_004936571:4,729,135...4,760,943
Ensembl chrNW_004936571:4,732,581...4,760,942 		JBrowse link
G Ghr growth hormone receptor ISO protein:increased expression:serum:cases versus controls (p<0.01) RGD PMID:17287408 RGD:2301716 NCBI chrNW_004936518:235,996...380,225
Ensembl chrNW_004936518:235,990...380,272 		JBrowse link
G Ghrh growth hormone releasing hormone ISO protein:increased expression:tumor:colloid, lobular, and infiltrating ductal carcinomas RGD PMID:1973621 RGD:2289972 NCBI chrNW_004936561:3,946,256...3,954,472
Ensembl chrNW_004936561:3,950,340...3,952,405 		JBrowse link
G Gnrh1 gonadotropin releasing hormone 1 severity ISO DNA:SNP:CDS:16Ser allele associated with decreased disease free survival alone (p=0.05) or in combination with the insLQ allele of LHCGR (p=0.001) RGD PMID:17692113 RGD:2292541 NCBI chrNW_004936757:1,282,185...1,285,804
Ensembl chrNW_004936757:1,282,185...1,285,832 		JBrowse link
G Gpx1 glutathione peroxidase 1 susceptibility ISO DNA:repeat:CDS: (human) RGD PMID:14744747 RGD:152995457 NCBI chrNW_004936529:997,943...999,123
Ensembl chrNW_004936529:998,150...998,987 		JBrowse link
G Grb2 growth factor receptor bound protein 2 treatment ISO RGD PMID:17372910 RGD:13504751 NCBI chrNW_004936594:592,760...661,369
Ensembl chrNW_004936594:592,740...661,369 		JBrowse link
G Gstp1 glutathione S-transferase pi 1 treatment ISO DNA:SNP:cds:p.I105V (rs1695) (human) RGD PMID:23812950 RGD:10755330 NCBI chrNW_004936599:2,197,681...2,200,642
Ensembl chrNW_004936599:2,197,634...2,201,050 		JBrowse link
G Hfe homeostatic iron regulator no_association
susceptibility		 ISO DNA:missense mutations, haplotype:cds:p.H63D, p.S65C, p.C282Y (human)
DNA:missense mutation:cds:p.C282Y (human)		 RGD PMID:14973098 PMID:15894659 RGD:8694348 RGD:8694349 NCBI chrNW_004936671:1,940,079...1,947,574
Ensembl chrNW_004936671:1,940,101...1,947,580 		JBrowse link
G Hgf hepatocyte growth factor ISO OMIM:114480 MouseDO NCBI chrNW_004936734:354,798...428,356
Ensembl chrNW_004936734:356,115...428,779 		JBrowse link
G Hmmr hyaluronan mediated motility receptor ISO ClinVar Annotator: match by term: Breast cancer, susceptibility to OMIM
ClinVar		 PMID:25741868 NCBI chrNW_004936515:570,112...599,400
Ensembl chrNW_004936515:571,139...600,132 		JBrowse link
G Icam1 intercellular adhesion molecule 1 ISO protein:increased expression:serum: RGD PMID:7686390 RGD:11520780 NCBI chrNW_004936659:616,570...627,172
Ensembl chrNW_004936659:616,752...627,174 		JBrowse link
G Ifng interferon gamma susceptibility ISO DNA:repeats:intron: RGD PMID:15900487 RGD:8157615 NCBI chrNW_004936545:6,139,130...6,144,543
Ensembl chrNW_004936545:6,139,116...6,148,452 		JBrowse link
G Igf1 insulin like growth factor 1 susceptibility ISO protein:increased expression:serum (rat) RGD PMID:17584969 RGD:2315650 NCBI chrNW_004936492:11,709,623...11,784,028
Ensembl chrNW_004936492:11,709,222...11,778,351 		JBrowse link
G Igf1r insulin like growth factor 1 receptor ISO protein: increased expression RGD PMID:21047775 RGD:7242794 NCBI chrNW_004936483:4,563,995...4,860,231
Ensembl chrNW_004936483:4,564,512...4,852,925 		JBrowse link
G Igf2 insulin like growth factor 2 ISO RGD PMID:18719053 RGD:2311512 NCBI chrNW_004936816:972,902...981,232
Ensembl chrNW_004936816:972,282...979,167 		JBrowse link
G Igfbp1 insulin like growth factor binding protein 1 no_association ISO higher serum expression in cases vs controls but association not significant in multivariate analysis
protein:decreased expression:serum:in patients with breast cancer versus benign breast disease (p=0.001)		 RGD PMID:10069662 PMID:17287408 RGD:2301715 RGD:2301716 NCBI chrNW_004936478:20,494,190...20,499,001
Ensembl chrNW_004936478:20,494,203...20,499,001 		JBrowse link
G Igfbp3 insulin like growth factor binding protein 3 no_association ISO protein:decreased expression:serum
DNA:SNP:promoter:no association with rs2854744, 677 cases and 834 controls from the Nurses' Health Study
DNA:SNP:promoter,CDS:variant allele of multiple SNPs including rs2854744, associated with increased risk singly and in combination, 1,193 patients and 1,310 control Chinese women in Shanghai		 RGD PMID:10069662 PMID:12925957 PMID:15298948 PMID:17287408 RGD:2290009 RGD:2290011 RGD:2301715 RGD:2301716 NCBI chrNW_004936478:20,511,490...20,518,251
Ensembl chrNW_004936478:20,510,137...20,518,306 		JBrowse link
G Igfbp6 insulin like growth factor binding protein 6 no_association ISO lower serum expression in cases vs controls but association not significant in multivariate analysis
protein:decreased expression:serum:in patients with breast cancer versus benign breast disease (p=0.016)		 RGD PMID:10069662 PMID:17287408 RGD:2301715 RGD:2301716 NCBI chrNW_004936512:10,415,004...10,419,698
Ensembl chrNW_004936512:10,414,807...10,419,741 		JBrowse link
G Ikbkb inhibitor of nuclear factor kappa B kinase subunit beta susceptibility ISO DNA:SNPs: :multiple RGD PMID:22562547 RGD:6484541 NCBI chrNW_004936785:358,128...406,751
Ensembl chrNW_004936785:356,168...406,773 		JBrowse link
G Il13ra2 interleukin 13 receptor subunit alpha 2 treatment ISO RGD PMID:11748276 PMID:17438063 RGD:8549514 RGD:8549557 NCBI chrNW_004936499:860,179...883,884
Ensembl chrNW_004936499:863,599...883,855 		JBrowse link
G Il18 interleukin 18 no_association ISO protein:increased expression:serum
DNA:SNP:promoter:-137G>C (rs187238) (human)
DNA:SNP:promoter:-607C>A (rs1946518) (human)		 RGD PMID:12209760 PMID:19152241 RGD:8655866 RGD:8655899 NCBI chrNW_004936612:2,306,963...2,325,086
Ensembl chrNW_004936612:2,306,875...2,325,189 		JBrowse link
G Il1b interleukin 1 beta susceptibility ISO DNA:polymorphism:promoter:-31T>C (human) RGD PMID:21653279 RGD:7401222 NCBI chrNW_004936783:1,251,678...1,256,807
Ensembl chrNW_004936783:1,252,158...1,257,165 		JBrowse link
G Il6 interleukin 6 susceptibility ISO DNA:polymorphism::rs2069832(human) RGD PMID:17594514 RGD:7829720 NCBI chrNW_004936549:7,015,595...7,016,246 JBrowse link
G Insr insulin receptor severity ISO protein:increased expression:tumor:four-fold higher vs normal breast tissue
protein:increased expression:tumor:higher expression associated with favorable prognostic markers and increased disease-free survival (P=0.027)		 RGD PMID:8518410 PMID:17221153 RGD:2290447 RGD:2290465 NCBI chrNW_004936588:4,345,306...4,453,380
Ensembl chrNW_004936588:4,345,306...4,453,668 		JBrowse link
G Itga1 integrin subunit alpha 1 ISO protein:decreased expression:tumor:down-regulated in tumors lacking a basement membrane RGD PMID:9408292 RGD:2302120 NCBI chrNW_004936480:14,442,481...14,591,574
Ensembl chrNW_004936480:14,443,685...14,591,380 		JBrowse link
G Jun Jun proto-oncogene, AP-1 transcription factor subunit ISO protein:increased activation:tumor: 50% of cases showed activated protein present in mitotic cells at the invasive front, associated with tumor cell proliferation and microvessel density RGD PMID:16733206 RGD:2290479 NCBI chrNW_004936522:3,034,364...3,037,632
Ensembl chrNW_004936522:3,035,346...3,036,350 		JBrowse link
G Kat2b lysine acetyltransferase 2B severity ISO mRNA:increased expression:breast (human) RGD PMID:22199269 RGD:9586031 NCBI chrNW_004936473:12,341,545...12,415,637
Ensembl chrNW_004936473:12,344,343...12,417,875 		JBrowse link
G Kat5 lysine acetyltransferase 5 severity ISO mRNA:altered expression:breast (human) RGD PMID:22199269 RGD:9586031 NCBI chrNW_004936599:3,767,526...3,775,416
Ensembl chrNW_004936599:3,766,242...3,776,128 		JBrowse link
G Kat6b lysine acetyltransferase 6B ISO DNA:missense mutations:cds:p.D1516Y, p.R1577C (human) RGD PMID:23800003 RGD:9590339 NCBI chrNW_004936521:4,309,699...4,497,755
Ensembl chrNW_004936521:4,309,694...4,496,904 		JBrowse link
G Kat7 lysine acetyltransferase 7 severity ISO protein:increased expression:breast (human) RGD PMID:21040551 RGD:9681004 NCBI chrNW_004936490:11,775,224...11,805,489
Ensembl chrNW_004936490:11,772,046...11,805,759 		JBrowse link
G Kat8 lysine acetyltransferase 8 severity ISO mRNA:increased expression:breast (human) RGD PMID:22199269 RGD:9586031 NCBI chrNW_004936501:13,475,676...13,487,617
Ensembl chrNW_004936501:13,474,735...13,489,341 		JBrowse link
G Kdm1a lysine demethylase 1A severity ISO mRNA:increased expression:breast (human)
protein:increased expression:breast (rat)		 RGD PMID:22199269 PMID:23516587 RGD:9586031 RGD:9588313 NCBI chrNW_004936474:8,262,913...8,319,089
Ensembl chrNW_004936474:8,262,885...8,319,092 		JBrowse link
G Kdm3b lysine demethylase 3B severity ISO mRNA:decreased expression:breast (human) RGD PMID:23266085 RGD:9586731 NCBI chrNW_004936531:7,517,810...7,600,319
Ensembl chrNW_004936531:7,516,125...7,600,347 		JBrowse link
G Kdm4a lysine demethylase 4A severity ISO mRNA:altered expression:breast (human) RGD PMID:22199269 RGD:9586031 NCBI chrNW_004936474:25,002,527...25,056,642
Ensembl chrNW_004936474:25,002,509...25,056,642 		JBrowse link
G Kdm4b lysine demethylase 4B treatment
severity		 ISO human gene in a mouse model
mRNA:decreased expression:breast (human)		 RGD PMID:21445275 RGD:9587754 NCBI chrNW_004936588:2,908,970...3,005,625
Ensembl chrNW_004936588:2,908,899...3,005,674 		JBrowse link
G Kdm4c lysine demethylase 4C severity ISO DNA:snp:cds:p.D396N (rs2296067) (human) RGD PMID:24952432 RGD:9587745 NCBI chrNW_004936539:1,198,105...1,580,078
Ensembl chrNW_004936539:1,198,147...1,580,082 		JBrowse link
G Kdm5a lysine demethylase 5A severity ISO mRNA:decreased expression:breast (human) RGD PMID:23266085 RGD:9586731 NCBI chrNW_004936606:486,424...570,546
Ensembl chrNW_004936606:485,655...570,739 		JBrowse link
G Kdm5b lysine demethylase 5B treatment ISO human gene in a mouse model RGD PMID:21369698 RGD:9587774 NCBI chrNW_004936567:1,782,056...1,860,861
Ensembl chrNW_004936567:1,781,995...1,863,461 		JBrowse link
G Kdm5c lysine demethylase 5C severity ISO mRNA:altered expression:breast (human) RGD PMID:22199269 RGD:9586031 NCBI chrNW_004936751:159,628...204,136
Ensembl chrNW_004936751:167,920...203,966 		JBrowse link
G Kdm6a lysine demethylase 6A severity ISO mRNA:increased expression:breast (human) RGD PMID:22199269 PMID:23266085 RGD:9586031 RGD:9586731 NCBI chrNW_004936502:10,980,303...11,196,711
Ensembl chrNW_004936502:10,980,118...11,196,163 		JBrowse link
G Kdm8 lysine demethylase 8 ISO mRNA:increased expression:breast (human) RGD PMID:20457893 RGD:9587844 NCBI chrNW_004936501:10,932,541...10,955,772
Ensembl chrNW_004936501:10,933,671...10,951,707 		JBrowse link
G Kdr kinase insert domain receptor ISO protein:increased expression, increased activity:tumor:increased activated KDR in mammary carcinomas vs adjacent normal tissues RGD PMID:10371349 RGD:2291951 NCBI chrNW_004936482:17,537,697...17,581,320
Ensembl chrNW_004936482:17,538,864...17,581,002 		JBrowse link
G Kif1b kinesin family member 1B ISO ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:18334619 PMID:24469107 PMID:24694336 PMID:25741868 PMID:28492532 NCBI chrNW_004936623:4,091,093...4,222,510
Ensembl chrNW_004936623:4,091,190...4,218,251 		JBrowse link
G Kiss1r KISS1 receptor severity ISO mRNA:increased expression:tumor:high levels of both KISS1 and KISS1R in ERalpha+ tumors treated with tamoxifen associated with shorter relapse-free survival RGD PMID:17914099 RGD:2292123 NCBI chrNW_004936588:384,195...387,625
Ensembl chrNW_004936588:384,195...386,820 		JBrowse link
G Klc1 kinesin light chain 1 ISO ClinVar Annotator: match by term: Breast cancer, susceptibility to ClinVar PMID:12023982 NCBI chrNW_004936621:1,471,574...1,505,119
Ensembl chrNW_004936621:1,543,444...1,560,076
Ensembl chrNW_004936621:1,543,444...1,560,076 		JBrowse link
G Klk4 kallikrein related peptidase 4 severity
disease_progression		 ISO mRNA, protein:increased expression:breast RGD PMID:18687310 PMID:19190825 RGD:2314852 RGD:2314853 NCBI chrNW_004936889:583,259...586,412
Ensembl chrNW_004936889:583,302...586,412 		JBrowse link
G Kmt2b lysine methyltransferase 2B severity ISO mRNA:increased expression:breast (human) RGD PMID:24491801 RGD:9588564 NCBI chrNW_004936570:583,616...605,846
Ensembl chrNW_004936570:583,616...605,603 		JBrowse link
G Kmt2d lysine methyltransferase 2D ISO mRNA:decreased expression:breast (human) RGD PMID:23754336 RGD:9588236 NCBI chrNW_004936512:6,819,240...6,860,852
Ensembl chrNW_004936512:6,822,057...6,854,451 		JBrowse link
G Kmt2e lysine methyltransferase 2E (inactive) ISO mRNA:decreased expression:breast (human) RGD PMID:23754336 RGD:9588236 NCBI chrNW_004936479:18,674,657...18,764,177
Ensembl chrNW_004936479:18,675,413...18,738,983 		JBrowse link
G Kras KRAS proto-oncogene, GTPase ISO ClinVar Annotator: match by term: Breast cancer, somatic OMIM
ClinVar		 PMID:2278970 PMID:2547513 PMID:3122217 PMID:3627975 PMID:12460918 More... NCBI chrNW_004936548:2,078,568...2,113,877
Ensembl chrNW_004936548:2,079,036...2,110,523 		JBrowse link
G Ksr1 kinase suppressor of ras 1 disease_progression ISO RGD PMID:24909178 RGD:127229932 NCBI chrNW_004936538:3,945,411...4,006,300
Ensembl chrNW_004936538:3,863,771...4,011,649 		JBrowse link
G L3mbtl1 L3MBTL histone methyl-lysine binding protein 1 severity ISO mRNA:decreased expression:breast (human) RGD PMID:21837478 RGD:9588606 NCBI chrNW_004936530:3,038,873...3,069,724
Ensembl chrNW_004936530:3,038,847...3,069,494 		JBrowse link
G Lep leptin ISO protein:increased expression:serum RGD PMID:16019138 RGD:8694425 NCBI chrNW_004936479:15,394,966...15,411,334
Ensembl chrNW_004936479:15,394,966...15,411,334 		JBrowse link
G Letmd1 LETM1 domain containing 1 ISO protein:increased expression:breast RGD PMID:19208263 RGD:2314917 NCBI chrNW_004936512:8,684,597...8,694,074
Ensembl chrNW_004936512:8,684,587...8,694,074 		JBrowse link
G Lhcgr luteinizing hormone/choriogonadotropin receptor onset
severity		 ISO DNA:insertion:CDS:insLQ allele associated with earlier onset (51.9 vs 60.2 yrs, p=0.03)
DNA:SNP:CDS:rs2293275, 312Asn allele associated with a slight increase in risk in two patient cohorts (p=0.03 and p=0.001)
DNA:insertion:CDS:insLQ allele associated with decreased disease free survival alone (p=0.007) or in combination with the 16Ser allele of GNRH1 (p=0.001)		 RGD PMID:12679452 PMID:17692113 PMID:17709176 RGD:2292539 RGD:2292541 RGD:2292545 NCBI chrNW_004936508:3,928,467...3,983,481
Ensembl chrNW_004936508:3,928,466...3,983,890 		JBrowse link
G Lnpep leucyl and cystinyl aminopeptidase ISO protein:increased expression:breast RGD PMID:10508127 RGD:2314923 NCBI chrNW_004936523:6,443,571...6,533,122
Ensembl chrNW_004936523:6,445,939...6,532,566 		JBrowse link
G LOC101954950 aromatase treatment ISO DNA:repeat::(TTTA)10 (human)
DNA:SNP:cds:rs700518 (human)		 RGD PMID:7053713 PMID:16875543 PMID:23643682 RGD:2301046 RGD:7257707 RGD:7257716 NCBI chrNW_004936471:13,107,603...13,136,910
Ensembl chrNW_004936471:13,107,603...13,136,910 		JBrowse link
G LOC101962805 NADH-cytochrome b5 reductase 3 susceptibility ISO DNA:polymporhism:(rs8190370)(human) RGD PMID:25225034 RGD:11040537 NCBI chrNW_004936718:552,369...564,195
Ensembl chrNW_004936718:549,938...564,195 		JBrowse link
G LOC101968921 angiotensin-converting enzyme susceptibility ISO DNA:insertion/deletion, haplotype RGD PMID:23828384 RGD:8548866 NCBI chrNW_004936541:4,157,847...4,178,156
Ensembl chrNW_004936541:4,157,393...4,178,177 		JBrowse link
G LOC101969148 cytochrome P450 1A1 no_association ISO DNA:transitions:exon, 3' utr:4889A>G, 6235T>C (human)
DNA:SNP::rs4646903 (human)
DNA:SNP: :p.I462V (rs1048943) (human)
DNA:SNP:3' utr:6235T>C (human)
DNA:polymorphisms: :multiple		 RGD PMID:9426059 PMID:12496044 PMID:17603290 PMID:18497059 PMID:21418988 RGD:2301045 RGD:8552792 RGD:8552794 RGD:8552799 RGD:8552810 NCBI chrNW_004936471:33,682,730...33,688,332
Ensembl chrNW_004936471:33,682,730...33,688,332 		JBrowse link
G LOC101969421 cytochrome P450 1A2 ISO DNA:SNP::differences in allele and genotype distribution for CYP1A2*1F polymorphism (p=0.0000005) RGD PMID:18497059 RGD:2301045 NCBI chrNW_004936471:33,704,616...33,709,455
Ensembl chrNW_004936471:33,703,792...33,709,484 		JBrowse link
G LOC101970101 cytochrome P450 1B1 susceptibility ISO DNA:snp:cds:p.A119S (human) RGD PMID:10739169 RGD:7829734 NCBI chrNW_004936663:345,021...355,188
Ensembl chrNW_004936663:348,368...355,191 		JBrowse link
G LOC101970767 steroid 17-alpha-hydroxylase/17,20 lyase ISO ClinVar Annotator: match by term: Breast cancer, susceptibility to ClinVar PMID:1740503 PMID:16121340 PMID:17192295 PMID:20197673 PMID:22309630 More... NCBI chrNW_004936600:3,097,620...3,102,713
Ensembl chrNW_004936600:3,097,638...3,102,713 		JBrowse link
G Lta lymphotoxin alpha susceptibility ISO DNA:polymorphism, haplotype: :252A>G (human)
DNA:SNP:intron		 RGD PMID:11841482 PMID:18409070 RGD:8548786 RGD:8548791 NCBI chrNW_004936727:1,940,081...1,941,022
Ensembl chrNW_004936727:1,940,081...1,941,022 		JBrowse link
G Manf mesencephalic astrocyte derived neurotrophic factor susceptibility ISO RGD PMID:8971156 RGD:1599219 NCBI chrNW_004936529:2,774,651...2,777,960
Ensembl chrNW_004936529:2,774,543...2,779,579 		JBrowse link
G Map2k1 mitogen-activated protein kinase kinase 1 ISO protein:increased expression, increased activity:tumor RGD PMID:10216485 RGD:2292627 NCBI chrNW_004936471:26,589,251...26,628,302
Ensembl chrNW_004936471:26,589,161...26,628,302 		JBrowse link
G Map2k2 mitogen-activated protein kinase kinase 2 ISO protein:increased expression, increased activity:tumor RGD PMID:10216485 RGD:2292627 NCBI chrNW_004936588:2,338,127...2,377,090
Ensembl chrNW_004936588:2,336,858...2,377,090 		JBrowse link
G Map2k3 mitogen-activated protein kinase kinase 3 ISO protein:increased protein:mammary gland RGD PMID:12618338 PMID:24233520 RGD:7495808 RGD:7495809 NCBI chrNW_004936741:362,682...386,633
Ensembl chrNW_004936741:362,387...386,678 		JBrowse link
G Map2k7 mitogen-activated protein kinase kinase 7 exacerbates ISO mRNA:splice variant:exon 2: (human) RGD PMID:21317887 PMID:32601196 RGD:155230826 RGD:155249848 NCBI chrNW_004936588:4,882,191...4,891,807
Ensembl chrNW_004936588:4,882,184...4,892,071 		JBrowse link
G Map3k1 mitogen-activated protein kinase kinase kinase 1 disease_progression ISO mRNA:increased expression:tumor:increased expression in luminal A and normal-like vs other molecular subtypes, (p=5.2x10e-5)
DNA:SNP:linkage disequilibrium block:minor allele of SNP rs889312, p=7x10e-20
DNA:SNP:linkage disequilibrium block:minor allele associated with reduced risk of lymph node involvement at diagnosis (p=0.044)		 RGD PMID:17529967 PMID:17997823 PMID:18036273 RGD:2289657 RGD:2293356 RGD:2293357 NCBI chrNW_004936480:11,082,811...11,156,691
Ensembl chrNW_004936480:11,083,605...11,156,691 		JBrowse link
G Map3k8 mitogen-activated protein kinase kinase kinase 8 ISO RGD PMID:10490831 RGD:151356925 NCBI chrNW_004936613:3,791,684...3,813,857
Ensembl chrNW_004936613:3,791,681...3,813,892 		JBrowse link
G Mapk1 mitogen-activated protein kinase 1 ISO protein:increased expression, increased phosphorylation:breast RGD PMID:15928662 RGD:2314939 NCBI chrNW_004936619:1,889,841...1,932,646
Ensembl chrNW_004936619:1,889,708...1,932,646 		JBrowse link
G Mapk15 mitogen-activated protein kinase 15 disease_progression ISO protein:decreased expression:tumor (human) RGD PMID:12917323 RGD:2304230 NCBI chrNW_004936470:8,420,850...8,425,996
Ensembl chrNW_004936470:8,420,732...8,425,884 		JBrowse link
G Mapt microtubule associated protein tau disease_progression ISO RGD PMID:18668363 RGD:8158093 NCBI chrNW_004936541:2,381,411...2,479,984 JBrowse link
G Mc1r melanocortin 1 receptor ISO ClinVar Annotator: match by term: Malignant breast neoplasm ClinVar PMID:9302268 PMID:9665397 PMID:10631149 PMID:12876664 PMID:15994880 More... NCBI chrNW_004936641:193,885...198,730 JBrowse link
G Mcph1 microcephalin 1 severity ISO DNA:silent mutation, missense mutation:cds:p.S742, p.A761V (rs2912010, rs1057090) (human) RGD PMID:23296058 RGD:9589038 NCBI chrNW_004936615:4,386,667...4,580,720
Ensembl chrNW_004936615:4,386,635...4,580,747 		JBrowse link
G Mdm2 MDM2 proto-oncogene ISO protein:increased expression:breast tumor (rat) RGD PMID:15844214 RGD:2293626 NCBI chrNW_004936545:6,709,903...6,732,334 JBrowse link
G Met MET proto-oncogene, receptor tyrosine kinase ISO OMIM:114480 MouseDO NCBI chrNW_004936589:2,280,803...2,390,179
Ensembl chrNW_004936589:2,280,799...2,390,179 		JBrowse link
G Mgmt O-6-methylguanine-DNA methyltransferase susceptibility
severity		 ISO DNA:polymorphisms:cds:p.L84F, p.I143V (human)
protein:decreased expression:tumor (human)		 RGD PMID:15741301 PMID:16014702 RGD:2317675 RGD:2317691 NCBI chrNW_004936486:16,744,607...16,923,209
Ensembl chrNW_004936486:16,744,570...16,923,543 		JBrowse link
G Mki67 marker of proliferation Ki-67 disease_progression ISO RGD PMID:21880954 PMID:22004841 RGD:6483516 RGD:6483528 NCBI chrNW_004936486:15,561,327...15,587,109 JBrowse link
G Mlh1 mutL homolog 1 ISO ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:9506527 PMID:9718327 PMID:10446963 PMID:10713887 PMID:11606497 More... NCBI chrNW_004936473:26,556,636...26,600,830
Ensembl chrNW_004936473:26,556,611...26,603,736 		JBrowse link
G Mlh3 mutL homolog 3 ISO ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:25741868 PMID:28492532 NCBI chrNW_004936488:4,164,322...4,195,408
Ensembl chrNW_004936488:4,164,918...4,195,517 		JBrowse link
G Mmp1 matrix metallopeptidase 1 susceptibility
disease_progression		 ISO DNA:insertion:promoter:g.-1607insG (human)
protein:increased expression:breast, stromal cell (human)
protein:decreased expression:plasma		 RGD PMID:12473595 PMID:18366705 PMID:21835023 RGD:2298552 RGD:7207138 RGD:7207143 NCBI chrNW_004936551:5,167,909...5,175,149
Ensembl chrNW_004936551:5,168,044...5,174,857 		JBrowse link
G Mmp8 matrix metallopeptidase 8 disease_progression ISO protein:increased expression:plasma:levels higher in patients with moderate lymph node involvement relative to controls and patients with no involvement (p=0.001)
DNA:SNP:promoter:minor (T) allele of rs11225395 associated with reduced lymph node metastasis, reduced relapse and greater disease-free survival (p=0.02)		 RGD PMID:17974962 PMID:18366705 RGD:2298552 RGD:2298553 NCBI chrNW_004936551:5,228,950...5,238,948
Ensembl chrNW_004936551:5,228,950...5,238,948 		JBrowse link
G Msh2 mutS homolog 2 susceptibility ISO DNA:polymorphism:cds:p.G322D
ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, somatic | ClinVar Annotator: match by term: Malignant tumor of breast		 RGD
ClinVar		 PMID:8613431 PMID:9718327 PMID:10080150 PMID:10422993 PMID:10777691 More... RGD:2293512 NCBI chrNW_004936508:4,943,987...5,013,356
Ensembl chrNW_004936508:4,944,007...5,013,356 		JBrowse link
G Msh6 mutS homolog 6 ISO ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:10508506 PMID:10537275 PMID:11153917 PMID:11586295 PMID:11709755 More... NCBI chrNW_004936508:4,708,661...4,728,671
Ensembl chrNW_004936508:4,708,661...4,728,787 		JBrowse link
G Muc1 mucin 1, cell surface associated ISO RGD PMID:8869094 RGD:7349378 NCBI chrNW_004936580:4,691,870...4,694,092 JBrowse link
G Mutyh mutY DNA glycosylase ISO ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:16557584 PMID:21195604 PMID:25741868 PMID:26467025 PMID:26900293 More... NCBI chrNW_004936474:26,484,316...26,492,652
Ensembl chrNW_004936474:26,481,211...26,493,019 		JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor severity ISO protein:increased expression:mammary gland (rat)
OMIM:114480
DNA:amplification:exon (human)		 RGD
MouseDO		 PMID:10706127 PMID:22614519 RGD:7207838 RGD:7241002 NCBI chrNW_004936470:20,480,844...20,485,955
Ensembl chrNW_004936470:20,480,829...20,485,965 		JBrowse link
G Myd88 MYD88 innate immune signal transduction adaptor exacerbates ISO RNA:increased expression:breast (human) RGD PMID:26596839 RGD:150524333 NCBI chrNW_004936473:27,672,237...27,676,339
Ensembl chrNW_004936473:27,671,797...27,676,372 		JBrowse link
G Nbn nibrin disease_progression
susceptibility		 ISO protein:decreased expression:breast
ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
DNA:SNP
DNA:missense mutation:exon:p.I171V		 RGD
ClinVar		 PMID:9590180 PMID:9590181 PMID:9620777 PMID:10398434 PMID:10799436 More... RGD:2298991 RGD:2298992 RGD:2298993 NCBI chrNW_004936544:3,773,828...3,812,673
Ensembl chrNW_004936544:3,775,220...3,808,837 		JBrowse link
G Ncoa3 nuclear receptor coactivator 3 ISO RGD PMID:20051871 RGD:5688283 NCBI chrNW_004936514:5,900,135...5,967,862
Ensembl chrNW_004936514:5,901,601...5,967,865 		JBrowse link
G Ncoa6 nuclear receptor coactivator 6 ISO DNA:amplification:cds (human) RGD PMID:10567404 RGD:9590137 NCBI chrNW_004936561:5,905,905...5,982,824
Ensembl chrNW_004936561:5,906,485...5,982,268 		JBrowse link
G Ncor2 nuclear receptor corepressor 2 disease_progression ISO RGD PMID:19904269 RGD:2314971 NCBI chrNW_004936558:658,723...775,263
Ensembl chrNW_004936558:677,610...775,288 		JBrowse link
G Nf2 NF2, moesin-ezrin-radixin like (MERLIN) tumor suppressor ISO ClinVar Annotator: match by term: Malignant tumor of breast ClinVar PMID:25741868 PMID:28492532 NCBI chrNW_004936657:3,536,212...3,622,999
Ensembl chrNW_004936657:3,536,141...3,623,821 		JBrowse link
G Nfkb1 nuclear factor kappa B subunit 1 treatment ISO DNA:SNPs, haplotype: :multiple RGD PMID:28797847 RGD:13506729 NCBI chrNW_004936520:733,760...850,563
Ensembl chrNW_004936520:733,668...829,435 		JBrowse link
G Nod2 nucleotide binding oligomerization domain containing 2 susceptibility ISO DNA:insertion: : 3020_3021insC (human) RGD PMID:16267612 RGD:5131514 NCBI chrNW_004936475:3,708,069...3,742,845
Ensembl chrNW_004936475:3,713,362...3,745,982 		JBrowse link
G Nos3 nitric oxide synthase 3 no_association
disease_progression
susceptibility		 ISO DNA:polymorphism:exon:p.E298D (human)
DNA:polymorphisms
DNA:polymorphism:promoter:-786T>C (human)		 RGD PMID:16807677 PMID:17063466 PMID:17891484 RGD:2292068 RGD:2292074 RGD:2292075 NCBI chrNW_004936527:6,427,147...6,445,770
Ensembl chrNW_004936527:6,427,093...6,446,534 		JBrowse link
G Nqo1 NAD(P)H quinone dehydrogenase 1 ISO ClinVar Annotator: match by term: Breast cancer, post-chemotherapy poor survival in ClinVar PMID:1737339 PMID:6933553 PMID:9000600 PMID:9230185 PMID:9328142 More... NCBI chrNW_004936475:19,771,384...19,785,034
Ensembl chrNW_004936475:19,769,488...19,785,311 		JBrowse link
G Nuf2 NUF2 component of NDC80 kinetochore complex disease_progression ISO RGD PMID:31140425 PMID:31198978 RGD:28867230 RGD:28867231 NCBI chrNW_004936481:21,342,667...21,371,311
Ensembl chrNW_004936481:21,342,786...21,371,328 		JBrowse link
G Ogg1 8-oxoguanine DNA glycosylase no_association
susceptibility
disease_progression		 ISO DNA:SNPs:5' utr:c.-23A>G, c.-45G>A, c.-63G>C, (human)
protein:increased expression:breast
DNA:transition:intron:IVS1+22G>A (human)
DNA:polymorphism: :11657A>G (human)
DNA:polymorphisms: :p.S326C, 7143A>G (human)
DNA:SNPs: :rs2072668, p.S326C (human)
DNA:SNPs:5' utr:c.-18G>T, c.-53G>C (human)
DNA:SNP: :p.S326C (human)
DNA:polymorphisms: :p.R229Q (human)
DNA:hypermethylation:promoter
DNA:missense mutation: :p.S326C (rs1052133) (human)		 RGD PMID:11536371 PMID:16492928 PMID:16614128 PMID:20183911 PMID:21153698 More... RGD:8657139 RGD:8657140 RGD:8657149 RGD:8657157 RGD:8657368 RGD:8657370 RGD:8657371 RGD:8657373 NCBI chrNW_004936602:3,411,106...3,418,826
Ensembl chrNW_004936602:3,413,282...3,418,831 		JBrowse link
G Pak1 p21 (RAC1) activated kinase 1 ISO DNA:amplification
mRNA:increased expression:breast		 RGD PMID:16705121 PMID:17486065 PMID:28055013 RGD:156430322 RGD:2299165 RGD:2299167 NCBI chrNW_004936498:6,001,126...6,135,663
Ensembl chrNW_004936498:6,001,014...6,086,614 		JBrowse link
G Palb2 partner and localizer of BRCA2 ISO ClinVar Annotator: match by term: Breast cancer, somatic | ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast
ClinVar Annotator: match by term: Breast cancer, lobular | ClinVar Annotator: match by term: Breast cancer, susceptibility to | ClinVar Annotator: match by term: Malignant breast neoplasm | ClinVar Annotator: match by term: Malignant tumor of breast		 OMIM
ClinVar		 PMID:9536098 PMID:16199547 PMID:16793542 PMID:17200668 PMID:17200671