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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.

Term:gastrointestinal carcinoma
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Accession:DOID:0050922 term browser browse the term
Definition:A gastrointestinal system cancer that has_material_basis_in epithelial cells. (DO)
Synonyms:primary_id: RDO:9004722
For additional species annotation, visit the Alliance of Genome Resources.



show annotations for term's descendants           Sort by:
 
gastrointestinal carcinoma term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chek2 checkpoint kinase 2 ISO ClinVar Annotator: match by term: Gastrointestinal carcinoma ClinVar PMID:10617473 PMID:11053450 PMID:11298456 PMID:11390408 PMID:11461078 More... NCBI chr12:45,788,823...45,821,382
Ensembl chr12:45,788,827...45,821,286
JBrowse link
G Nod2 nucleotide-binding oligomerization domain containing 2 ISO associated with Helicobacter Infections;DNA:SNP: :c.802C>T (human) RGD PMID:20230816 RGD:5508759 NCBI chr19:18,379,720...18,422,817
Ensembl chr19:18,382,439...18,417,177
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  disease 17251
    disease of cellular proliferation 7049
      cancer 5012
        cell type cancer 3405
          carcinoma 2923
            gastrointestinal carcinoma 2
              anal Paget's disease + 0
Path 2
Term Annotations click to browse term
  disease 17251
    disease of cellular proliferation 7049
      Neoplasms by Site 6694
        Digestive System Neoplasms 3434
          Gastrointestinal Neoplasms 3315
            gastrointestinal system cancer 2534
              gastrointestinal carcinoma 2
                anal Paget's disease + 0
paths to the root