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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.

Term:respiratory system benign neoplasm
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Accession:DOID:0050621 term browser browse the term
Definition:An organ system benign neoplasm that is located_in the respiratory system which extends from the nasal sinuses to the diaphragm.
Synonyms:primary_id: RDO:9002406
For additional species annotation, visit the Alliance of Genome Resources.



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lung adenoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anapc2 anaphase promoting complex subunit 2 ISO mRNA:decreased expression:lung (human) RGD PMID:14647414 RGD:10047051 NCBI chr 3:8,086,434...8,098,182
Ensembl chr 3:8,086,462...8,098,178
JBrowse link
G Mir21 microRNA 21 ISO RNA:increased expression:lung: RGD PMID:20956945 RGD:41404697 NCBI chr10:71,405,257...71,405,348
Ensembl chr10:71,405,257...71,405,348
JBrowse link
paranasal sinus benign neoplasm term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anxa1 annexin A1 ISO RGD PMID:20970165 RGD:7421559 NCBI chr 1:217,861,175...217,877,205
Ensembl chr 1:217,861,175...217,877,343
JBrowse link
G Anxa2 annexin A2 disease_progression ISO RGD PMID:20970165 RGD:7421559 NCBI chr 8:70,105,268...70,141,663
Ensembl chr 8:70,105,253...70,141,658
JBrowse link
G Tp53 tumor protein p53 treatment ISO DNA:mutations:cds: RGD PMID:22575263 PMID:23369851 RGD:8547763, RGD:8547764 NCBI chr10:54,300,070...54,311,525
Ensembl chr10:54,300,048...54,311,524
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  disease 17286
    disease of cellular proliferation 7054
      benign neoplasm 1946
        organ system benign neoplasm 1091
          respiratory system benign neoplasm 5
            benign pleural mesothelioma 0
            bronchial benign neoplasm + 0
            laryngeal benign neoplasm + 0
            lung benign neoplasm + 2
            nasal cavity benign neoplasm + 0
            nasal vestibule papilloma 0
            neurilemmoma of the pleura 0
            paranasal sinus benign neoplasm + 3
            pleural lipoma 0
            subglottic angioma 0
            trachea leiomyoma + 0
Path 2
Term Annotations click to browse term
  disease 17286
    disease of anatomical entity 16621
      respiratory system disease 2907
        thoracic disease 1842
          Thoracic Neoplasms 1305
            Respiratory Tract Neoplasms 857
              respiratory system benign neoplasm 5
                benign pleural mesothelioma 0
                bronchial benign neoplasm + 0
                laryngeal benign neoplasm + 0
                lung benign neoplasm + 2
                nasal cavity benign neoplasm + 0
                nasal vestibule papilloma 0
                neurilemmoma of the pleura 0
                paranasal sinus benign neoplasm + 3
                pleural lipoma 0
                subglottic angioma 0
                trachea leiomyoma + 0
paths to the root