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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.

Term:gastrointestinal carcinoma
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Accession:DOID:0050922 term browser browse the term
Definition:A gastrointestinal system cancer that has_material_basis_in epithelial cells. (DO)
Synonyms:primary_id: RDO:9004722
For additional species annotation, visit the Alliance of Genome Resources.



show annotations for term's descendants           Sort by:
 
gastrointestinal carcinoma term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHEK2 checkpoint kinase 2 ISO ClinVar Annotator: match by term: Gastrointestinal carcinoma ClinVar PMID:10617473 PMID:11053450 PMID:11298456 PMID:11390408 PMID:11461078 More... NCBI chr26:22,052,256...22,145,675
Ensembl chr26:21,427,961...22,240,624
JBrowse link
G NOD2 nucleotide binding oligomerization domain containing 2 ISO associated with Helicobacter Infections;DNA:SNP: :c.802C>T (human) RGD PMID:20230816 RGD:5508759 NCBI chr 2:64,636,850...64,667,232
Ensembl chr 2:64,635,519...64,667,232
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  disease 13842
    disease of cellular proliferation 6647
      cancer 4798
        cell type cancer 3282
          carcinoma 2811
            gastrointestinal carcinoma 2
              anal Paget's disease + 0
Path 2
Term Annotations click to browse term
  disease 13842
    disease of cellular proliferation 6647
      Neoplasms by Site 6303
        Digestive System Neoplasms 3303
          Gastrointestinal Neoplasms 3196
            gastrointestinal system cancer 2465
              gastrointestinal carcinoma 2
                anal Paget's disease + 0
paths to the root