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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.
Term:salivary gland carcinoma
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Accession:DOID:0050904 term browser browse the term
Definition:A salivary gland cancer that has_material_basis_in epithelial cells. (DO)
Synonyms:narrow_synonym: Major Salivary Gland Carcinoma;   Minor Salivary Gland Adenocarcinoma;   Salivary Gland Adenosquamous Carcinoma;   Salivary Gland Basal Cell Adenocarcinoma;   Salivary Gland Large Cell Carcinoma;   salivary gland squamous cell carcinoma
 xref: EFO:1000344;   EFO:1000379;   EFO:1000514;   EFO:1000516;   EFO:1000517;   EFO:1001967


show annotations for term's descendants           Sort by:
salivary gland carcinoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KDR kinase insert domain receptor disease_progression ISO RGD PMID:26498950 RGD:126907998 NCBI chr 4:68,813,894...68,861,018
Ensembl chr 4:75,377,375...75,427,109 		JBrowse link
G PTGS1 prostaglandin-endoperoxide synthase 1 disease_progression ISO RGD PMID:26498950 RGD:126907998 NCBI chr 9:93,495,365...93,517,557
Ensembl chr 9:121,837,095...121,859,283 		JBrowse link
G RAD52 RAD52 homolog, DNA repair protein sexual_dimorphism ISO DNA:SNP:intron: (rs3748522) (human) RGD PMID:26035306 RGD:151361290 NCBI chr12:986,372...1,066,708
Ensembl chr12:946,825...985,668 		JBrowse link
G XRCC4 X-ray repair cross complementing 4 sexual_dimorphism ISO DNA:SNP:intron: (rs13180356) (human) RGD PMID:26035306 RGD:151361290 NCBI chr 5:31,927,463...32,202,394
Ensembl chr 5:32,246,320...32,521,490 		JBrowse link
salivary gland adenoid cystic carcinoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MTUS1 microtubule associated scaffold protein 1 disease_progression ISO RGD PMID:25885343 RGD:25330345 NCBI chr 8:16,863,307...17,020,684 JBrowse link
G XRCC4 X-ray repair cross complementing 4 susceptibility ISO DNA:SNP:intron: (rs13180356) (human) RGD PMID:26035306 RGD:151361290 NCBI chr 5:31,927,463...32,202,394
Ensembl chr 5:32,246,320...32,521,490 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  disease 17996
    disease of cellular proliferation 7240
      cancer 5233
        cell type cancer 3590
          carcinoma 3058
            salivary gland carcinoma 5
              mammary analogue secretory carcinoma 0
              salivary gland adenoid cystic carcinoma 2
              salivary gland mucinous adenocarcinoma 0
              salivary gland mucoepidermoid carcinoma 0
Path 2
Term Annotations click to browse term
  disease 17996
    Pathological Conditions, Signs and Symptoms 12035
      Signs and Symptoms 9967
        Neurologic Manifestations 9644
          sensory system disease 6626
            mouth disease 978
              salivary gland disease 132
                Salivary Gland Neoplasms 57
                  salivary gland cancer 6
                    salivary gland carcinoma 5
                      mammary analogue secretory carcinoma 0
                      salivary gland adenoid cystic carcinoma 2
                      salivary gland mucinous adenocarcinoma 0
                      salivary gland mucoepidermoid carcinoma 0
paths to the root