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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.

Term:intestinal schistosomiasis
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Accession:DOID:0050597 term browser browse the term
Definition:A schistosomiasis that involves parasitic infection of the intestine caused by Schistosoma mansoni, Schistosoma intercalatum or Schistosomiasis japonicum. The symptoms include fever, cough, abdominal pain, diarrhea, hepatosplenomegaly, colonic polyposis with bloody diarrhea and eosinophilia. (DO)
Synonyms:exact_synonym: intestinal schistosomiases
 xref: ICD10CM:B65.1;   ICD10CM:B65.2;   ICD9CM:120.1;   ICD9CM:120.2;   NCI:C35364;   ORDO:1247
For additional species annotation, visit the Alliance of Genome Resources.


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Schistosomiasis Japonica term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Il18 interleukin 18 treatment ISO RGD PMID:19467215 RGD:14696662 NCBI chr 8:55,009,666...55,016,286
Ensembl chr 8:54,993,859...55,016,299
JBrowse link
G Il33 interleukin 33 treatment
severity
ISO protein:increased expression:serum RGD PMID:22590860, PMID:25944738, PMID:25944738 RGD:39939027, RGD:40400890, RGD:40400890 NCBI chr 1:248,112,611...248,147,030
Ensembl chr 1:248,132,090...248,147,029
JBrowse link
G Mir223 microRNA 223 treatment ISO RNA:increased expression:plasma: RGD PMID:24330517, PMID:24330517 RGD:21408589, RGD:21408589 NCBI chr  X:65,367,812...65,367,921
Ensembl chr  X:65,367,812...65,367,921
JBrowse link
G Pdcd1 programmed cell death 1 severity ISO protein:increased expression:CD4 T cell RGD PMID:27792733, PMID:27792733, PMID:27792733 RGD:40818413, RGD:40818413, RGD:40818413 NCBI chr 9:101,305,742...101,319,937
Ensembl chr 9:101,307,764...101,319,845
JBrowse link
G RT1-Ba RT1 class II, locus Ba susceptibility ISO DNA:polymorphisms: : RGD PMID:16042197 RGD:14398841 NCBI chr20:4,066,133...4,070,726
Ensembl chr20:4,066,132...4,070,721
JBrowse link
Schistosomiasis Mansoni term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 ISO mRNA:increased expression:macrophage RGD PMID:22927819 RGD:14367882 NCBI chr 8:77,640,234...77,719,488
Ensembl chr 8:77,640,222...77,719,489
JBrowse link
G Cd40 CD40 molecule treatment ISO RGD PMID:10623823 RGD:11520789 NCBI chr 3:161,519,789...161,534,943
Ensembl chr 3:161,519,743...161,534,704
JBrowse link
G Cd86 CD86 molecule ISO protein:increased expression:peripheral blood, eosinophil (human) RGD PMID:17308795 RGD:11354987 NCBI chr11:67,060,305...67,117,990
Ensembl chr11:67,082,193...67,118,795
JBrowse link
G Ihh Indian hedgehog signaling molecule ISO RGD PMID:23121638 RGD:12910981 NCBI chr 9:82,208,223...82,214,440
Ensembl chr 9:82,208,223...82,214,440
JBrowse link
G Il13 interleukin 13 treatment IMP RGD PMID:10903803 RGD:8549615 NCBI chr10:38,982,909...38,985,466
Ensembl chr10:38,982,909...38,985,466
JBrowse link
G Nos2 nitric oxide synthase 2 ISO CTD Direct Evidence: therapeutic CTD PMID:9673227 NCBI chr10:66,188,290...66,221,621
Ensembl chr10:66,189,786...66,313,190
JBrowse link
G Sod1 superoxide dismutase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16564582 NCBI chr11:30,363,282...30,368,858
Ensembl chr11:30,363,280...30,368,862
JBrowse link
G Tlr9 toll-like receptor 9 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19797157 NCBI chr 8:114,916,122...114,920,171
Ensembl chr 8:114,916,122...114,920,171
JBrowse link
G Tslp thymic stromal lymphopoietin treatment ISO RGD PMID:22882457 RGD:38596354 NCBI chr18:25,613,601...25,618,066
Ensembl chr18:25,613,831...25,617,361
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  disease 16023
    disease of anatomical entity 15278
      gastrointestinal system disease 4632
        intestinal disease 1514
          intestinal schistosomiasis 15
            Schistosomiasis Japonica 5
            Schistosomiasis Mansoni + 10
Path 2
Term Annotations click to browse term
  disease 16023
    disease by infectious agent 1774
      parasitic infectious disease 240
        parasitic helminthiasis infectious disease 72
          fasciolopsiasis 35
            schistosomiasis 29
              intestinal schistosomiasis 15
                Schistosomiasis Japonica 5
                Schistosomiasis Mansoni + 10
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.