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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.
Term:gastrointestinal carcinoma
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Accession:DOID:0050922 term browser browse the term
Definition:A gastrointestinal system cancer that has_material_basis_in epithelial cells. (DO)
Synonyms:primary_id: RDO:9004722
 xref: EFO:1000218


show annotations for term's descendants           Sort by:
gastrointestinal carcinoma term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chek2 checkpoint kinase 2 ISO ClinVar Annotator: match by term: Gastrointestinal carcinoma ClinVar PMID:10617473 PMID:11053450 PMID:11298456 PMID:11390408 PMID:11461078 More... NCBI chr12:45,788,823...45,821,382
Ensembl chr12:45,788,827...45,821,286 		JBrowse link
G Eln elastin ISO ClinVar Annotator: match by term: Gastrointestinal carcinoma ClinVar PMID:25741868 PMID:28492532 NCBI chr12:21,968,544...22,011,929
Ensembl chr12:21,968,544...22,011,928 		JBrowse link
G Grb7 growth factor receptor bound protein 7 ISO mRNA:increased expression:stomach (human) RGD PMID:16849520 RGD:151347663 NCBI chr10:83,443,387...83,453,057
Ensembl chr10:83,444,004...83,453,052 		JBrowse link
G Nod2 nucleotide-binding oligomerization domain containing 2 ISO associated with Helicobacter Infections;DNA:SNP: :c.802C>T (human) RGD PMID:20230816 RGD:5508759 NCBI chr19:18,382,369...18,422,817
Ensembl chr19:18,382,439...18,417,177 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  disease 19050
    disease of cellular proliferation 7793
      cancer 5637
        cell type cancer 3843
          carcinoma 3282
            gastrointestinal carcinoma 4
              anal Paget's disease + 0
Path 2
Term Annotations click to browse term
  disease 19050
    disease of anatomical entity 18384
      gastrointestinal system disease 7174
        Digestive System Neoplasms 3856
          Gastrointestinal Neoplasms 3732
            gastrointestinal system cancer 2920
              gastrointestinal carcinoma 4
                anal Paget's disease + 0
paths to the root