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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.
Term:extranodal marginal zone lymphoma of mucosa-associated lymphoid tissue
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Accession:DOID:0050909 term browser browse the term
Definition:A marginal zone B-cell lymphoma that has_material_basis_in mucosal tissue involved in antibody production. (DO)
Synonyms:exact_synonym: LYMPHOMA, MUCOSA-ASSOCIATED LYMPHOID TYPE;   Lymphoma of Mucosa Associated Lymphoid Tissue;   MALT lymphoma;   MALT lymphoma of the dura;   mucosa associated lymphoid tissue lymphoma
 narrow_synonym: Breast Mucosa-Associated Lymphoid Tissue Lymphoma;   Small Intestinal Mucosa-Associated Lymphoid Tissue Lymphoma;   Thyroid Gland Mucosa-Associated Lymphoid Tissue Lymphoma
 primary_id: OMIM:137245
 xref: EFO:0000191;   EFO:1000146;   EFO:1000537;   EFO:1000591;   NCI:C3898

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extranodal marginal zone lymphoma of mucosa-associated lymphoid tissue term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl10 BCL10 immune signaling adaptor ISO ClinVar Annotator: match by term: MALT lymphoma OMIM
ClinVar		 PMID:9989495 PMID:10380920 PMID:10408400 NCBI chrNW_004936608:434,740...442,162
Ensembl chrNW_004936608:434,978...442,391 		JBrowse link
G Birc3 baculoviral IAP repeat containing 3 treatment ISO DNA:gene fusion: (human) RGD PMID:21465313 RGD:153305955 NCBI chrNW_004936551:5,544,047...5,556,550
Ensembl chrNW_004936551:5,544,065...5,556,555 		JBrowse link
G Cxcr4 C-X-C motif chemokine receptor 4 ISO protein:increased expression: mucosa-associated lymphoid tissue (human) RGD PMID:27544389 RGD:152023632 NCBI chrNW_004936469:39,794,613...39,798,448
Ensembl chrNW_004936469:39,794,584...39,798,459 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  disease 16465
    disease of anatomical entity 14116
      hematopoietic system disease 2989
        leukocyte disease 1162
          B-cell lymphoma 312
            marginal zone lymphoma 5
              extranodal marginal zone lymphoma of mucosa-associated lymphoid tissue 3
                Gastric Mucosa-Associated Lymphoid Tissue Lymphoma 0
Path 2
Term Annotations click to browse term
  disease 16465
    disease of cellular proliferation 6811
      cancer 4923
        organ system cancer 4705
          immune system cancer 589
            lymphatic system cancer 589
              lymphoma 500
                non-Hodgkin lymphoma 422
                  B-cell lymphoma 312
                    marginal zone lymphoma 5
                      extranodal marginal zone lymphoma of mucosa-associated lymphoid tissue 3
                        Gastric Mucosa-Associated Lymphoid Tissue Lymphoma 0
paths to the root