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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.

Term:inflammatory bowel disease
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Accession:DOID:0050589 term browser browse the term
Definition:An intestinal disease characterized by inflammation located in all parts of digestive tract. (DO)
Synonyms:exact_synonym: inflammatory bowel diseases
 narrow_synonym: CROHN DISEASE-ASSOCIATED GROWTH FAILURE, SUSCEPTIBILITY TO;   VERY EARLY ONSET INFLAMMATORY BOWEL DISEASE;   regional enteritis;   ulcerative colitis
 related_synonym: Inflammatory bowel disease 1, susceptibility to
 primary_id: MESH:D015212
 xref: NCI:C3138;   OMIM:PS266600;   OMIM:PS614328
For additional species annotation, visit the Alliance of Genome Resources.


show annotations for term's descendants           Sort by:
 
inflammatory bowel disease term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADIPOQ adiponectin, C1Q and collagen domain containing IEP protein:decreased expression:serum RGD PMID:18849144 RGD:5686819 NCBI chr 3:186,842,710...186,858,463
Ensembl chr 3:186,842,704...186,858,463
JBrowse link
G AGER advanced glycosylation end-product specific receptor IEP RGD PMID:21939913 RGD:6767556 NCBI chr 6:32,180,969...32,184,380
Ensembl chr 6:32,180,968...32,184,322
JBrowse link
G AGT angiotensinogen IAGP DNA:polymorphism: :p.M235T (human) RGD PMID:20717043 RGD:11039049 NCBI chr 1:230,702,523...230,745,583
Ensembl chr 1:230,690,776...230,745,576
JBrowse link
G ALPI alkaline phosphatase, intestinal IAGP DNA:mutations:cds: RGD PMID:29567797 RGD:14367877 NCBI chr 2:232,456,153...232,460,753
Ensembl chr 2:232,456,125...232,460,753
JBrowse link
G ANG angiogenin IEP protein:increased expression:serum RGD PMID:20629092 RGD:6892712 NCBI chr14:20,684,177...20,694,186
Ensembl chr14:20,684,177...20,698,971
JBrowse link
G ANO6 anoctamin 6 IAGP associated with Spondylitis, Ankylosing;DNA:SNP: :rs17095830(human) RGD PMID:23308121 RGD:9684849 NCBI chr12:45,216,033...45,440,404
Ensembl chr12:45,215,987...45,482,280
JBrowse link
G APC APC regulator of WNT signaling pathway EXP CTD Direct Evidence: marker/mechanism CTD PMID:18716850 NCBI chr 5:112,707,498...112,846,239
Ensembl chr 5:112,707,498...112,846,239
JBrowse link
G APC2 APC regulator of WNT signaling pathway 2 EXP CTD Direct Evidence: marker/mechanism CTD PMID:18716850 NCBI chr19:1,446,268...1,473,244
Ensembl chr19:1,446,302...1,473,244
JBrowse link
G ATG16L1 autophagy related 16 like 1 EXP CTD Direct Evidence: marker/mechanism CTD PMID:26192919 NCBI chr 2:233,251,647...233,295,674
Ensembl chr 2:233,210,051...233,295,674
JBrowse link
G B2M beta-2-microglobulin IMP RGD PMID:20015205 RGD:6482693 NCBI chr15:44,711,492...44,718,145
Ensembl chr15:44,711,487...44,718,851
JBrowse link
G CARD9 caspase recruitment domain family member 9 EXP CTD Direct Evidence: marker/mechanism CTD PMID:21983784 NCBI chr 9:136,363,956...136,373,669
Ensembl chr 9:136,361,903...136,373,681
JBrowse link
G CD40LG CD40 ligand ISS MouseDO NCBI chr  X:136,648,158...136,660,390
Ensembl chr  X:136,648,158...136,660,390
JBrowse link
G CDH2 cadherin 2 ISO RGD PMID:7502046 RGD:734737 NCBI chr18:27,932,878...28,177,130
Ensembl chr18:27,932,879...28,177,946
JBrowse link
G CNR2 cannabinoid receptor 2 EXP CTD Direct Evidence: therapeutic CTD PMID:30102254 NCBI chr 1:23,870,515...23,913,362
Ensembl chr 1:23,870,515...23,913,362
JBrowse link
G CRP C-reactive protein IDA RGD PMID:22483567 RGD:6482301 NCBI chr 1:159,712,289...159,714,589
Ensembl chr 1:159,712,289...159,714,589
JBrowse link
G CUL2 cullin 2 EXP CTD Direct Evidence: marker/mechanism CTD PMID:21983784 NCBI chr10:35,008,551...35,126,899
Ensembl chr10:35,008,551...35,090,642
JBrowse link
G CYBA cytochrome b-245 alpha chain IAGP ClinVar Annotator: match by term: Very early onset inflammatory bowel disease ClinVar PMID:3368442 PMID:9445163 PMID:10440830 PMID:19388116 PMID:25741868 More... NCBI chr16:88,643,289...88,651,079
Ensembl chr16:88,643,289...88,651,054
JBrowse link
G DEFA5 defensin alpha 5 EXP CTD Direct Evidence: marker/mechanism CTD PMID:18394979 NCBI chr 8:7,055,304...7,056,739
Ensembl chr 8:7,055,304...7,056,739
JBrowse link
G ESR2 estrogen receptor 2 ISO RGD PMID:14500559 RGD:5509042 NCBI chr14:64,226,707...64,338,631
Ensembl chr14:64,084,232...64,338,112
JBrowse link
G FGF23 fibroblast growth factor 23 disease_progression IEP protein:increased expression:serum: RGD PMID:22551310 RGD:10044237 NCBI chr12:4,368,227...4,379,712
Ensembl chr12:4,368,227...4,379,712
JBrowse link
G GSTM1 glutathione S-transferase mu 1 IAGP DNA:deletion: : RGD PMID:21243434 RGD:5490537 NCBI chr 1:109,687,817...109,693,745
Ensembl chr 1:109,687,814...109,709,039
JBrowse link
G GSTT1 glutathione S-transferase theta 1 IAGP DNA:deletion: : RGD PMID:21243434 RGD:5490537
G HP haptoglobin ISO RGD PMID:16775491 RGD:5147444 NCBI chr16:72,054,505...72,061,055
Ensembl chr16:72,054,505...72,061,055
JBrowse link
G HPGD 15-hydroxyprostaglandin dehydrogenase IEP protein, mRNA:increased expression: colonic mucosa: inflamed tissue only RGD PMID:16195422 RGD:5688766 NCBI chr 4:174,490,175...174,522,893
Ensembl chr 4:174,490,175...174,523,154
JBrowse link
G HSPA5 heat shock protein family A (Hsp70) member 5 IEP protein:increased expression RGD PMID:21864296 RGD:5685671 NCBI chr 9:125,234,853...125,241,343
Ensembl chr 9:125,234,853...125,241,382
JBrowse link
G HSPA8 heat shock protein family A (Hsp70) member 8 ISO RGD PMID:21135124 RGD:6218980 NCBI chr11:123,057,489...123,062,366
Ensembl chr11:123,057,489...123,063,230
JBrowse link
G ICAM1 intercellular adhesion molecule 1 IAGP
EXP
CTD Direct Evidence: marker/mechanism CTD PMID:28067908 PMID:15638228 RGD:1625756 NCBI chr19:10,271,120...10,286,615
Ensembl chr19:10,271,093...10,286,615
JBrowse link
G IFNG interferon gamma treatment ISO RGD PMID:31062617 RGD:14975125 NCBI chr12:68,154,768...68,159,740
Ensembl chr12:68,154,768...68,159,740
JBrowse link
G IGF2 insulin like growth factor 2 disease_progression ISO
IEP
protein:increased expression:serum RGD PMID:20683203 PMID:12548059 RGD:5509948, RGD:5509968 NCBI chr11:2,129,117...2,149,566
Ensembl chr11:2,129,112...2,141,238
JBrowse link
G IGFBP3 insulin like growth factor binding protein 3 IAGP RGD PMID:15844718 RGD:1626117 NCBI chr 7:45,912,245...45,921,272
Ensembl chr 7:45,912,245...45,921,874
JBrowse link
G IKBKB inhibitor of nuclear factor kappa B kinase subunit beta treatment ISO RGD PMID:22018461 RGD:7495770 NCBI chr 8:42,270,727...42,332,460
Ensembl chr 8:42,271,302...42,332,460
JBrowse link
G IL10 interleukin 10 no_association
treatment
ISO
IAGP
EXP
ClinVar Annotator: match by term: Inflammatory bowel disease
DNA:SNP: :rs1800896 (human)
DNA:SNP: :rs3024505 (human)
CTD Direct Evidence: marker/mechanism
ClinVar
CTD
PMID:11121048 PMID:14657422 PMID:14657427 PMID:23291587 PMID:25741868 More... RGD:7364854, RGD:11534627, RGD:11534627, RGD:14975125 NCBI chr 1:206,767,602...206,772,494
Ensembl chr 1:206,767,602...206,774,541
JBrowse link
G IL10RA interleukin 10 receptor subunit alpha IAGP ClinVar Annotator: match by term: Inflammatory bowel disease ClinVar NCBI chr11:117,986,394...118,003,037
Ensembl chr11:117,986,370...118,003,037
JBrowse link
G IL10RB interleukin 10 receptor subunit beta IAGP ClinVar Annotator: match by term: Inflammatory bowel disease ClinVar NCBI chr21:33,266,367...33,297,221
Ensembl chr21:33,266,367...33,310,187
JBrowse link
G IL18RAP interleukin 18 receptor accessory protein EXP CTD Direct Evidence: marker/mechanism CTD PMID:21983784 NCBI chr 2:102,418,550...102,452,568
Ensembl chr 2:102,418,689...102,452,565
JBrowse link
G IL19 interleukin 19 IAGP ClinVar Annotator: match by term: Inflammatory bowel disease ClinVar PMID:11121048 PMID:14657422 PMID:14657427 PMID:25741868 PMID:28492532 NCBI chr 1:206,770,773...206,842,981
Ensembl chr 1:206,770,764...206,842,979
JBrowse link
G IL1RN interleukin 1 receptor antagonist treatment IMP RGD PMID:12184521 RGD:10450573 NCBI chr 2:113,099,365...113,134,016
Ensembl chr 2:113,107,214...113,134,016
JBrowse link
G IL2 interleukin 2 ISS MouseDO NCBI chr 4:122,451,470...122,456,725
Ensembl chr 4:122,451,470...122,456,725
JBrowse link
G IL21R interleukin 21 receptor IEP protein:increased expression:gut mucosa,leukocytes, mononuclear RGD PMID:19322899 RGD:6892935 NCBI chr16:27,402,162...27,452,043
Ensembl chr16:27,402,174...27,452,042
JBrowse link
G IL23R interleukin 23 receptor EXP CTD Direct Evidence: marker/mechanism CTD PMID:21983784 PMID:23291587 PMID:26192919 NCBI chr 1:67,138,639...67,259,979
Ensembl chr 1:67,138,907...67,259,979
JBrowse link
G IL2RA interleukin 2 receptor subunit alpha ISS MouseDO NCBI chr10:6,010,689...6,062,367
Ensembl chr10:6,010,689...6,062,370
JBrowse link
G IL33 interleukin 33 severity IDA RGD PMID:24491821 RGD:39938952 NCBI chr 9:6,214,591...6,257,983
Ensembl chr 9:6,215,786...6,257,983
JBrowse link
G IL37 interleukin 37 IAGP ClinVar Annotator: match by term: Inflammatory bowel disease ClinVar PMID:33674380 NCBI chr 2:112,911,165...112,918,882
Ensembl chr 2:112,911,165...112,918,882
JBrowse link
G IL5 interleukin 5 susceptibility ISO RGD PMID:22018693 RGD:5687148 NCBI chr 5:132,539,194...132,556,864
Ensembl chr 5:132,541,445...132,556,838
JBrowse link
G IL6 interleukin 6 IAGP
EXP
ClinVar Annotator: match by term: Crohn disease-associated growth failure, susceptibility to
CTD Direct Evidence: marker/mechanism
ClinVar
CTD
PMID:9769329 PMID:10720087 PMID:11001912 PMID:11889177 PMID:12519862 More... NCBI chr 7:22,725,889...22,732,002
Ensembl chr 7:22,725,884...22,732,002
JBrowse link
G IL6-AS1 IL6 antisense RNA 1 IAGP ClinVar Annotator: match by term: Crohn disease-associated growth failure, susceptibility to ClinVar PMID:9769329 PMID:10720087 PMID:11001912 PMID:11889177 PMID:12519862 More... NCBI chr 7:22,725,395...22,727,620
Ensembl chr 7:22,725,395...22,727,620
JBrowse link
G INAVA innate immunity activator EXP CTD Direct Evidence: marker/mechanism CTD PMID:21983784 NCBI chr 1:200,891,074...200,915,742
Ensembl chr 1:200,891,048...200,915,742
JBrowse link
G IRGM immunity related GTPase M EXP CTD Direct Evidence: marker/mechanism CTD PMID:26192919 NCBI chr 5:150,846,521...150,902,402
Ensembl chr 5:150,846,523...150,900,736
JBrowse link
G ITGA4 integrin subunit alpha 4 EXP CTD Direct Evidence: marker/mechanism CTD PMID:28067908 NCBI chr 2:181,457,205...181,538,940
Ensembl chr 2:181,457,202...181,538,940
JBrowse link
G ITGAL integrin subunit alpha L EXP CTD Direct Evidence: marker/mechanism CTD PMID:28067908 NCBI chr16:30,472,683...30,523,185
Ensembl chr16:30,472,658...30,523,567
JBrowse link
G ITGB8 integrin subunit beta 8 EXP CTD Direct Evidence: marker/mechanism CTD PMID:28067908 NCBI chr 7:20,329,819...20,415,754
Ensembl chr 7:20,330,702...20,415,754
JBrowse link
G KLKB1 kallikrein B1 ISO RGD PMID:8625762 RGD:7327139 NCBI chr 4:186,215,714...186,258,477
Ensembl chr 4:186,208,979...186,258,471
JBrowse link
G KRT8 keratin 8 IAGP ClinVar Annotator: match by term: Inflammatory bowel disease ClinVar PMID:15090596 PMID:25741868 NCBI chr12:52,897,191...52,949,860
Ensembl chr12:52,897,187...52,949,954
JBrowse link
G LTF lactotransferrin IEP RGD PMID:9791051 RGD:7243943 NCBI chr 3:46,435,645...46,485,234
Ensembl chr 3:46,435,645...46,485,234
JBrowse link
G MTHFR methylenetetrahydrofolate reductase IAGP DNA:SNP: :1298A>C (human) RGD PMID:17111197 RGD:10449410 NCBI chr 1:11,785,723...11,806,103
Ensembl chr 1:11,785,723...11,806,455
JBrowse link
G MUC19 mucin 19, oligomeric EXP CTD Direct Evidence: marker/mechanism CTD PMID:21983784 NCBI chr12:40,393,394...40,570,757
Ensembl chr12:40,393,395...40,570,832
JBrowse link
G MUC2 mucin 2, oligomeric mucus/gel-forming ISS MouseDO NCBI chr11:1,074,875...1,110,508
Ensembl chr11:1,074,875...1,110,511
JBrowse link
G NFIL3 nuclear factor, interleukin 3 regulated ISS MouseDO NCBI chr 9:91,409,045...91,425,063
Ensembl chr 9:91,409,045...91,423,832
JBrowse link
G NOD2 nucleotide binding oligomerization domain containing 2 EXP
IAGP
CTD Direct Evidence: marker/mechanism
ClinVar Annotator: match by term: REGIONAL ENTERITIS
CTD
ClinVar
PMID:12577202 PMID:14765395 PMID:15024686 PMID:19467619 PMID:21914217 More... NCBI chr16:50,693,587...50,733,077
Ensembl chr16:50,693,588...50,734,041
JBrowse link
G NOS2 nitric oxide synthase 2 ISO protein:increased expression:colon (rat) RGD PMID:21958875 RGD:5508753 NCBI chr17:27,756,766...27,800,529
Ensembl chr17:27,756,766...27,800,529
JBrowse link
G NOX1 NADPH oxidase 1 IAGP ClinVar Annotator: match by term: Very early onset inflammatory bowel disease ClinVar PMID:28492532 PMID:30709874 NCBI chr  X:100,843,324...100,874,359
Ensembl chr  X:100,843,324...100,874,359
JBrowse link
G NPSR1 neuropeptide S receptor 1 IAGP RGD PMID:17854592 RGD:4891931 NCBI chr 7:34,658,218...34,878,332
Ensembl chr 7:34,658,218...34,878,332
JBrowse link
G PDGFB platelet derived growth factor subunit B IEP RGD PMID:11780721 RGD:6482691 NCBI chr22:39,223,359...39,244,982
Ensembl chr22:39,223,359...39,244,982
JBrowse link
G PLCG2 phospholipase C gamma 2 EXP CTD Direct Evidence: marker/mechanism CTD PMID:28067908 NCBI chr16:81,779,291...81,962,685
Ensembl chr16:81,739,097...81,962,685
JBrowse link
G POMC proopiomelanocortin ISO protein:alternative form:large intestine epithelium: alphaMSH RGD PMID:9145424 PMID:21741932 RGD:5508804, RGD:5508805 NCBI chr 2:25,160,860...25,168,580
Ensembl chr 2:25,160,853...25,168,903
JBrowse link
G PTGS2 prostaglandin-endoperoxide synthase 2 EXP CTD Direct Evidence: marker/mechanism CTD PMID:11820457 NCBI chr 1:186,671,791...186,680,423
Ensembl chr 1:186,671,791...186,680,922
JBrowse link
G PTPN22 protein tyrosine phosphatase non-receptor type 22 EXP CTD Direct Evidence: marker/mechanism CTD PMID:21983784 NCBI chr 1:113,813,811...113,871,761
Ensembl chr 1:113,813,811...113,871,753
JBrowse link
G RASSF1 Ras association domain family member 1 EXP CTD Direct Evidence: marker/mechanism CTD PMID:24146755 NCBI chr 3:50,329,786...50,340,836
Ensembl chr 3:50,329,782...50,340,980
JBrowse link
G RUNX3 RUNX family transcription factor 3 ISS MouseDO NCBI chr 1:24,899,511...24,965,158
Ensembl chr 1:24,899,511...24,965,121
JBrowse link
G SFRP1 secreted frizzled related protein 1 EXP CTD Direct Evidence: marker/mechanism CTD PMID:18716850 NCBI chr 8:41,261,962...41,309,473
Ensembl chr 8:41,261,962...41,309,473
JBrowse link
G SFRP2 secreted frizzled related protein 2 EXP CTD Direct Evidence: marker/mechanism CTD PMID:18716850 NCBI chr 4:153,780,591...153,789,083
Ensembl chr 4:153,780,591...153,789,083
JBrowse link
G SLAMF8 SLAM family member 8 EXP CTD Direct Evidence: marker/mechanism CTD PMID:28067908 NCBI chr 1:159,826,689...159,837,497
Ensembl chr 1:159,826,811...159,837,492
JBrowse link
G SLC11A1 solute carrier family 11 member 1 IAGP
EXP
DNA:polymorphisms: :1730G>A (human)
CTD Direct Evidence: marker/mechanism
DNA:point mutation:promoter:-237C>T (human)
CTD PMID:16597321 PMID:21128323 PMID:16059695 RGD:5684929, RGD:5684952 NCBI chr 2:218,381,766...218,396,894
Ensembl chr 2:218,382,029...218,396,894
JBrowse link
G SLC6A14 solute carrier family 6 member 14 ISO protein:decreased expression:epithelial cell, colon RGD PMID:17065219 RGD:1625272 NCBI chr  X:116,436,606...116,461,458
Ensembl chr  X:116,436,606...116,461,458
JBrowse link
G STAT3 signal transducer and activator of transcription 3 ISS MouseDO NCBI chr17:42,313,324...42,388,502
Ensembl chr17:42,313,324...42,388,540
JBrowse link
G TGFB1 transforming growth factor beta 1 treatment EXP
IDA
CTD Direct Evidence: marker/mechanism CTD PMID:29483653 PMID:28891831 RGD:14995457 NCBI chr19:41,330,323...41,353,922
Ensembl chr19:41,301,587...41,353,922
JBrowse link
G THEMIS thymocyte selection associated ISO DNA:frameshift mutation: RGD PMID:22275874 RGD:38599149 NCBI chr 6:127,708,194...127,918,595
Ensembl chr 6:127,708,072...127,918,631
JBrowse link
G TNF tumor necrosis factor treatment ISO
EXP
CTD Direct Evidence: marker/mechanism CTD PMID:15086448 PMID:27793764 PMID:12184521 RGD:10450573 NCBI chr 6:31,575,565...31,578,336
Ensembl chr 6:31,575,565...31,578,336
JBrowse link
G TNFSF15 TNF superfamily member 15 EXP CTD Direct Evidence: marker/mechanism CTD PMID:26192919 NCBI chr 9:114,784,635...114,806,039
Ensembl chr 9:114,784,652...114,806,039
JBrowse link
G TPMT thiopurine S-methyltransferase treatment IEP RGD PMID:17026564 RGD:11038726 NCBI chr 6:18,128,311...18,155,169
Ensembl chr 6:18,128,311...18,155,077
JBrowse link
G VEGFA vascular endothelial growth factor A disease_progression IEP protein:increased expression:serum,colon: RGD PMID:23642997 RGD:11079180 NCBI chr 6:43,770,209...43,786,487
Ensembl chr 6:43,770,184...43,786,487
JBrowse link
G VNN1 vanin 1 EXP CTD Direct Evidence: therapeutic CTD PMID:17145956 NCBI chr 6:132,680,849...132,714,055
Ensembl chr 6:132,680,849...132,714,055
JBrowse link
G XBP1 X-box binding protein 1 ISS MouseDO NCBI chr22:28,794,560...28,800,569
Ensembl chr22:28,794,555...28,800,597
JBrowse link
chemical colitis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACE angiotensin I converting enzyme ISO protein:increased expression:small intestine, large intestine:extracellular space (mouse) RGD PMID:26401072 RGD:11555935 NCBI chr17:63,477,061...63,498,373
Ensembl chr17:63,477,061...63,498,380
JBrowse link
G ACE2 angiotensin converting enzyme 2 severity ISO Ace2 knockout
Ace2 inhibitor
RGD PMID:22837003 PMID:19517214 RGD:40818307, RGD:40818410 NCBI chr  X:15,518,197...15,607,211
Ensembl chr  X:15,494,566...15,607,236
JBrowse link
G CASP3 caspase 3 treatment ISO RGD PMID:28740344 RGD:13782278 NCBI chr 4:184,627,696...184,649,447
Ensembl chr 4:184,627,696...184,649,509
JBrowse link
G CASP7 caspase 7 treatment ISO RGD PMID:28740344 RGD:13782278 NCBI chr10:113,679,194...113,730,909
Ensembl chr10:113,679,162...113,730,907
JBrowse link
G SERPINA1 serpin family A member 1 treatment IDA RGD PMID:23835442 RGD:14695050 NCBI chr14:94,376,747...94,390,654
Ensembl chr14:94,376,747...94,390,693
JBrowse link
Clostridium difficile colitis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IL23A interleukin 23 subunit alpha severity ISO RGD PMID:26455347 RGD:11097134 NCBI chr12:56,334,159...56,340,410
Ensembl chr12:56,334,174...56,340,410
JBrowse link
G IL33 interleukin 33 treatment
severity
ISO RGD PMID:32156806 PMID:32156806 RGD:40400894, RGD:40400894 NCBI chr 9:6,214,591...6,257,983
Ensembl chr 9:6,215,786...6,257,983
JBrowse link
colitis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADAM17 ADAM metallopeptidase domain 17 EXP CTD Direct Evidence: marker/mechanism CTD PMID:24548422 NCBI chr 2:9,488,486...9,555,830
Ensembl chr 2:9,488,486...9,556,732
JBrowse link
G ADIPOQ adiponectin, C1Q and collagen domain containing ISO RGD PMID:17604368 PMID:21479819 RGD:5686754, RGD:5686898 NCBI chr 3:186,842,710...186,858,463
Ensembl chr 3:186,842,704...186,858,463
JBrowse link
G ADK adenosine kinase ISO RGD PMID:11123368 RGD:6482664 NCBI chr10:74,151,185...74,709,300
Ensembl chr10:74,151,202...74,709,963
JBrowse link
G ADRB3 adrenoceptor beta 3 ISO mRNA:decreased expression:distal colon, mucosa (rat) RGD PMID:18492028 RGD:5684890 NCBI chr 8:37,962,990...37,966,599
Ensembl chr 8:37,962,990...37,966,599
JBrowse link
G AHR aryl hydrocarbon receptor EXP CTD Direct Evidence: therapeutic CTD PMID:27783946 NCBI chr 7:17,298,652...17,346,147
Ensembl chr 7:16,916,359...17,346,152
JBrowse link
G ALOX5 arachidonate 5-lipoxygenase EXP CTD Direct Evidence: marker/mechanism CTD PMID:15821759 NCBI chr10:45,374,209...45,446,121
Ensembl chr10:45,374,176...45,446,119
JBrowse link
G ANXA1 annexin A1 ISO protein:increased expression:colon, neutrophil RGD PMID:10489933 RGD:2306920 NCBI chr 9:73,151,865...73,170,393
Ensembl chr 9:73,151,865...73,170,393
JBrowse link
G APLN apelin ISO RGD PMID:17391779 RGD:1626177 NCBI chr  X:129,645,259...129,654,956
Ensembl chr  X:129,645,259...129,654,956
JBrowse link
G APOA4 apolipoprotein A4 IDA human protein in mouse model RGD PMID:15254593 RGD:5685667 NCBI chr11:116,820,700...116,823,304
Ensembl chr11:116,820,700...116,823,304
JBrowse link
G AQP7 aquaporin 7 IEP associated with Infection;mRNA, protein:decreased expression:colon RGD PMID:15338270 RGD:1626292 NCBI chr 9:33,383,135...33,402,677
Ensembl chr 9:33,383,179...33,402,682
JBrowse link
G ARG1 arginase 1 severity IEP RGD PMID:28423665 RGD:39939041 NCBI chr 6:131,573,226...131,584,329
Ensembl chr 6:131,470,832...131,584,332
JBrowse link
G ARRB1 arrestin beta 1 ISO protein:increased expression:colon (rat) RGD PMID:21066892 RGD:5509893 NCBI chr11:75,260,122...75,351,662
Ensembl chr11:75,260,122...75,351,705
JBrowse link
G ATP5F1D ATP synthase F1 subunit delta treatment ISO RGD PMID:23840258 RGD:13792680 NCBI chr19:1,241,751...1,244,825
Ensembl chr19:1,241,746...1,244,825
JBrowse link
G BDNF brain derived neurotrophic factor ISO protein:increased expression:dorsal root ganglion: RGD PMID:19932037 RGD:8657331 NCBI chr11:27,654,893...27,722,030
Ensembl chr11:27,654,893...27,722,058
JBrowse link
G BMP6 bone morphogenetic protein 6 ISO RGD PMID:22361727 RGD:7242194 NCBI chr 6:7,726,099...7,881,728
Ensembl chr 6:7,726,099...7,881,728
JBrowse link
G BTK Bruton tyrosine kinase ameliorates ISO Associated with candidiasis RGD PMID:25379804 RGD:124713568 NCBI chr  X:101,349,450...101,390,796
Ensembl chr  X:101,349,447...101,390,796
JBrowse link
G CAT catalase ISO RGD PMID:21463646 RGD:5130869 NCBI chr11:34,438,934...34,472,060
Ensembl chr11:34,438,934...34,472,060
JBrowse link
G CCKBR cholecystokinin B receptor ISO RGD PMID:15102523 RGD:2311333 NCBI chr11:6,259,838...6,272,127
Ensembl chr11:6,259,806...6,272,127
JBrowse link
G CCL2 C-C motif chemokine ligand 2 ISO RGD PMID:18690297 RGD:2307009 NCBI chr17:34,255,285...34,257,203
Ensembl chr17:34,255,218...34,257,203
JBrowse link
G CCR1 C-C motif chemokine receptor 1 ISO RGD PMID:16399111 RGD:2307162 NCBI chr 3:46,201,711...46,208,313
Ensembl chr 3:46,201,711...46,208,313
JBrowse link
G CD36 CD36 molecule ISO RGD PMID:19117124 RGD:6893503 NCBI chr 7:80,602,207...80,679,277
Ensembl chr 7:80,369,575...80,679,277
JBrowse link
G CD40 CD40 molecule ISO RGD PMID:15591506 RGD:5508169 NCBI chr20:46,118,242...46,129,858
Ensembl chr20:46,118,278...46,129,863
JBrowse link
G CHEK2 checkpoint kinase 2 IAGP ClinVar Annotator: match by term: Colitis ClinVar PMID:10617473 PMID:11053450 PMID:11479205 PMID:11719428 PMID:11967536 More... NCBI chr22:28,687,743...28,741,866
Ensembl chr22:28,687,743...28,742,422
JBrowse link
G CHUK component of inhibitor of nuclear factor kappa B kinase complex treatment ISO RGD PMID:17543437 RGD:2298659 NCBI chr10:100,188,300...100,229,610
Ensembl chr10:100,188,300...100,229,596
JBrowse link
G CIITA class II major histocompatibility complex transactivator severity ISO
IAGP
protein:increased expression:T cells:constitutive expression of transgene increases severity (mouse)
ClinVar Annotator: match by term: Colitis
ClinVar PMID:25741868 PMID:28492532 PMID:17043423 RGD:5491188 NCBI chr16:10,866,208...10,941,562
Ensembl chr16:10,866,222...10,943,021
JBrowse link
G CRHR2 corticotropin releasing hormone receptor 2 ISO mRNA, protein:decreased expression:intestine, myenteric nerve plexus RGD PMID:17586086 PMID:21330446 RGD:5131259, RGD:5490987 NCBI chr 7:30,649,406...30,700,103
Ensembl chr 7:30,651,942...30,700,129
JBrowse link
G CTSB cathepsin B ISO protein:increased activity:cecum, colon, spinal cord RGD PMID:21802389 RGD:5686873 NCBI chr 8:11,842,524...11,868,087
Ensembl chr 8:11,842,524...11,869,533
JBrowse link
G CTSL cathepsin L ISO protein:increased activity:cecum, colon, spinal cord RGD PMID:21802389 RGD:5686873 NCBI chr 9:87,726,119...87,731,469
Ensembl chr 9:87,724,051...87,731,469
JBrowse link
G CTSS cathepsin S ISO protein:increased activity:cecum, colon, spinal cord RGD PMID:21802389 RGD:5686873 NCBI chr 1:150,730,188...150,765,778
Ensembl chr 1:150,730,079...150,765,957
JBrowse link
G CXCL8 C-X-C motif chemokine ligand 8 ISO associated with Helicobacter Infections;mRNA:decreased expression:colon (mouse, Helicobacter hepaticus) RGD PMID:17242461 RGD:38549339 NCBI chr 4:73,740,569...73,743,716
Ensembl chr 4:73,740,541...73,743,716
JBrowse link
G CXCR2 C-X-C motif chemokine receptor 2 ISO RGD PMID:14738862 RGD:7257706 NCBI chr 2:218,125,294...218,137,253
Ensembl chr 2:218,125,289...218,137,251
JBrowse link
G CYP1A1 cytochrome P450 family 1 subfamily A member 1 ISO mRNA:increased expression:large intestine epithelium RGD PMID:21374063 RGD:5147670 NCBI chr15:74,719,542...74,725,528
Ensembl chr15:74,719,542...74,725,536
JBrowse link
G DUSP1 dual specificity phosphatase 1 severity ISO RGD PMID:22461024 RGD:7771532 NCBI chr 5:172,768,096...172,771,195
Ensembl chr 5:172,768,096...172,771,195
JBrowse link
G ESR2 estrogen receptor 2 ISO mRNA:decreased expression:colon RGD PMID:21252046 PMID:21252046 RGD:5508810, RGD:5508810 NCBI chr14:64,226,707...64,338,631
Ensembl chr14:64,084,232...64,338,112
JBrowse link
G FGF19 fibroblast growth factor 19 ISO CTD Direct Evidence: marker/mechanism CTD PMID:27580383 NCBI chr11:69,698,238...69,704,022
Ensembl chr11:69,698,238...69,704,022
JBrowse link
G FLNA filamin A IAGP ClinVar Annotator: match by term: Colitis ClinVar PMID:25741868 PMID:28492532 NCBI chr  X:154,348,531...154,374,634
Ensembl chr  X:154,348,524...154,374,634
JBrowse link
G GCG glucagon EXP CTD Direct Evidence: therapeutic CTD PMID:22323126 NCBI chr 2:162,142,882...162,152,247
Ensembl chr 2:162,142,882...162,152,404
JBrowse link
G GHRL ghrelin and obestatin prepropeptide EXP CTD Direct Evidence: therapeutic CTD PMID:19617644 NCBI chr 3:10,285,666...10,292,947
Ensembl chr 3:10,285,666...10,292,947
JBrowse link
G GSTA4 glutathione S-transferase alpha 4 ISO protein:increased expression:colon, epithelial cell (mouse) RGD PMID:15309552 RGD:5687963 NCBI chr 6:52,977,952...52,995,332
Ensembl chr 6:52,977,948...52,995,304
JBrowse link
G HAVCR1 hepatitis A virus cellular receptor 1 ISO mRNA:increased expression:kidney: RGD PMID:23307618 RGD:7245473 NCBI chr 5:157,028,383...157,069,633
Ensembl chr 5:157,029,413...157,059,119
JBrowse link
G HLA-B major histocompatibility complex, class I, B IAGP human gene in rat model; DNA:polymorphism:cds:HLA-B27 (human) RGD PMID:2257626 RGD:7387221 NCBI chr 6:31,353,875...31,357,179
Ensembl chr 6:31,353,872...31,357,188
JBrowse link
G HMOX1 heme oxygenase 1 treatment ISO
EXP
protein:increased expression:colon:
CTD Direct Evidence: therapeutic
CTD PMID:16365149 PMID:21444764 PMID:22261574 PMID:21853095 RGD:7207796, RGD:10766442 NCBI chr22:35,381,096...35,394,207
Ensembl chr22:35,380,361...35,394,214
JBrowse link
G HP haptoglobin treatment ISO RGD PMID:22457771 RGD:11041866 NCBI chr16:72,054,505...72,061,055
Ensembl chr16:72,054,505...72,061,055
JBrowse link
G ICAM1 intercellular adhesion molecule 1 ISO protein:increased expression:colon: RGD PMID:22261574 RGD:7207796 NCBI chr19:10,271,120...10,286,615
Ensembl chr19:10,271,093...10,286,615
JBrowse link
G ICOS inducible T cell costimulator ISO protein:increased expression:T-cell RGD PMID:14731127 RGD:1624274 NCBI chr 2:203,936,763...203,961,577
Ensembl chr 2:203,936,763...203,961,577
JBrowse link
G IFNG interferon gamma EXP CTD Direct Evidence: marker/mechanism CTD PMID:24548422 NCBI chr12:68,154,768...68,159,740
Ensembl chr12:68,154,768...68,159,740
JBrowse link
G IGF1 insulin like growth factor 1 EXP CTD Direct Evidence: marker/mechanism CTD PMID:24782617 NCBI chr12:102,395,860...102,481,839
Ensembl chr12:102,395,874...102,481,744
JBrowse link
G IKBKB inhibitor of nuclear factor kappa B kinase subunit beta treatment ISO RGD PMID:17543437 RGD:2298659 NCBI chr 8:42,270,727...42,332,460
Ensembl chr 8:42,271,302...42,332,460
JBrowse link
G IL10 interleukin 10 treatment ISO
EXP
CTD Direct Evidence: marker/mechanism|therapeutic CTD PMID:19238344 PMID:21807089 PMID:22119709 PMID:24314293 PMID:21949848 More... RGD:7349385, RGD:7771532, RGD:7365024 NCBI chr 1:206,767,602...206,772,494
Ensembl chr 1:206,767,602...206,774,541
JBrowse link
G IL17A interleukin 17A ISO
EXP
CTD Direct Evidence: marker/mechanism
mRNA:increased expression:colon
CTD PMID:24548422 PMID:14962796 PMID:20881082 RGD:4888509, RGD:4781448 NCBI chr 6:52,186,375...52,190,638
Ensembl chr 6:52,186,375...52,190,638
JBrowse link
G IL1B interleukin 1 beta ISO
EXP
CTD Direct Evidence: marker/mechanism CTD PMID:23810507 PMID:24548422 PMID:22969190 RGD:7204699 NCBI chr 2:112,829,751...112,836,843
Ensembl chr 2:112,829,751...112,836,816
JBrowse link
G IL1RL1 interleukin 1 receptor like 1 severity ISO RGD PMID:23172891 RGD:40400694 NCBI chr 2:102,311,529...102,352,367
Ensembl chr 2:102,311,502...102,352,037
JBrowse link
G IL33 interleukin 33 severity IEP
ISO
RGD PMID:28423665 PMID:23172891 RGD:39939041, RGD:40400694 NCBI chr 9:6,214,591...6,257,983
Ensembl chr 9:6,215,786...6,257,983
JBrowse link
G IL4 interleukin 4 treatment ISO
EXP
CTD Direct Evidence: therapeutic CTD PMID:24314293 PMID:9389741 RGD:8142400 NCBI chr 5:132,673,989...132,682,678
Ensembl chr 5:132,673,986...132,682,678
JBrowse link
G IL5 interleukin 5 ISO protein: increased expression RGD PMID:22018693 RGD:5687148 NCBI chr 5:132,539,194...132,556,864
Ensembl chr 5:132,541,445...132,556,838
JBrowse link
G IL6 interleukin 6 EXP CTD Direct Evidence: marker/mechanism CTD PMID:22410118 PMID:24548422 NCBI chr 7:22,725,889...22,732,002
Ensembl chr 7:22,725,884...22,732,002
JBrowse link
G ITGB2 integrin subunit beta 2 ISO associated with Spirochaetales infections RGD PMID:11031123 RGD:6482227 NCBI chr21:44,885,949...44,928,815
Ensembl chr21:44,885,953...44,931,989
JBrowse link
G KDR kinase insert domain receptor ISO protein:increased expression:colon: RGD PMID:22261574 RGD:7207796 NCBI chr 4:55,078,481...55,125,595
Ensembl chr 4:55,078,481...55,125,595
JBrowse link
G LCT lactase ISO protein:decreased expression, increased expression:jejunum RGD PMID:17218984 RGD:1600240 NCBI chr 2:135,787,850...135,837,195
Ensembl chr 2:135,787,850...135,837,184
JBrowse link
G LRRK2 leucine rich repeat kinase 2 ISO RGD PMID:21983832 RGD:5508401 NCBI chr12:40,224,890...40,369,285
Ensembl chr12:40,196,744...40,369,285
JBrowse link
G MADCAM1 mucosal vascular addressin cell adhesion molecule 1 EXP CTD Direct Evidence: therapeutic CTD PMID:16917232 NCBI chr19:496,486...505,343
Ensembl chr19:489,176...505,343
JBrowse link
G MC1R melanocortin 1 receptor ISO RGD PMID:16543288 RGD:5687320 NCBI chr16:89,918,862...89,920,972
Ensembl chr16:89,912,119...89,920,973
JBrowse link
G MIF macrophage migration inhibitory factor ISO
EXP
CTD Direct Evidence: therapeutic CTD PMID:12105854 PMID:17324399 RGD:1641979 NCBI chr22:23,894,383...23,895,223
Ensembl chr22:23,894,383...23,895,227
JBrowse link
G MIR150 microRNA 150 EXP CTD Direct Evidence: marker/mechanism CTD PMID:26937033 NCBI chr19:49,500,785...49,500,868
Ensembl chr19:49,500,785...49,500,868
JBrowse link
G MPO myeloperoxidase EXP CTD Direct Evidence: marker/mechanism CTD PMID:23810507 NCBI chr17:58,269,855...58,280,935
Ensembl chr17:58,269,855...58,280,935
JBrowse link
G MSH2 mutS homolog 2 ISO RGD PMID:23883737 RGD:10412318 NCBI chr 2:47,403,067...47,634,501
Ensembl chr 2:47,403,067...47,663,146
JBrowse link
G MUC17 mucin 17, cell surface associated treatment ISO mRNA:increased expression:ileum, colon RGD PMID:16964428 PMID:23395625 RGD:1625545, RGD:7349360 NCBI chr 7:101,020,081...101,058,859
Ensembl chr 7:101,020,072...101,058,859
JBrowse link
G MUC2 mucin 2, oligomeric mucus/gel-forming treatment ISO mRNA:decreased expression:colon
protein:decreased sulfation:descending colon
RGD PMID:19220658 PMID:21949848 PMID:23395625 PMID:12395902 RGD:2324675, RGD:7349385, RGD:7349360, RGD:7349356 NCBI chr11:1,074,875...1,110,508
Ensembl chr11:1,074,875...1,110,511
JBrowse link
G MUC3A mucin 3A, cell surface associated ISO mRNA:increased expression:ileum, colon RGD PMID:16964428 RGD:1625545 NCBI chr 7:100,949,534...100,968,347
Ensembl chr 7:100,949,534...100,968,347
JBrowse link
G NAMPT nicotinamide phosphoribosyltransferase EXP CTD Direct Evidence: marker/mechanism CTD PMID:23810507 NCBI chr 7:106,248,298...106,284,983
Ensembl chr 7:106,248,298...106,285,966
JBrowse link
G NFE2L2 nuclear factor, erythroid 2 like 2 treatment ISO RGD PMID:30142311 RGD:42724458 NCBI chr 2:177,230,303...177,265,131
Ensembl chr 2:177,227,595...177,392,697
JBrowse link
G NOD1 nucleotide binding oligomerization domain containing 1 ISO RGD PMID:20921147 RGD:5508755 NCBI chr 7:30,424,527...30,478,840
Ensembl chr 7:30,424,527...30,478,784
JBrowse link
G NOD2 nucleotide binding oligomerization domain containing 2 ISO mRNA:increased expression:colon RGD PMID:16891783 PMID:20921147 PMID:21471573 RGD:1600781, RGD:5508755, RGD:5508727 NCBI chr16:50,693,587...50,733,077
Ensembl chr16:50,693,588...50,734,041
JBrowse link
G NOS2 nitric oxide synthase 2 ISO
EXP
mRNA:increased expression:colon
CTD Direct Evidence: marker/mechanism
mRNA:increased expression:colon (mouse)
CTD PMID:8698225 PMID:17449036 PMID:16866779 PMID:21930116 RGD:4891411, RGD:5509045 NCBI chr17:27,756,766...27,800,529
Ensembl chr17:27,756,766...27,800,529
JBrowse link
G NOS3 nitric oxide synthase 3 ISO mRNA:increased expression:colon RGD PMID:17947450 RGD:2292124 NCBI chr 7:150,991,017...151,014,588
Ensembl chr 7:150,991,017...151,014,588
JBrowse link
G NTRK1 neurotrophic receptor tyrosine kinase 1 ISO mRNA, protein:increased expression:neuron RGD PMID:20638179 RGD:5684542 NCBI chr 1:156,815,750...156,881,850
Ensembl chr 1:156,815,640...156,881,850
JBrowse link
G NTRK2 neurotrophic receptor tyrosine kinase 2 ISO mRNA, protein:increased expression:dorsal root ganglion RGD PMID:20638179 RGD:5684542 NCBI chr 9:84,668,458...85,027,070
Ensembl chr 9:84,668,551...85,027,054
JBrowse link
G PGF placental growth factor ISO RGD PMID:20142801 RGD:6483587 NCBI chr14:74,941,830...74,955,764
Ensembl chr14:74,941,834...74,955,626
JBrowse link
G PIK3CG phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma ISO RGD PMID:21244371 RGD:6482682 NCBI chr 7:106,865,282...106,908,980
Ensembl chr 7:106,865,278...106,908,980
JBrowse link
G PLA2G2A phospholipase A2 group IIA ISO RGD PMID:17982090 RGD:6482729 NCBI chr 1:19,975,431...19,980,434
Ensembl chr 1:19,975,431...19,980,416
JBrowse link
G PPARA peroxisome proliferator activated receptor alpha susceptibility ISO RGD PMID:20650341 RGD:5509936 NCBI chr22:46,150,526...46,243,756
Ensembl chr22:46,150,521...46,243,756
JBrowse link
G PPARGC1A PPARG coactivator 1 alpha ISO RGD PMID:22126533 RGD:6484264 NCBI chr 4:23,792,021...24,472,905
Ensembl chr 4:23,755,041...23,904,089
JBrowse link
G PTGER4 prostaglandin E receptor 4 ISO RGD PMID:20833794 RGD:6483551 NCBI chr 5:40,679,915...40,740,936
Ensembl chr 5:40,679,915...40,693,735
JBrowse link
G PTGS2 prostaglandin-endoperoxide synthase 2 treatment ISO
EXP
CTD Direct Evidence: marker/mechanism CTD PMID:11820457 PMID:17543437 RGD:2298659 NCBI chr 1:186,671,791...186,680,423
Ensembl chr 1:186,671,791...186,680,922
JBrowse link
G RELA RELA proto-oncogene, NF-kB subunit ISO
EXP
protein:increased expression:nucleus
CTD Direct Evidence: marker/mechanism
CTD PMID:23810507 PMID:18623154 RGD:2298776 NCBI chr11:65,653,601...65,662,946
Ensembl chr11:65,653,597...65,663,090
JBrowse link
G REN renin treatment ISO RGD PMID:24858618 RGD:125097500 NCBI chr 1:204,154,819...204,166,337
Ensembl chr 1:204,154,819...204,190,324
JBrowse link
G RETN resistin treatment ISO RGD PMID:22630819 RGD:7207222 NCBI chr19:7,669,049...7,670,455
Ensembl chr19:7,669,049...7,670,455
JBrowse link
G SELL selectin L ISO RGD PMID:18054560 RGD:5685703 NCBI chr 1:169,690,667...169,711,620
Ensembl chr 1:169,690,665...169,711,702
JBrowse link
G SELP selectin P ISO protein:increased expression:colon RGD PMID:19147805 RGD:2312310 NCBI chr 1:169,588,849...169,630,125
Ensembl chr 1:169,588,849...169,630,193
JBrowse link
G SELPLG selectin P ligand ISO RGD PMID:22009715 RGD:6218987 NCBI chr12:108,621,895...108,633,894
Ensembl chr12:108,621,895...108,633,894
JBrowse link
G SI sucrase-isomaltase ISO mRNA, protein:decreased expression:ileum RGD PMID:16964428 RGD:1625545 NCBI chr 3:164,978,898...165,078,496
Ensembl chr 3:164,978,898...165,078,496
JBrowse link
G SIRT1 sirtuin 1 EXP CTD Direct Evidence: marker/mechanism CTD PMID:19940103 PMID:24548422 PMID:24782617 NCBI chr10:67,884,656...67,918,390
Ensembl chr10:67,884,656...67,918,390
JBrowse link
G SLC11A1 solute carrier family 11 member 1 ISO RGD PMID:19016783 RGD:5684975 NCBI chr 2:218,381,766...218,396,894
Ensembl chr 2:218,382,029...218,396,894
JBrowse link
G SRC SRC proto-oncogene, non-receptor tyrosine kinase EXP CTD Direct Evidence: marker/mechanism CTD PMID:17551092 NCBI chr20:37,344,690...37,406,050
Ensembl chr20:37,344,685...37,406,050
JBrowse link
G SYK spleen associated tyrosine kinase IAGP
EXP
ClinVar Annotator: match by term: Colitis
CTD Direct Evidence: marker/mechanism
ClinVar
CTD
PMID:25741868 PMID:33782605 NCBI chr 9:90,801,600...90,898,549
Ensembl chr 9:90,801,787...90,898,549
JBrowse link
G TAC1 tachykinin precursor 1 ISO RGD PMID:18715640 RGD:2304260 NCBI chr 7:97,732,086...97,740,472
Ensembl chr 7:97,732,084...97,740,472
JBrowse link
G TACR1 tachykinin receptor 1 ISO RGD PMID:18715640 RGD:2304260 NCBI chr 2:75,046,463...75,199,520
Ensembl chr 2:75,046,463...75,199,520
JBrowse link
G TACR2 tachykinin receptor 2 ISO RGD PMID:18715640 PMID:12490601 RGD:2304260, RGD:5147478 NCBI chr10:69,403,903...69,416,918
Ensembl chr10:69,403,903...69,416,918
JBrowse link
G TFF1 trefoil factor 1 ISO RGD PMID:8836141 RGD:625375 NCBI chr21:42,362,282...42,366,535
Ensembl chr21:42,362,282...42,366,535
JBrowse link
G TIMP3 TIMP metallopeptidase inhibitor 3 EXP CTD Direct Evidence: marker/mechanism CTD PMID:24548422 NCBI chr22:32,801,705...32,863,041
Ensembl chr22:32,801,705...32,863,041
JBrowse link
G TLR3 toll like receptor 3 ISO mRNA:increased expression:large intestine mucosa (rat) RGD PMID:20011045 RGD:5128708 NCBI chr 4:186,069,156...186,088,073
Ensembl chr 4:186,069,155...186,088,073
JBrowse link
G TLR4 toll like receptor 4 ISO protein:increased expression:colon RGD PMID:19002562 PMID:19924809 RGD:2312573, RGD:7794773 NCBI chr 9:117,704,403...117,724,735
Ensembl chr 9:117,704,175...117,724,735
JBrowse link
G TNF tumor necrosis factor EXP CTD Direct Evidence: marker/mechanism CTD PMID:23810507 PMID:24548422 NCBI chr 6:31,575,565...31,578,336
Ensembl chr 6:31,575,565...31,578,336
JBrowse link
G TREM1 triggering receptor expressed on myeloid cells 1 severity ISO RGD PMID:24453980 RGD:126925972 NCBI chr 6:41,267,385...41,286,692
Ensembl chr 6:41,267,926...41,286,682
JBrowse link
G TST thiosulfate sulfurtransferase EXP CTD Direct Evidence: marker/mechanism CTD PMID:19647029 NCBI chr22:37,010,859...37,020,183
Ensembl chr22:37,010,859...37,020,183
JBrowse link
G UCN urocortin ISO mRNA:altered expression:distal colon (rat) RGD PMID:21330446 RGD:5490987 NCBI chr 2:27,307,400...27,308,445
Ensembl chr 2:27,307,400...27,308,445
JBrowse link
G UCN2 urocortin 2 ISO mRNA:increased expression:colon (rat) RGD PMID:17586086 RGD:5131259 NCBI chr 3:48,561,718...48,563,781
Ensembl chr 3:48,561,718...48,563,781
JBrowse link
G VCAM1 vascular cell adhesion molecule 1 ISO protein:increased expression:colon: RGD PMID:22261574 RGD:7207796 NCBI chr 1:100,719,742...100,739,045
Ensembl chr 1:100,719,742...100,739,045
JBrowse link
G VIP vasoactive intestinal peptide ISO associated with Gram-Negative Bacterial Infections RGD PMID:19661153 RGD:5685605 NCBI chr 6:152,750,797...152,759,765
Ensembl chr 6:152,750,797...152,759,765
JBrowse link
G VIPR2 vasoactive intestinal peptide receptor 2 ISO RGD PMID:21295288 RGD:5685384 NCBI chr 7:159,028,175...159,144,957
Ensembl chr 7:159,028,175...159,144,867
JBrowse link
Crohn's disease term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCB1 ATP binding cassette subfamily B member 1 susceptibility IAGP RGD PMID:15505619 RGD:1598568 NCBI chr 7:87,503,017...87,713,295
Ensembl chr 7:87,503,017...87,713,323
JBrowse link
G ADIPOQ adiponectin, C1Q and collagen domain containing IEP
EXP
protein:increased expression:serum
CTD Direct Evidence: marker/mechanism
CTD PMID:21829567 PMID:16432373 RGD:5686726 NCBI chr 3:186,842,710...186,858,463
Ensembl chr 3:186,842,704...186,858,463
JBrowse link
G AGT angiotensinogen IAGP ClinVar Annotator: match by term: Crohn disease, association with ClinVar PMID:9120024 PMID:9894356 PMID:13937884 PMID:15077204 PMID:17047091 More... NCBI chr 1:230,702,523...230,745,583
Ensembl chr 1:230,690,776...230,745,576
JBrowse link
G ALOX12 arachidonate 12-lipoxygenase, 12S type IEP protein:increased expression:large intestine epithelium RGD PMID:7679252 RGD:5509621 NCBI chr17:6,993,791...7,010,754
Ensembl chr17:6,996,049...7,010,754
JBrowse link
G ALPI alkaline phosphatase, intestinal IEP protein:decreased expression:colonic mucosa RGD PMID:22783049 RGD:14367879 NCBI chr 2:232,456,153...232,460,753
Ensembl chr 2:232,456,125...232,460,753
JBrowse link
G APLN apelin IEP protein:increased expression:intestine RGD PMID:17391779 RGD:1626177 NCBI chr  X:129,645,259...129,654,956
Ensembl chr  X:129,645,259...129,654,956
JBrowse link
G APOA4 apolipoprotein A4 severity IEP protein:decreased expression:blood plasma (human) RGD PMID:17206692 RGD:5685660 NCBI chr11:116,820,700...116,823,304
Ensembl chr11:116,820,700...116,823,304
JBrowse link
G AQP7 aquaporin 7 severity IEP mRNA, protein:decreased expression:colon RGD PMID:15338270 RGD:1626292 NCBI chr 9:33,383,135...33,402,677
Ensembl chr 9:33,383,179...33,402,682
JBrowse link
G ATG16L1 autophagy related 16 like 1 EXP CTD Direct Evidence: marker/mechanism CTD PMID:17435756 PMID:18438406 NCBI chr 2:233,251,647...233,295,674
Ensembl chr 2:233,210,051...233,295,674
JBrowse link
G BACH2 BTB domain and CNC homolog 2 EXP CTD Direct Evidence: marker/mechanism CTD PMID:21102463 NCBI chr 6:89,926,528...90,296,843
Ensembl chr 6:89,926,528...90,296,908
JBrowse link
G BGLAP bone gamma-carboxyglutamate protein IEP mRNA:decreased expression:bone
protein:undercarboxylated:serum
RGD PMID:22535626 PMID:21482072 RGD:6483321, RGD:6483546 NCBI chr 1:156,242,184...156,243,317
Ensembl chr 1:156,242,184...156,243,317
JBrowse link
G BPI bactericidal permeability increasing protein IAGP RGD PMID:15758620 RGD:1580079 NCBI chr20:38,304,156...38,337,505
Ensembl chr20:38,304,150...38,337,505
JBrowse link
G CCL2 C-C motif chemokine ligand 2 EXP CTD Direct Evidence: marker/mechanism CTD PMID:21829567 NCBI chr17:34,255,285...34,257,203
Ensembl chr17:34,255,218...34,257,203
JBrowse link
G CCNY cyclin Y EXP CTD Direct Evidence: marker/mechanism CTD PMID:18438405 NCBI chr10:35,247,025...35,572,667
Ensembl chr10:35,247,025...35,572,669
JBrowse link
G CD40 CD40 molecule susceptibility IEP
IAGP
protein:increased expression:intestine, epithelial cell
DNA:SNP:5' utr:c.-1C>T (rs1883832) (human)
RGD PMID:20133813 PMID:20634952 RGD:5490590, RGD:5490971 NCBI chr20:46,118,242...46,129,858
Ensembl chr20:46,118,278...46,129,863
JBrowse link
G CIBAR2 CBY1 interacting BAR domain containing 2 EXP CTD Direct Evidence: marker/mechanism CTD PMID:17435756 NCBI chr16:85,098,358...85,112,508
Ensembl chr16:85,098,358...85,112,472
JBrowse link
G CLDN1 claudin 1 IDA RGD PMID:21748286 RGD:11341809 NCBI chr 3:190,305,707...190,322,446
Ensembl chr 3:190,305,707...190,322,446
JBrowse link
G CRP C-reactive protein severity IEP
EXP
protein:increased expression:serum
CTD Direct Evidence: marker/mechanism
CTD PMID:11339241 PMID:22421709 RGD:6482309 NCBI chr 1:159,712,289...159,714,589
Ensembl chr 1:159,712,289...159,714,589
JBrowse link
G DENND1B DENN domain containing 1B EXP CTD Direct Evidence: marker/mechanism CTD PMID:21102463 NCBI chr 1:197,504,748...197,782,138
Ensembl chr 1:197,504,748...197,775,696
JBrowse link
G DNMT3A DNA methyltransferase 3 alpha EXP CTD Direct Evidence: marker/mechanism CTD PMID:21102463 NCBI chr 2:25,227,874...25,342,590
Ensembl chr 2:25,227,855...25,342,590
JBrowse link
G DUOX2 dual oxidase 2 IEP mRNA:increased expression:colon (human) RGD PMID:19759286 RGD:40924645 NCBI chr15:45,092,650...45,114,172
Ensembl chr15:45,092,650...45,114,172
JBrowse link
G EFS embryonal Fyn-associated substrate ISS MouseDO NCBI chr14:23,356,402...23,365,207
Ensembl chr14:23,356,403...23,365,752
JBrowse link
G ERAP2 endoplasmic reticulum aminopeptidase 2 EXP CTD Direct Evidence: marker/mechanism CTD PMID:21102463 NCBI chr 5:96,875,939...96,919,716
Ensembl chr 5:96,875,986...96,919,703
JBrowse link
G ESR2 estrogen receptor 2 disease_progression IEP mRNA:decreased expression:colon RGD PMID:21252046 RGD:5508810 NCBI chr14:64,226,707...64,338,631
Ensembl chr14:64,084,232...64,338,112
JBrowse link
G F13A1 coagulation factor XIII A chain IEP associated with Fistula;protein:decreased activity:plasma: RGD PMID:7611208 RGD:10450739 NCBI chr 6:6,144,084...6,320,662
Ensembl chr 6:6,144,084...6,321,013
JBrowse link
G F2 coagulation factor II, thrombin IEP RGD PMID:21593018 RGD:5147754 NCBI chr11:46,719,213...46,739,506
Ensembl chr11:46,719,196...46,739,506
JBrowse link
G FCGR2A Fc fragment of IgG receptor IIa susceptibility IAGP DNA:polymorphism: :p.A519G (human) RGD PMID:20848524 RGD:5147918 NCBI chr 1:161,505,430...161,524,048
Ensembl chr 1:161,505,430...161,524,013
JBrowse link
G FCGR3A Fc fragment of IgG receptor IIIa treatment IAGP DNA:SNP:exon:p.F158V (rs396991) (human) RGD PMID:14987319 RGD:1304543 NCBI chr 1:161,541,759...161,550,737
Ensembl chr 1:161,541,759...161,550,737
JBrowse link
G FGA fibrinogen alpha chain IEP RGD PMID:19683480 RGD:5688758 NCBI chr 4:154,583,126...154,590,742
Ensembl chr 4:154,583,128...154,590,745
JBrowse link
G FGF7 fibroblast growth factor 7 IEP mRNA:increased expression:colon, ileum, myofibroblasts (human) RGD PMID:9358773 RGD:126928145 NCBI chr15:49,423,242...49,488,775
Ensembl chr15:49,423,237...49,488,775
JBrowse link
G FMNL2 formin like 2 IAGP ClinVar Annotator: match by term: Crohn's disease ClinVar NCBI chr 2:152,335,170...152,649,826
Ensembl chr 2:152,335,174...152,649,826
JBrowse link
G FN1 fibronectin 1 EXP CTD Direct Evidence: marker/mechanism CTD PMID:19751734 NCBI chr 2:215,360,862...215,436,167
Ensembl chr 2:215,360,440...215,436,073
JBrowse link
G FPR2 formyl peptide receptor 2 EXP CTD Direct Evidence: marker/mechanism CTD PMID:21659618 NCBI chr19:51,752,026...51,770,531
Ensembl chr19:51,752,026...51,770,531
JBrowse link
G FUT2 fucosyltransferase 2 EXP CTD Direct Evidence: marker/mechanism CTD PMID:21102463 NCBI chr19:48,695,971...48,705,951
Ensembl chr19:48,695,971...48,705,951
JBrowse link
G GC GC vitamin D binding protein susceptibility IAGP DNA:polymorphism:cds:p.T420K(human) RGD PMID:21832969 RGD:5509866 NCBI chr 4:71,741,693...71,805,520
Ensembl chr 4:71,741,696...71,804,041
JBrowse link
G GPBAR1 G protein-coupled bile acid receptor 1 EXP CTD Direct Evidence: marker/mechanism CTD PMID:23566200 NCBI chr 2:218,259,496...218,263,861
Ensembl chr 2:218,259,496...218,263,861
JBrowse link
G GPX1 glutathione peroxidase 1 IEP protein:decreased expression:erythrocyte RGD PMID:20186929 RGD:11352754 NCBI chr 3:49,357,176...49,358,353
Ensembl chr 3:49,357,176...49,358,353
JBrowse link
G GSTM1 glutathione S-transferase mu 1 IAGP RGD PMID:26604430 RGD:11538341 NCBI chr 1:109,687,817...109,693,745
Ensembl chr 1:109,687,814...109,709,039
JBrowse link
G GSTT1 glutathione S-transferase theta 1 susceptibility IAGP DNA:deletion: : RGD PMID:17565649 RGD:5490554
G HFE homeostatic iron regulator treatment IAGP DNA:SNP: :rs2071303 (human) RGD PMID:27115882 RGD:14701051 NCBI chr 6:26,087,347...26,098,343
Ensembl chr 6:26,087,281...26,098,343
JBrowse link
G HLA-DPA1 major histocompatibility complex, class II, DP alpha 1 IAGP RGD PMID:12073072 RGD:6480648 NCBI chr 6:33,064,569...33,080,748
Ensembl chr 6:33,064,569...33,080,775
JBrowse link
G HLA-DQB1 major histocompatibility complex, class II, DQ beta 1 IAGP RGD PMID:29358886 RGD:14974239 NCBI chr 6:32,659,467...32,666,657
Ensembl chr 6:32,659,467...32,668,383
JBrowse link
G HLA-DRB1 major histocompatibility complex, class II, DR beta 1 EXP CTD Direct Evidence: marker/mechanism CTD PMID:25559196 NCBI chr 6:32,578,775...32,589,848
Ensembl chr 6:32,578,769...32,589,848
JBrowse link
G HSPA1L heat shock protein family A (Hsp70) member 1 like IAGP ClinVar Annotator: match by term: Inflammatory bowel disease 1 ClinVar PMID:28126021 NCBI chr 6:31,809,619...31,815,283
Ensembl chr 6:31,809,619...31,815,283
JBrowse link
G ICAM1 intercellular adhesion molecule 1 IAGP RGD PMID:15638228 RGD:1625756 NCBI chr19:10,271,120...10,286,615
Ensembl chr19:10,271,093...10,286,615
JBrowse link
G IFNG interferon gamma EXP
IEP
CTD Direct Evidence: marker/mechanism CTD PMID:21829567 PMID:28070144 RGD:14974261 NCBI chr12:68,154,768...68,159,740
Ensembl chr12:68,154,768...68,159,740
JBrowse link
G IGF1 insulin like growth factor 1 EXP CTD Direct Evidence: marker/mechanism CTD PMID:19751734 NCBI chr12:102,395,860...102,481,839
Ensembl chr12:102,395,874...102,481,744
JBrowse link
G IL10 interleukin 10 treatment IDA
ISO
EXP
CTD Direct Evidence: marker/mechanism CTD PMID:21102463 PMID:11113068 PMID:29899181 RGD:11049181, RGD:14975133 NCBI chr 1:206,767,602...206,772,494
Ensembl chr 1:206,767,602...206,774,541
JBrowse link
G IL12B interleukin 12B EXP CTD Direct Evidence: marker/mechanism CTD PMID:18438406 NCBI chr 5:159,314,780...159,330,487
Ensembl chr 5:159,314,780...159,330,487
JBrowse link
G IL21R interleukin 21 receptor IAGP DNA:altered methylation: : RGD PMID:22021194 RGD:6482789 NCBI chr16:27,402,162...27,452,043
Ensembl chr16:27,402,174...27,452,042
JBrowse link
G IL23R interleukin 23 receptor susceptibility IAGP
EXP
DNA:SNPs:multiple:
CTD Direct Evidence: marker/mechanism
CTD PMID:17435756 PMID:18438406 PMID:17068223 RGD:8549568 NCBI chr 1:67,138,639...67,259,979
Ensembl chr 1:67,138,907...67,259,979
JBrowse link
G IL2RA interleukin 2 receptor subunit alpha EXP CTD Direct Evidence: marker/mechanism CTD PMID:21102463 NCBI chr10:6,010,689...6,062,367
Ensembl chr10:6,010,689...6,062,370
JBrowse link
G IL6 interleukin 6 EXP
IAGP
CTD Direct Evidence: marker/mechanism CTD
OMIM
PMID:10700533 PMID:21829567 NCBI chr 7:22,725,889...22,732,002
Ensembl chr 7:22,725,884...22,732,002
JBrowse link
G IRGM immunity related GTPase M EXP CTD Direct Evidence: marker/mechanism CTD PMID:17554261 PMID:18438406 PMID:19165925 PMID:21278745 NCBI chr 5:150,846,521...150,902,402
Ensembl chr 5:150,846,523...150,900,736
JBrowse link
G JAK2 Janus kinase 2 IAGP DNA:SNP: :rs10758669 (human) RGD PMID:22269120 RGD:6483020 NCBI chr 9:4,984,390...5,129,948
Ensembl chr 9:4,984,390...5,129,948
JBrowse link
G KDR kinase insert domain receptor IEP protein:increased expression:colon RGD PMID:19013462 RGD:5684406 NCBI chr 4:55,078,481...55,125,595
Ensembl chr 4:55,078,481...55,125,595
JBrowse link
G LEP leptin EXP CTD Direct Evidence: marker/mechanism CTD PMID:21829567 NCBI chr 7:128,241,201...128,257,629
Ensembl chr 7:128,241,278...128,257,629
JBrowse link
G LRRK2 leucine rich repeat kinase 2 IAGP DNA:point mutation: :p.T2397M (rs3761863) (human) RGD PMID:21983832 RGD:5508401 NCBI chr12:40,224,890...40,369,285
Ensembl chr12:40,196,744...40,369,285
JBrowse link
G MADCAM1 mucosal vascular addressin cell adhesion molecule 1 ISO RGD PMID:11703369 RGD:2311550 NCBI chr19:496,486...505,343
Ensembl chr19:489,176...505,343
JBrowse link
G MBL2 mannose binding lectin 2 susceptibility IAGP DNA:polymorphisms:cds: RGD PMID:21702710 RGD:12910842 NCBI chr10:52,765,380...52,772,784
Ensembl chr10:52,765,380...52,772,784
JBrowse link
G MIR155 microRNA 155 IEP miRNA:decreased expression:feces RGD PMID:30927737 PMID:29668922 PMID:29325325 RGD:21079443, RGD:24922213, RGD:24922207 NCBI chr21:25,573,980...25,574,044
Ensembl chr21:25,573,980...25,574,044
JBrowse link
G MIR21 microRNA 21 IEP RNA:increased expression:leukocyte RGD PMID:25144570 RGD:41404530 NCBI chr17:59,841,266...59,841,337
Ensembl chr17:59,841,266...59,841,337
JBrowse link
G MKI67 marker of proliferation Ki-67 IDA RGD PMID:21364546 RGD:6483536 NCBI chr10:128,096,659...128,126,423
Ensembl chr10:128,096,659...128,126,423
JBrowse link
G MST1 macrophage stimulating 1 EXP CTD Direct Evidence: marker/mechanism CTD PMID:18438406 NCBI chr 3:49,683,947...49,689,523
Ensembl chr 3:49,683,947...49,689,501
JBrowse link
G MTHFR methylenetetrahydrofolate reductase EXP CTD Direct Evidence: marker/mechanism CTD PMID:28002332 NCBI chr 1:11,785,723...11,806,103
Ensembl chr 1:11,785,723...11,806,455
JBrowse link
G NCF4 neutrophil cytosolic factor 4 EXP CTD Direct Evidence: marker/mechanism CTD PMID:17435756 NCBI chr22:36,861,006...36,878,015
Ensembl chr22:36,860,988...36,878,017
JBrowse link
G NKX2-3 NK2 homeobox 3 EXP CTD Direct Evidence: marker/mechanism CTD PMID:17554261 PMID:18438405 PMID:18438406 NCBI chr10:99,532,942...99,536,524
Ensembl chr10:99,532,942...99,536,524
JBrowse link
G NLRP3 NLR family pyrin domain containing 3 EXP CTD Direct Evidence: marker/mechanism CTD PMID:19098911 NCBI chr 1:247,416,163...247,448,823
Ensembl chr 1:247,416,156...247,449,108
JBrowse link
G NOD2 nucleotide binding oligomerization domain containing 2 susceptibility
no_association
IAGP
EXP
DNA:frameshift mutation, missense mutations
ClinVar Annotator: match by term: Inflammatory bowel disease 1
ClinVar Annotator: match by term: Crohn disease
ClinVar Annotator: match by term: Enteritis, Granulomatous
ClinVar Annotator: match by term: REGIONAL ENTERITIS
ClinVar Annotator: match by term: Crohn's disease
CTD Direct Evidence: marker/mechanism
DNA:missense mutations, frameshift mutation: :p.R702W, p.G908R, 3020_3021insC (human)
DNA:missense mutations: :multiple (human)
ClinVar
OMIM
CTD
PMID:11385576 PMID:11385577 PMID:11425413 PMID:11528384 PMID:11875755 More... RGD:1600778, RGD:5508730, RGD:5508719 NCBI chr16:50,693,587...50,733,077
Ensembl chr16:50,693,588...50,734,041
JBrowse link
G NR1H4 nuclear receptor subfamily 1 group H member 4 EXP CTD Direct Evidence: marker/mechanism CTD PMID:21829567 NCBI chr12:100,473,866...100,564,414
Ensembl chr12:100,473,708...100,564,414
JBrowse link
G OCLN occludin IDA RGD PMID:21748286 RGD:11341809 NCBI chr 5:69,492,547...69,558,104
Ensembl chr 5:69,492,292...69,558,104
JBrowse link
G PBRM1 polybromo 1 IEP mRNA:decreased expression:colon RGD PMID:28940253 RGD:150340627 NCBI chr 3:52,545,367...52,685,913
Ensembl chr 3:52,545,352...52,685,917
JBrowse link
G PGF placental growth factor IEP protein:increased expression:serum RGD PMID:17980128 RGD:6483592 NCBI chr14:74,941,830...74,955,764
Ensembl chr14:74,941,834...74,955,626
JBrowse link
G PHOX2B paired like homeobox 2B EXP CTD Direct Evidence: marker/mechanism CTD PMID:17435756 NCBI chr 4:41,744,082...41,748,725
Ensembl chr 4:41,744,082...41,748,725
JBrowse link
G PIKFYVE phosphoinositide kinase, FYVE-type zinc finger containing ISS MouseDO NCBI chr 2:208,266,178...208,358,747
Ensembl chr 2:208,266,255...208,358,746
JBrowse link
G PLAUR plasminogen activator, urokinase receptor IEP RGD PMID:21114432 RGD:6483800 NCBI chr19:43,646,095...43,670,197
Ensembl chr19:43,646,095...43,670,547
JBrowse link
G PON1 paraoxonase 1 IEP mRNA:decreased expression:terminal ileum RGD PMID:17664137 RGD:5509924 NCBI chr 7:95,297,676...95,324,532
Ensembl chr 7:95,297,676...95,324,532
JBrowse link
G PON3 paraoxonase 3 IEP mRNA:decreased expression:terminal ileum RGD PMID:17664137 RGD:5509924 NCBI chr 7:95,359,872...95,396,375
Ensembl chr 7:95,359,872...95,396,375
JBrowse link
G PPARA peroxisome proliferator activated receptor alpha EXP CTD Direct Evidence: marker/mechanism CTD PMID:21829567 NCBI chr22:46,150,526...46,243,756
Ensembl chr22:46,150,521...46,243,756
JBrowse link
G PPARG peroxisome proliferator activated receptor gamma EXP CTD Direct Evidence: marker/mechanism CTD PMID:21829567 NCBI chr 3:12,287,368...12,434,344
Ensembl chr 3:12,287,368...12,434,356
JBrowse link
G PRF1 perforin 1 IDA DNA:hypermethylation RGD PMID:22021194 RGD:6482789 NCBI chr10:70,597,348...70,602,741
Ensembl chr10:70,597,348...70,602,759
JBrowse link
G PRKCQ protein kinase C theta IAGP ClinVar Annotator: match by term: Inflammatory bowel disease 1 ClinVar NCBI chr10:6,393,038...6,580,646
Ensembl chr10:6,427,143...6,580,301
JBrowse link
G PTGS2 prostaglandin-endoperoxide synthase 2 ISO protein:increased expression:colon RGD PMID:21763290 RGD:5508200 NCBI chr 1:186,671,791...186,680,423
Ensembl chr 1:186,671,791...186,680,922
JBrowse link
G PTPN2 protein tyrosine phosphatase non-receptor type 2 EXP CTD Direct Evidence: marker/mechanism CTD PMID:17554261 NCBI chr18:12,785,478...12,884,351
Ensembl chr18:12,785,478...12,929,643
JBrowse link
G PTPN22 protein tyrosine phosphatase non-receptor type 22 IAGP DNA:SNP:cds:rs2476601 (human) RGD PMID:18587394 RGD:6484668 NCBI chr 1:113,813,811...113,871,761
Ensembl chr 1:113,813,811...113,871,753
JBrowse link
G SELL selectin L IAGP DNA:polymorphism: :p.F206L (human) RGD PMID:19212205 RGD:13464267 NCBI chr 1:169,690,667...169,711,620
Ensembl chr 1:169,690,665...169,711,702
JBrowse link
G SLC11A1 solute carrier family 11 member 1 no_association IAGP
EXP
DNA:repeat, polymorphisms:promoter, intron:p.D543N (human)
CTD Direct Evidence: marker/mechanism
DNA:polymorphism:promoter (human)
DNA:point mutation:promoter:-237C>T (human)
DNA:polymorphism: :823C>T (human)
DNA:polymorphisms:promoter (human)
DNA:insertion/deletion:3' utr (human)
CTD PMID:16059695 PMID:18454481 PMID:11929588 PMID:15757519 PMID:16059695 More... RGD:5684938, RGD:5684968, RGD:5684956, RGD:5684952, RGD:5684942, RGD:5684941, RGD:5684939 NCBI chr 2:218,381,766...218,396,894
Ensembl chr 2:218,382,029...218,396,894
JBrowse link
G SLC22A5 solute carrier family 22 member 5 susceptibility IAGP DNA:snp, haplotype:promoter:g.-207G>C (human) RGD PMID:15107849 RGD:1580609 NCBI chr 5:132,369,704...132,395,614
Ensembl chr 5:132,369,710...132,395,613
JBrowse link
G SMAD3 SMAD family member 3 EXP CTD Direct Evidence: marker/mechanism CTD PMID:21102463 NCBI chr15:67,065,602...67,195,195
Ensembl chr15:67,063,763...67,195,173
JBrowse link
G STAT3 signal transducer and activator of transcription 3 IAGP DNA:SNP: :rs744166 (human)
DNA:SNPs: :rs744166, rs3816769 (human)
RGD PMID:22269120 PMID:20109474 RGD:6483020, RGD:6483027 NCBI chr17:42,313,324...42,388,502
Ensembl chr17:42,313,324...42,388,540
JBrowse link
G TAGAP T cell activation RhoGTPase activating protein EXP CTD Direct Evidence: marker/mechanism CTD PMID:21102463 NCBI chr 6:159,034,481...159,044,991
Ensembl chr 6:159,034,468...159,045,152
JBrowse link
G TCF7 transcription factor 7 EXP CTD Direct Evidence: marker/mechanism CTD PMID:24994854 NCBI chr 5:134,114,681...134,148,229
Ensembl chr 5:134,114,681...134,151,865
JBrowse link
G THBD thrombomodulin IEP protein:decreased expression:colon, blood vessel RGD PMID:17557119 RGD:5685011 NCBI chr20:23,045,633...23,049,672
Ensembl chr20:23,045,633...23,049,672
JBrowse link
G TLR4 toll like receptor 4 EXP CTD Direct Evidence: marker/mechanism CTD PMID:17914947 NCBI chr 9:117,704,403...117,724,735
Ensembl chr 9:117,704,175...117,724,735
JBrowse link
G TLR9 toll like receptor 9 EXP CTD Direct Evidence: marker/mechanism CTD PMID:15236225 PMID:17914947 NCBI chr 3:52,221,080...52,225,645
Ensembl chr 3:52,221,080...52,225,645
JBrowse link
G TNF tumor necrosis factor treatment ISO
EXP
protein:increased expression:intestine mucosa
CTD Direct Evidence: marker/mechanism
CTD PMID:10700533 PMID:21829567 PMID:21359923 PMID:22531889 RGD:5130893, RGD:8661753 NCBI chr 6:31,575,565...31,578,336
Ensembl chr 6:31,575,565...31,578,336
JBrowse link
G TNFRSF1A TNF receptor superfamily member 1A treatment ISO protein:increased expression:large intestine mucosa (rat) RGD PMID:21359923 PMID:22531889 RGD:5130893, RGD:8661753 NCBI chr12:6,328,771...6,342,076
Ensembl chr12:6,328,757...6,342,114
JBrowse link
G TNFRSF1B TNF receptor superfamily member 1B ISO protein:increased expression:large intestine mucosa (rat) RGD PMID:21359923 RGD:5130893 NCBI chr 1:12,166,948...12,209,222
Ensembl chr 1:12,166,991...12,209,228
JBrowse link
G TYK2 tyrosine kinase 2 EXP CTD Direct Evidence: marker/mechanism CTD PMID:21102463 NCBI chr19:10,350,528...10,380,572
Ensembl chr19:10,350,529...10,380,572
JBrowse link
G UGT1A1 UDP glucuronosyltransferase family 1 member A1 IAGP DNA:polymorphism:promoter RGD PMID:22398043 RGD:6482850 NCBI chr 2:233,760,270...233,773,300
Ensembl chr 2:233,760,270...233,773,300
JBrowse link
G VDR vitamin D receptor IEA GAD PMID:15118671 RGD:1331525 NCBI chr12:47,841,537...47,905,022
Ensembl chr12:47,841,537...47,943,048
JBrowse link
G VEGFA vascular endothelial growth factor A IEP protein:increased expression:colon, plasma RGD PMID:19013462 RGD:5684406 NCBI chr 6:43,770,209...43,786,487
Ensembl chr 6:43,770,184...43,786,487
JBrowse link
G VIPR1 vasoactive intestinal peptide receptor 1 IEP RGD PMID:17611633 RGD:5685618 NCBI chr 3:42,489,299...42,537,573
Ensembl chr 3:42,489,299...42,537,573
JBrowse link
G VTN vitronectin EXP CTD Direct Evidence: marker/mechanism CTD PMID:19751734 NCBI chr17:28,367,284...28,370,307
Ensembl chr17:28,367,284...28,373,091
JBrowse link
Experimental Colitis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACE angiotensin I converting enzyme treatment ISO RGD PMID:24239644 PMID:17342403 RGD:40400720, RGD:40400748 NCBI chr17:63,477,061...63,498,373
Ensembl chr17:63,477,061...63,498,380
JBrowse link
G ACER3 alkaline ceramidase 3 severity ISO mRNA,protein:decreased expression, decreased activity:colon: RGD PMID:26938296 PMID:26938296 RGD:35673322, RGD:35673322 NCBI chr11:76,860,888...77,026,797
Ensembl chr11:76,860,859...77,026,797
JBrowse link
G ADAM17 ADAM metallopeptidase domain 17 treatment ISO RGD PMID:11884025 RGD:632022 NCBI chr 2:9,488,486...9,555,830
Ensembl chr 2:9,488,486...9,556,732
JBrowse link
G ADRB3 adrenoceptor beta 3 no_association ISO mRNA:unaltered expression:colon (rat) RGD PMID:11803250 RGD:5684894 NCBI chr 8:37,962,990...37,966,599
Ensembl chr 8:37,962,990...37,966,599
JBrowse link
G ATM ATM serine/threonine kinase exacerbates ISO RGD PMID:20179206 RGD:126781749 NCBI chr11:108,222,484...108,369,102
Ensembl chr11:108,223,044...108,369,102
JBrowse link
G ATP5F1A ATP synthase F1 subunit alpha treatment ISO RGD PMID:25689466 RGD:13703055 NCBI chr18:46,080,248...46,104,227
Ensembl chr18:46,080,248...46,104,334
JBrowse link
G CD68 CD68 molecule treatment ISO RGD PMID:25004394 RGD:40925931 NCBI chr17:7,579,638...7,582,111
Ensembl chr17:7,579,491...7,582,111
JBrowse link
G CSF3 colony stimulating factor 3 treatment IDA RGD PMID:16689657 RGD:11039462 NCBI chr17:40,015,440...40,017,813
Ensembl chr17:40,015,361...40,017,813
JBrowse link
G CXCL8 C-X-C motif chemokine ligand 8 treatment IMP RGD PMID:29655167 RGD:39939058 NCBI chr 4:73,740,569...73,743,716
Ensembl chr 4:73,740,541...73,743,716
JBrowse link
G EREG epiregulin ISO protein:increased expression:colonic mucosa (mouse) RGD PMID:20498653 RGD:39457688 NCBI chr 4:74,365,145...74,388,749
Ensembl chr 4:74,365,145...74,388,749
JBrowse link
G EZH2 enhancer of zeste 2 polycomb repressive complex 2 subunit treatment ISO RGD PMID:31160593 RGD:126779602 NCBI chr 7:148,807,374...148,884,344
Ensembl chr 7:148,807,257...148,884,321
JBrowse link
G FAS Fas cell surface death receptor treatment ISO RGD PMID:22368862 RGD:10054108 NCBI chr10:88,968,429...89,017,059
Ensembl chr10:88,990,531...89,017,059
JBrowse link
G FGF10 fibroblast growth factor 10 treatment IDA
ISO
IMP
human protein in mouse model
human gene product in mouse model
human protein in mouse model with bacterial delivery system
RGD PMID:10381813 PMID:11952999 PMID:23676805 PMID:19736360 RGD:126928132, RGD:127284874, RGD:127284855, RGD:126928133 NCBI chr 5:44,300,247...44,389,706
Ensembl chr 5:44,300,247...44,389,706
JBrowse link
G FGF7 fibroblast growth factor 7 treatment IDA human protein in mouse model RGD PMID:10219846 RGD:126928136 NCBI chr15:49,423,242...49,488,775
Ensembl chr15:49,423,237...49,488,775
JBrowse link
G FOXP3 forkhead box P3 treatment ISO mRNA:increased expression:mucosa:
protein:increased expression:colon:
RGD PMID:26925602 PMID:28733028 PMID:27498708 PMID:17229795 RGD:38455994, RGD:38549362, RGD:14975101, RGD:38455995 NCBI chr  X:49,250,436...49,264,932
Ensembl chr  X:49,250,438...49,270,477
JBrowse link
G HAMP hepcidin antimicrobial peptide ISO protein:increased expression:colon RGD PMID:24764672 RGD:11041628 NCBI chr19:35,282,528...35,285,143
Ensembl chr19:35,280,716...35,285,143
JBrowse link
G HSF1 heat shock transcription factor 1 ISO protein:increased acetylation:colon (rat) RGD PMID:25608526 RGD:10402402 NCBI chr 8:144,291,603...144,314,720
Ensembl chr 8:144,291,591...144,314,720
JBrowse link
G ICAM1 intercellular adhesion molecule 1 treatment ISO RGD PMID:10092309 RGD:11522714 NCBI chr19:10,271,120...10,286,615
Ensembl chr19:10,271,093...10,286,615
JBrowse link
G IFNG interferon gamma ISO protein:increased expression:plasma: RGD PMID:15030379 PMID:27498708 RGD:10755756, RGD:14975101 NCBI chr12:68,154,768...68,159,740
Ensembl chr12:68,154,768...68,159,740
JBrowse link
G IFNGR1 interferon gamma receptor 1 ameliorates ISO RGD PMID:25918247 RGD:124715468 NCBI chr 6:137,197,484...137,220,351
Ensembl chr 6:137,197,485...137,219,449
JBrowse link
G IL10 interleukin 10 treatment ISO associated with Helicobacter Infections RGD PMID:16982822 PMID:27815529 PMID:25727887 RGD:11049170, RGD:14975260, RGD:11049485 NCBI chr 1:206,767,602...206,772,494
Ensembl chr 1:206,767,602...206,774,541
JBrowse link
G IL1B interleukin 1 beta treatment ISO RGD PMID:31175857 RGD:14975282 NCBI chr 2:112,829,751...112,836,843
Ensembl chr 2:112,829,751...112,836,816
JBrowse link
G IL1RN interleukin 1 receptor antagonist treatment IDA human protein in a rat model RGD PMID:8978354 RGD:8551835 NCBI chr 2:113,099,365...113,134,016
Ensembl chr 2:113,107,214...113,134,016
JBrowse link
G IL2 interleukin 2 ISO RGD PMID:16630696 RGD:8662978 NCBI chr 4:122,451,470...122,456,725
Ensembl chr 4:122,451,470...122,456,725
JBrowse link
G IL23A interleukin 23 subunit alpha severity ISO mRNA:increased expression:colon (mouse) RGD PMID:24028683 RGD:39458035 NCBI chr12:56,334,159...56,340,410
Ensembl chr12:56,334,174...56,340,410
JBrowse link
G IL25 interleukin 25 treatment ISO RGD PMID:19118508 RGD:39456129 NCBI chr14:23,372,809...23,376,403
Ensembl chr14:23,372,809...23,376,403
JBrowse link
G IL33 interleukin 33 severity
treatment
ISO RGD PMID:25112700 PMID:28423665 RGD:39938951, RGD:39939041 NCBI chr 9:6,214,591...6,257,983
Ensembl chr 9:6,215,786...6,257,983
JBrowse link
G IL6 interleukin 6 treatment ISO RGD PMID:16630696 PMID:27096537 PMID:16133010 RGD:8662978, RGD:11062146, RGD:11062139 NCBI chr 7:22,725,889...22,732,002
Ensembl chr 7:22,725,884...22,732,002
JBrowse link
G IRF9 interferon regulatory factor 9 ameliorates ISO RGD PMID:25918247 RGD:124715468 NCBI chr14:24,161,265...24,166,565
Ensembl chr14:24,161,265...24,166,565
JBrowse link
G ITGA2 integrin subunit alpha 2 treatment ISO RGD PMID:16534417 RGD:11530069 NCBI chr 5:52,989,352...53,094,779
Ensembl chr 5:52,989,340...53,094,779
JBrowse link
G ITGA4 integrin subunit alpha 4 ISO protein:increased expression:colon (rat) RGD PMID:12183646 RGD:729408 NCBI chr 2:181,457,205...181,538,940
Ensembl chr 2:181,457,202...181,538,940
JBrowse link
G KCNMA1 potassium calcium-activated channel subfamily M alpha 1 ISO mRNA, protein:increased expression:colon RGD PMID:23986198 RGD:10412026 NCBI chr10:76,869,602...77,637,969
Ensembl chr10:76,869,601...77,638,369
JBrowse link
G KDR kinase insert domain receptor ISO protein:increased expression:colon RGD PMID:19013462 RGD:5684406 NCBI chr 4:55,078,481...55,125,595
Ensembl chr 4:55,078,481...55,125,595
JBrowse link
G KL klotho ISO mRNA:decreased expression:kidney: RGD PMID:20004202 RGD:10403055 NCBI chr13:33,016,063...33,066,143
Ensembl chr13:33,016,423...33,066,143
JBrowse link
G MAPK1 mitogen-activated protein kinase 1 treatment ISO RGD PMID:27028006 RGD:13800882 NCBI chr22:21,759,657...21,867,680
Ensembl chr22:21,759,657...21,867,680
JBrowse link
G MAPK3 mitogen-activated protein kinase 3 treatment ISO RGD PMID:29037916 RGD:13800567 NCBI chr16:30,114,105...30,123,309
Ensembl chr16:30,114,105...30,123,506
JBrowse link
G MIF macrophage migration inhibitory factor severity ISO RGD PMID:15807847 RGD:36947390 NCBI chr22:23,894,383...23,895,223
Ensembl chr22:23,894,383...23,895,227
JBrowse link
G MIR146A microRNA 146a ISO miRNA:increased expression:colon, small intestine (mouse) RGD PMID:24092752 RGD:126925183 NCBI chr 5:160,485,352...160,485,450
Ensembl chr 5:160,485,352...160,485,450
JBrowse link
G MIR155 microRNA 155 treatment ISO associated with Helicobacter Infections RGD PMID:30927737 PMID:28461115 PMID:28752563 PMID:30253332 PMID:21880981 More... RGD:21079443, RGD:25314295, RGD:24922208, RGD:21081536, RGD:21079473, RGD:21079463 NCBI chr21:25,573,980...25,574,044
Ensembl chr21:25,573,980...25,574,044
JBrowse link
G MIR21 microRNA 21 ameliorates ISO RGD PMID:23826144 RGD:41404691 NCBI chr17:59,841,266...59,841,337
Ensembl chr17:59,841,266...59,841,337
JBrowse link
G MMP2 matrix metallopeptidase 2 treatment ISO RGD PMID:23323009 RGD:13207328 NCBI chr16:55,478,830...55,506,691
Ensembl chr16:55,389,700...55,506,691
JBrowse link
G MMP9 matrix metallopeptidase 9 treatment ISO RGD PMID:23323009 RGD:13207328 NCBI chr20:46,008,908...46,016,561
Ensembl chr20:46,008,908...46,016,561
JBrowse link
G NFE2L2 nuclear factor, erythroid 2 like 2 treatment ISO RGD PMID:22350949 RGD:10412739 NCBI chr 2:177,230,303...177,265,131
Ensembl chr 2:177,227,595...177,392,697
JBrowse link
G NFKBIA NFKB inhibitor alpha treatment ISO RGD PMID:21642017 RGD:10413866 NCBI chr14:35,401,513...35,404,749
Ensembl chr14:35,401,513...35,404,749
JBrowse link
G NOD2 nucleotide binding oligomerization domain containing 2 ISO protein:increased expression:colonic mucosa: RGD PMID:22997830 RGD:13204727 NCBI chr16:50,693,587...50,733,077
Ensembl chr16:50,693,588...50,734,041
JBrowse link
G NPY neuropeptide Y treatment ISO RGD PMID:20533056 RGD:10448943 NCBI chr 7:24,284,190...24,291,862
Ensembl chr 7:24,284,188...24,291,862
JBrowse link
G PDGFRA platelet derived growth factor receptor alpha treatment ISO RGD PMID:24115822 RGD:11080973 NCBI chr 4:54,229,127...54,298,245
Ensembl chr 4:54,229,280...54,298,245
JBrowse link
G PDGFRB platelet derived growth factor receptor beta treatment ISO RGD PMID:24115822 RGD:11080973 NCBI chr 5:150,113,839...150,155,845
Ensembl chr 5:150,113,839...150,155,872
JBrowse link
G PHEX phosphate regulating endopeptidase homolog X-linked ISO mRNA:decreased expression:bone: RGD PMID:16890604 RGD:11556253 NCBI chr  X:22,032,325...22,251,310
Ensembl chr  X:22,032,325...22,494,713
JBrowse link
G PIK3CG phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma susceptibility ISO RGD PMID:20347874 RGD:38599183 NCBI chr 7:106,865,282...106,908,980
Ensembl chr 7:106,865,278...106,908,980
JBrowse link
G PTGER4 prostaglandin E receptor 4 treatment ISO RGD PMID:12100473 RGD:727388 NCBI chr 5:40,679,915...40,740,936
Ensembl chr 5:40,679,915...40,693,735
JBrowse link
G RNASEL ribonuclease L severity ISO RGD PMID:23567782 RGD:40902808 NCBI chr 1:182,573,634...182,589,285
Ensembl chr 1:182,573,634...182,589,256
JBrowse link
G SLC11A1 solute carrier family 11 member 1 ISO RGD PMID:19116231 RGD:5684934 NCBI chr 2:218,381,766...218,396,894
Ensembl chr 2:218,382,029...218,396,894
JBrowse link
G SMAD4 SMAD family member 4 susceptibility ISO RGD PMID:23090737 RGD:12880038 NCBI chr18:51,030,213...51,085,042
Ensembl chr18:51,028,394...51,085,045
JBrowse link
G TNF tumor necrosis factor treatment ISO RGD PMID:21296062 RGD:8661763 NCBI chr 6:31,575,565...31,578,336
Ensembl chr 6:31,575,565...31,578,336
JBrowse link
G TNFRSF1A TNF receptor superfamily member 1A treatment ISO RGD PMID:21296062 RGD:8661763 NCBI chr12:6,328,771...6,342,076
Ensembl chr12:6,328,757...6,342,114
JBrowse link
G VEGFA vascular endothelial growth factor A ISO protein:increased expression:colon RGD PMID:19013462 RGD:5684406 NCBI chr 6:43,770,209...43,786,487
Ensembl chr 6:43,770,184...43,786,487
JBrowse link
ileitis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCR2 C-C motif chemokine receptor 2 ISO RGD PMID:22848538 RGD:8661712 NCBI chr 3:46,354,111...46,360,940
Ensembl chr 3:46,353,864...46,360,940
JBrowse link
G CCR3 C-C motif chemokine receptor 3 ISO RGD PMID:21945903 RGD:6892917 NCBI chr 3:46,210,699...46,266,706
Ensembl chr 3:46,130,890...46,266,706
JBrowse link
G CD80 CD80 molecule ISO RGD PMID:22068168 RGD:6902902 NCBI chr 3:119,524,293...119,559,614
Ensembl chr 3:119,524,293...119,559,614
JBrowse link
G IL10 interleukin 10 EXP CTD Direct Evidence: marker/mechanism CTD PMID:27580383 NCBI chr 1:206,767,602...206,772,494
Ensembl chr 1:206,767,602...206,774,541
JBrowse link
G IL17A interleukin 17A ISO mRNA:increased expression:ileum RGD PMID:18536735 RGD:4837793 NCBI chr 6:52,186,375...52,190,638
Ensembl chr 6:52,186,375...52,190,638
JBrowse link
G ITGAM integrin subunit alpha M EXP CTD Direct Evidence: marker/mechanism CTD PMID:10647630 NCBI chr16:31,259,975...31,332,877
Ensembl chr16:31,259,967...31,332,892
JBrowse link
G SERPINA1 serpin family A member 1 treatment IDA RGD PMID:23835442 RGD:14695050 NCBI chr14:94,376,747...94,390,654
Ensembl chr14:94,376,747...94,390,693
JBrowse link
G TLR2 toll like receptor 2 ISO RGD PMID:18266231 RGD:2312714 NCBI chr 4:153,684,080...153,710,643
Ensembl chr 4:153,684,070...153,706,260
JBrowse link
G TLR4 toll like receptor 4 ISO RGD PMID:17255219 PMID:18266231 RGD:7241089, RGD:2312714 NCBI chr 9:117,704,403...117,724,735
Ensembl chr 9:117,704,175...117,724,735
JBrowse link
inflammatory bowel disease 1 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HSPA1L heat shock protein family A (Hsp70) member 1 like IAGP ClinVar Annotator: match by term: Inflammatory bowel disease 1 ClinVar PMID:28126021 NCBI chr 6:31,809,619...31,815,283
Ensembl chr 6:31,809,619...31,815,283
JBrowse link
G IL6 interleukin 6 IEA OMIM:266600 MouseDO NCBI chr 7:22,725,889...22,732,002
Ensembl chr 7:22,725,884...22,732,002
JBrowse link
G NOD2 nucleotide binding oligomerization domain containing 2 ISS
IAGP
IEA
OMIM:266600
ClinVar Annotator: match by term: Inflammatory bowel disease 1
MouseDO
ClinVar
PMID:11385576 PMID:11385577 PMID:11425413 PMID:11875755 PMID:11910337 More... NCBI chr16:50,693,587...50,733,077
Ensembl chr16:50,693,588...50,734,041
JBrowse link
G PRKCQ protein kinase C theta IAGP ClinVar Annotator: match by term: Inflammatory bowel disease 1 ClinVar NCBI chr10:6,393,038...6,580,646
Ensembl chr10:6,427,143...6,580,301
JBrowse link
inflammatory bowel disease 10 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATG16L1 autophagy related 16 like 1 IAGP ClinVar Annotator: match by term: Inflammatory bowel disease 10, susceptibility to ClinVar
OMIM
PMID:17200669 PMID:17435756 PMID:18438405 PMID:18852889 PMID:19337756 More... NCBI chr 2:233,251,647...233,295,674
Ensembl chr 2:233,210,051...233,295,674
JBrowse link
inflammatory bowel disease 12 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GNAI2 G protein subunit alpha i2 ISS OMIM:612241 MouseDO NCBI chr 3:50,227,068...50,259,362
Ensembl chr 3:50,226,292...50,259,362
JBrowse link
inflammatory bowel disease 13 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCB1 ATP binding cassette subfamily B member 1 IAGP ClinVar Annotator: match by term: Inflammatory bowel disease 13 OMIM
ClinVar
PMID:14610718 PMID:16321621 PMID:19891551 PMID:20707787 PMID:22992668 More... NCBI chr 7:87,503,017...87,713,295
Ensembl chr 7:87,503,017...87,713,323
JBrowse link
inflammatory bowel disease 14 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IRF5 interferon regulatory factor 5 IAGP OMIM NCBI chr 7:128,937,032...128,950,038
Ensembl chr 7:128,937,457...128,950,038
JBrowse link
inflammatory bowel disease 16 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TNFSF15 TNF superfamily member 15 ISS OMIM:612259 MouseDO NCBI chr 9:114,784,635...114,806,039
Ensembl chr 9:114,784,652...114,806,039
JBrowse link
inflammatory bowel disease 17 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IL23R interleukin 23 receptor IAGP ClinVar Annotator: match by term: Inflammatory bowel disease 17, protection against OMIM
ClinVar
PMID:12023369 PMID:17068223 PMID:17447842 PMID:17587057 PMID:17786191 More... NCBI chr 1:67,138,639...67,259,979
Ensembl chr 1:67,138,907...67,259,979
JBrowse link
inflammatory bowel disease 19 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IRGM immunity related GTPase M IAGP ClinVar Annotator: match by term: Inflammatory bowel disease 19 ClinVar
OMIM
PMID:17554261 PMID:18985712 PMID:19174780 PMID:21278745 NCBI chr 5:150,846,521...150,902,402
Ensembl chr 5:150,846,523...150,900,736
JBrowse link
inflammatory bowel disease 25 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IL10RB interleukin 10 receptor subunit beta IAGP ClinVar Annotator: match by term: Inflammatory bowel disease 25, autosomal recessive ClinVar
OMIM
PMID:9536098 PMID:16199547 PMID:16757563 PMID:17576681 PMID:19890111 More... NCBI chr21:33,266,367...33,297,221
Ensembl chr21:33,266,367...33,310,187
JBrowse link
inflammatory bowel disease 28 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARCN1 archain 1 IAGP ClinVar Annotator: match by term: Inflammatory bowel disease 28, autosomal recessive ClinVar PMID:1635567 PMID:8490660 PMID:15546002 PMID:17277165 PMID:24216686 More... NCBI chr11:118,572,396...118,603,033
Ensembl chr11:118,572,390...118,603,033
JBrowse link
G ATP5MG ATP synthase membrane subunit g IAGP ClinVar Annotator: match by term: Inflammatory bowel disease 28, autosomal recessive ClinVar PMID:1635567 PMID:8490660 PMID:15546002 PMID:17277165 PMID:24216686 More... NCBI chr11:118,401,606...118,409,847
Ensembl chr11:118,401,606...118,431,496
JBrowse link
G BCL9L BCL9 like IAGP ClinVar Annotator: match by term: Inflammatory bowel disease 28, autosomal recessive ClinVar PMID:1635567 PMID:8490660 PMID:15546002 PMID:17277165 PMID:24216686 More... NCBI chr11:118,896,136...118,926,071
Ensembl chr11:118,893,875...118,925,926
JBrowse link
G CD3D CD3d molecule IAGP ClinVar Annotator: match by term: Inflammatory bowel disease 28, autosomal recessive ClinVar PMID:1635567 PMID:8490660 PMID:15546002 PMID:17277165 PMID:24216686 More... NCBI chr11:118,338,954...118,342,705
Ensembl chr11:118,339,075...118,342,705
JBrowse link
G CD3E CD3e molecule IAGP ClinVar Annotator: match by term: Inflammatory bowel disease 28, autosomal recessive ClinVar PMID:1635567 PMID:8490660 PMID:15546002 PMID:17277165 PMID:24216686 More... NCBI chr11:118,304,730...118,316,173
Ensembl chr11:118,304,730...118,316,175
JBrowse link
G CD3G CD3g molecule IAGP ClinVar Annotator: match by term: Inflammatory bowel disease 28, autosomal recessive ClinVar PMID:1635567 PMID:8490660 PMID:15546002 PMID:17277165 PMID:24216686 More... NCBI chr11:118,344,344...118,355,161
Ensembl chr11:118,344,344...118,355,161
JBrowse link
G CENATAC centrosomal AT-AC splicing factor IAGP ClinVar Annotator: match by term: Inflammatory bowel disease 28, autosomal recessive ClinVar PMID:1635567 PMID:8490660 PMID:15546002 PMID:17277165 PMID:24216686 More... NCBI chr11:118,998,138...119,015,793
Ensembl chr11:118,998,138...119,015,793
JBrowse link
G CXCR5 C-X-C motif chemokine receptor 5 IAGP ClinVar Annotator: match by term: Inflammatory bowel disease 28, autosomal recessive ClinVar PMID:1635567 PMID:8490660 PMID:15546002 PMID:17277165 PMID:24216686 More... NCBI chr11:118,883,892...118,897,787
Ensembl chr11:118,883,892...118,897,787
JBrowse link
G DDX6 DEAD-box helicase 6 IAGP ClinVar Annotator: match by term: Inflammatory bowel disease 28, autosomal recessive ClinVar PMID:1635567 PMID:8490660 PMID:15546002 PMID:17277165 PMID:24216686 More... NCBI chr11:118,747,763...118,791,696
Ensembl chr11:118,747,763...118,791,164
JBrowse link
G DPAGT1 dolichyl-phosphate N-acetylglucosaminephosphotransferase 1 IAGP ClinVar Annotator: match by term: Inflammatory bowel disease 28, autosomal recessive ClinVar PMID:1635567 PMID:8490660 PMID:15546002 PMID:17277165 PMID:24216686 More... NCBI chr11:119,096,505...119,101,884
Ensembl chr11:119,096,025...119,108,331
JBrowse link
G FOXR1 forkhead box R1 IAGP ClinVar Annotator: match by term: Inflammatory bowel disease 28, autosomal recessive ClinVar PMID:1635567 PMID:8490660 PMID:15546002 PMID:17277165 PMID:24216686 More... NCBI chr11:118,971,398...118,981,601
Ensembl chr11:118,971,712...118,981,287
JBrowse link
G H2AX H2A.X variant histone IAGP ClinVar Annotator: match by term: Inflammatory bowel disease 28, autosomal recessive ClinVar PMID:1635567 PMID:8490660 PMID:15546002 PMID:17277165 PMID:24216686 More... NCBI chr11:119,093,874...119,095,465
Ensembl chr11:119,093,854...119,095,467
JBrowse link
G HMBS hydroxymethylbilane synthase IAGP ClinVar Annotator: match by term: Inflammatory bowel disease 28, autosomal recessive ClinVar PMID:1635567 PMID:8490660 PMID:15546002 PMID:17277165 PMID:24216686 More... NCBI chr11:119,084,864...119,093,549
Ensembl chr11:119,084,866...119,093,549
JBrowse link
G HYOU1 hypoxia up-regulated 1 IAGP ClinVar Annotator: match by term: Inflammatory bowel disease 28, autosomal recessive ClinVar PMID:1635567 PMID:8490660 PMID:15546002 PMID:17277165 PMID:24216686 More... NCBI chr11:119,044,187...119,057,205
Ensembl chr11:119,044,188...119,057,227
JBrowse link
G IFT46 intraflagellar transport 46 IAGP ClinVar Annotator: match by term: Inflammatory bowel disease 28, autosomal recessive ClinVar PMID:1635567 PMID:8490660 PMID:15546002 PMID:17277165 PMID:24216686 More... NCBI chr11:118,544,536...118,576,456
Ensembl chr11:118,544,528...118,572,970
JBrowse link
G IL10RA interleukin 10 receptor subunit alpha IAGP ClinVar Annotator: match by term: Inflammatory bowel disease 28, autosomal recessive ClinVar
OMIM
PMID:1635567 PMID:8490660 PMID:9536098 PMID:15546002 PMID:17277165 More... NCBI chr11:117,986,394...118,003,037
Ensembl chr11:117,986,370...118,003,037
JBrowse link
G JAML junction adhesion molecule like IAGP ClinVar Annotator: match by term: Inflammatory bowel disease 28, autosomal recessive ClinVar PMID:1635567 PMID:8490660 PMID:15546002 PMID:17277165 PMID:24216686 More... NCBI chr11:118,193,725...118,225,089
Ensembl chr11:118,193,725...118,225,094
JBrowse link
G KMT2A lysine methyltransferase 2A IAGP ClinVar Annotator: match by term: Inflammatory bowel disease 28, autosomal recessive ClinVar PMID:1635567 PMID:8490660 PMID:15546002 PMID:17277165 PMID:24216686 More... NCBI chr11:118,436,492...118,526,832
Ensembl chr11:118,436,490...118,526,832
JBrowse link
G MPZL2 myelin protein zero like 2 IAGP ClinVar Annotator: match by term: Inflammatory bowel disease 28, autosomal recessive ClinVar PMID:1635567 PMID:8490660 PMID:15546002 PMID:17277165 PMID:24216686 More... NCBI chr11:118,253,416...118,264,297
Ensembl chr11:118,253,416...118,264,536
JBrowse link
G MPZL3 myelin protein zero like 3 IAGP ClinVar Annotator: match by term: Inflammatory bowel disease 28, autosomal recessive ClinVar PMID:1635567 PMID:8490660 PMID:15546002 PMID:17277165 PMID:24216686 More... NCBI chr11:118,226,690...118,252,365
Ensembl chr11:118,226,690...118,252,365
JBrowse link
G PHLDB1 pleckstrin homology like domain family B member 1 IAGP ClinVar Annotator: match by term: Inflammatory bowel disease 28, autosomal recessive ClinVar PMID:1635567 PMID:8490660 PMID:15546002 PMID:17277165 PMID:24216686 More... NCBI chr11:118,606,296...118,658,028
Ensembl chr11:118,606,440...118,658,031
JBrowse link
G RPS25 ribosomal protein S25 IAGP ClinVar Annotator: match by term: Inflammatory bowel disease 28, autosomal recessive ClinVar PMID:1635567 PMID:8490660 PMID:15546002 PMID:17277165 PMID:24216686 More... NCBI chr11:119,015,717...119,018,343
Ensembl chr11:119,015,712...119,018,691
JBrowse link
G SCN2B sodium voltage-gated channel beta subunit 2 IAGP ClinVar Annotator: match by term: Inflammatory bowel disease 28, autosomal recessive ClinVar PMID:1635567 PMID:8490660 PMID:15546002 PMID:17277165 PMID:24216686 More... NCBI chr11:118,162,806...118,176,639
Ensembl chr11:118,162,806...118,176,639
JBrowse link
G SCN4B sodium voltage-gated channel beta subunit 4 IAGP ClinVar Annotator: match by term: Inflammatory bowel disease 28, autosomal recessive ClinVar PMID:1635567 PMID:8490660 PMID:15546002 PMID:17277165 PMID:24216686 More... NCBI chr11:118,133,377...118,152,823
Ensembl chr11:118,133,377...118,152,888
JBrowse link
G SLC37A4 solute carrier family 37 member 4 IAGP ClinVar Annotator: match by term: Inflammatory bowel disease 28, autosomal recessive ClinVar PMID:1635567 PMID:8490660 PMID:15546002 PMID:17277165 PMID:24216686 More... NCBI chr11:119,024,112...119,030,877
Ensembl chr11:119,024,114...119,030,906
JBrowse link
G SMIM35 small integral membrane protein 35 IAGP ClinVar Annotator: match by term: Inflammatory bowel disease 28, autosomal recessive ClinVar NCBI chr11:118,000,027...118,089,911
Ensembl chr11:118,003,634...118,088,299
JBrowse link
G TMEM25 transmembrane protein 25 IAGP ClinVar Annotator: match by term: Inflammatory bowel disease 28, autosomal recessive ClinVar PMID:1635567 PMID:8490660 PMID:15546002 PMID:17277165 PMID:24216686 More... NCBI chr11:118,531,189...118,547,286
Ensembl chr11:118,531,041...118,547,280
JBrowse link
G TMPRSS4 transmembrane serine protease 4 IAGP ClinVar Annotator: match by term: Inflammatory bowel disease 28, autosomal recessive ClinVar PMID:1635567 PMID:8490660 PMID:15546002 PMID:17277165 PMID:24216686 More... NCBI chr11:118,077,016...118,125,505
Ensembl chr11:118,077,012...118,121,890
JBrowse link
G TRAPPC4 trafficking protein particle complex subunit 4 IAGP ClinVar Annotator: match by term: Inflammatory bowel disease 28, autosomal recessive ClinVar PMID:1635567 PMID:8490660 PMID:15546002 PMID:17277165 PMID:24216686 More... NCBI chr11:119,018,766...119,024,134
Ensembl chr11:119,018,763...119,025,454
JBrowse link
G TREH trehalase IAGP ClinVar Annotator: match by term: Inflammatory bowel disease 28, autosomal recessive ClinVar PMID:1635567 PMID:8490660 PMID:15546002 PMID:17277165 PMID:24216686 More... NCBI chr11:118,657,316...118,679,650
Ensembl chr11:118,657,316...118,679,690
JBrowse link
G TTC36 tetratricopeptide repeat domain 36 IAGP ClinVar Annotator: match by term: Inflammatory bowel disease 28, autosomal recessive ClinVar PMID:1635567 PMID:8490660 PMID:15546002 PMID:17277165 PMID:24216686 More... NCBI chr11:118,527,474...118,530,993
Ensembl chr11:118,527,472...118,531,197
JBrowse link
G UBE4A ubiquitination factor E4A IAGP ClinVar Annotator: match by term: Inflammatory bowel disease 28, autosomal recessive ClinVar PMID:1635567 PMID:8490660 PMID:15546002 PMID:17277165 PMID:24216686 More... NCBI chr11:118,359,600...118,399,211
Ensembl chr11:118,359,600...118,399,211
JBrowse link
G UPK2 uroplakin 2 IAGP ClinVar Annotator: match by term: Inflammatory bowel disease 28, autosomal recessive ClinVar PMID:1635567 PMID:8490660 PMID:15546002 PMID:17277165 PMID:24216686 More... NCBI chr11:118,956,298...118,958,559
Ensembl chr11:118,925,164...118,958,559
JBrowse link
G VPS11 VPS11 core subunit of CORVET and HOPS complexes IAGP ClinVar Annotator: match by term: Inflammatory bowel disease 28, autosomal recessive ClinVar PMID:1635567 PMID:8490660 PMID:15546002 PMID:17277165 PMID:24216686 More... NCBI chr11:119,067,792...119,081,972
Ensembl chr11:119,067,818...119,081,972
JBrowse link
inflammatory bowel disease 29 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G INAVA innate immunity activator IAGP ClinVar Annotator: match by term: INFLAMMATORY BOWEL DISEASE 29 OMIM
ClinVar
PMID:21983784 PMID:25741868 PMID:29420262 NCBI chr 1:200,891,074...200,915,742
Ensembl chr 1:200,891,048...200,915,742
JBrowse link
inflammatory bowel disease 30 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CARD8 caspase recruitment domain family member 8 IAGP ClinVar Annotator: match by term: INFLAMMATORY BOWEL DISEASE (CROHN DISEASE) 30 OMIM
ClinVar
PMID:29408806 NCBI chr19:48,203,148...48,256,264
Ensembl chr19:48,180,770...48,255,946
JBrowse link
Inflammatory Bowel Disease 31 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IL37 interleukin 37 IAGP OMIM NCBI chr 2:112,911,165...112,918,882
Ensembl chr 2:112,911,165...112,918,882
JBrowse link
inflammatory bowel disease 5 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MIR3936HG MIR3936 host gene IAGP ClinVar Annotator: match by term: Inflammatory bowel disease 5 ClinVar PMID:15107849 PMID:16333318 PMID:17213842 NCBI chr 5:132,311,276...132,369,916
Ensembl chr 5:132,311,285...132,370,170
JBrowse link
G SLC22A5 solute carrier family 22 member 5 IAGP ClinVar Annotator: match by term: Inflammatory bowel disease 5 ClinVar PMID:15107849 PMID:16333318 PMID:17213842 NCBI chr 5:132,369,704...132,395,614
Ensembl chr 5:132,369,710...132,395,613
JBrowse link
INFLAMMATORY BOWEL DISEASE, IMMUNODEFICIENCY, AND ENCEPHALOPATHY term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TGFB1 transforming growth factor beta 1 IAGP ClinVar Annotator: match by term: INFLAMMATORY BOWEL DISEASE, IMMUNODEFICIENCY, AND ENCEPHALOPATHY
ClinVar Annotator: match by term: Inflammatory bowel disease, immunodeficiency, and encephalopathy
OMIM
ClinVar
PMID:25741868 PMID:29483653 NCBI chr19:41,330,323...41,353,922
Ensembl chr19:41,301,587...41,353,922
JBrowse link
ischemic colitis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SERPINE1 serpin family E member 1 susceptibility IAGP DNA:polymorphism:promoter:rs1799768 (human) RGD PMID:25656775 RGD:13208543 NCBI chr 7:101,127,104...101,139,247
Ensembl chr 7:101,127,104...101,139,247
JBrowse link
G VEGFA vascular endothelial growth factor A IEP RGD PMID:15770733 RGD:1580570 NCBI chr 6:43,770,209...43,786,487
Ensembl chr 6:43,770,184...43,786,487
JBrowse link
Neonatal Inflammatory Skin and Bowel Disease 1 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADAM17 ADAM metallopeptidase domain 17 IAGP ClinVar Annotator: match by term: Inflammatory skin and bowel disease, neonatal 1 ClinVar
OMIM
PMID:9536098 PMID:17576681 PMID:22010916 PMID:25741868 PMID:25804906 More... NCBI chr 2:9,488,486...9,555,830
Ensembl chr 2:9,488,486...9,556,732
JBrowse link
G IAH1 isoamyl acetate hydrolyzing esterase 1 (putative) IAGP ClinVar Annotator: match by term: Inflammatory skin and bowel disease, neonatal 1 ClinVar PMID:9536098 PMID:17576681 PMID:22010916 PMID:25741868 PMID:25804906 More... NCBI chr 2:9,474,532...9,512,403
Ensembl chr 2:9,473,658...9,496,543
JBrowse link
Neonatal Inflammatory Skin and Bowel Disease 2 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EGFR epidermal growth factor receptor IAGP ClinVar Annotator: match by term: Inflammatory skin and bowel disease, neonatal, 2 ClinVar
OMIM
PMID:24691054 PMID:25741868 NCBI chr 7:55,019,017...55,211,628
Ensembl chr 7:55,019,017...55,211,628
JBrowse link
Pediatric Crohn's Disease term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CYP3A5 cytochrome P450 family 3 subfamily A member 5 IEP mRNA:increased expression:duodenum:non-inflamed tissue RGD PMID:16917230 RGD:5685614 NCBI chr 7:99,648,194...99,679,996
Ensembl chr 7:99,648,194...99,679,998
JBrowse link
G F2 coagulation factor II, thrombin IEP RGD PMID:21287673 RGD:5147769 NCBI chr11:46,719,213...46,739,506
Ensembl chr11:46,719,196...46,739,506
JBrowse link
G MIR155 microRNA 155 IEP miRNA:increased expression:duodenal mucosa RGD PMID:27468194 RGD:25671466 NCBI chr21:25,573,980...25,574,044
Ensembl chr21:25,573,980...25,574,044
JBrowse link
G TNF tumor necrosis factor IMP RGD PMID:11321389 RGD:7394742 NCBI chr 6:31,575,565...31,578,336
Ensembl chr 6:31,575,565...31,578,336
JBrowse link
Proctocolitis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IL1RN interleukin 1 receptor antagonist IEP protein:increased concentration:serum (human) RGD PMID:9802632 RGD:6909134 NCBI chr 2:113,099,365...113,134,016
Ensembl chr 2:113,107,214...113,134,016
JBrowse link
ulcerative colitis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCB1 ATP binding cassette subfamily B member 1 susceptibility IAGP RGD PMID:15505619 RGD:1598568 NCBI chr 7:87,503,017...87,713,295
Ensembl chr 7:87,503,017...87,713,323
JBrowse link
G ACSM3 acyl-CoA synthetase medium chain family member 3 IEP mRNA:decreased expression:colonic mucosa RGD PMID:21987487 RGD:7241281 NCBI chr16:20,742,440...20,797,811
Ensembl chr16:20,610,243...20,797,581
JBrowse link
G ADCY7 adenylate cyclase 7 EXP CTD Direct Evidence: marker/mechanism CTD PMID:28067910 NCBI chr16:50,246,138...50,318,135
Ensembl chr16:50,246,137...50,318,135
JBrowse link
G ADIPOQ adiponectin, C1Q and collagen domain containing IEP protein:increased expression:serum RGD PMID:16432373 RGD:5686726 NCBI chr 3:186,842,710...186,858,463
Ensembl chr 3:186,842,704...186,858,463
JBrowse link
G ADRB2 adrenoceptor beta 2 ISO protein:decreased expression:large intestine mucosa,spleen RGD PMID:22772914 RGD:7175063 NCBI chr 5:148,826,611...148,828,623
Ensembl chr 5:148,826,611...148,828,623
JBrowse link
G ALOX12 arachidonate 12-lipoxygenase, 12S type IEP protein:increased expression:large intestine epithelium RGD PMID:7679252 RGD:5509621 NCBI chr17:6,993,791...7,010,754
Ensembl chr17:6,996,049...7,010,754
JBrowse link
G ALPI alkaline phosphatase, intestinal IEP protein:decreased expression:colonic mucosa RGD PMID:22783049 RGD:14367879 NCBI chr 2:232,456,153...232,460,753
Ensembl chr 2:232,456,125...232,460,753
JBrowse link
G APLN apelin IEP protein:increased expression:intestine RGD PMID:17391779 RGD:1626177 NCBI chr  X:129,645,259...129,654,956
Ensembl chr  X:129,645,259...129,654,956
JBrowse link
G APOA4 apolipoprotein A4 severity IAGP DNA:missense mutation:cds:p.Q360H (human) RGD PMID:17206692 RGD:5685660 NCBI chr11:116,820,700...116,823,304
Ensembl chr11:116,820,700...116,823,304
JBrowse link
G AQP7 aquaporin 7 severity IEP mRNA, protein:decreased expression:colon RGD PMID:15338270 RGD:1626292 NCBI chr 9:33,383,135...33,402,677
Ensembl chr 9:33,383,179...33,402,682
JBrowse link
G ARPC2 actin related protein 2/3 complex subunit 2 EXP CTD Direct Evidence: marker/mechanism CTD PMID:18836448 NCBI chr 2:218,217,138...218,254,348
Ensembl chr 2:218,217,141...218,254,356
JBrowse link
G BRINP3 BMP/retinoic acid inducible neural specific 3 IEP mRNA,protein:decreased expression:intestine RGD PMID:25171508 RGD:14398484 NCBI chr 1:190,097,658...190,477,997
Ensembl chr 1:190,097,658...190,478,404
JBrowse link
G BTNL2 butyrophilin like 2 susceptibility IAGP DNA:SNPs: : rs2294881,rs9268480,rs2076523(human) RGD PMID:19659809 RGD:9685032 NCBI chr 6:32,393,339...32,408,879
Ensembl chr 6:32,393,963...32,407,128
JBrowse link
G CARD9 caspase recruitment domain family member 9 EXP CTD Direct Evidence: marker/mechanism CTD PMID:20228799 NCBI chr 9:136,363,956...136,373,669
Ensembl chr 9:136,361,903...136,373,681
JBrowse link
G CASP3 caspase 3 EXP CTD Direct Evidence: marker/mechanism CTD PMID:24055189 NCBI chr 4:184,627,696...184,649,447
Ensembl chr 4:184,627,696...184,649,509
JBrowse link
G CCL20 C-C motif chemokine ligand 20 treatment ISO
EXP
CTD Direct Evidence: marker/mechanism CTD PMID:16306769 PMID:21887805 RGD:7488892 NCBI chr 2:227,813,842...227,817,556
Ensembl chr 2:227,805,739...227,817,564
JBrowse link
G CCL7 C-C motif chemokine ligand 7 IEP protein:increased expression:colon RGD PMID:10433925 RGD:6483784 NCBI chr17:34,270,221...34,272,242
Ensembl chr17:34,270,221...34,272,242
JBrowse link
G CCNY cyclin Y EXP CTD Direct Evidence: marker/mechanism CTD PMID:18438405 NCBI chr10:35,247,025...35,572,667
Ensembl chr10:35,247,025...35,572,669
JBrowse link
G CCR3 C-C motif chemokine receptor 3 IEP RGD PMID:21077277 RGD:6892920 NCBI chr 3:46,210,699...46,266,706
Ensembl chr 3:46,130,890...46,266,706
JBrowse link
G CCR6 C-C motif chemokine receptor 6 EXP CTD Direct Evidence: marker/mechanism CTD PMID:16306769 NCBI chr 6:167,111,795...167,139,141
Ensembl chr 6:167,111,807...167,139,696
JBrowse link
G CD40 CD40 molecule IEP protein:increased expression:intestine, epithelial cell RGD PMID:20133813 RGD:5490590 NCBI chr20:46,118,242...46,129,858
Ensembl chr20:46,118,278...46,129,863
JBrowse link
G CDH1 cadherin 1 EXP CTD Direct Evidence: marker/mechanism CTD PMID:19915572 NCBI chr16:68,737,292...68,835,537
Ensembl chr16:68,737,292...68,835,537
JBrowse link
G CDH3 cadherin 3 EXP CTD Direct Evidence: marker/mechanism CTD PMID:19915572 NCBI chr16:68,644,914...68,727,573
Ensembl chr16:68,636,189...68,727,468
JBrowse link
G CDKN1A cyclin dependent kinase inhibitor 1A disease_progression IEP RGD PMID:15743319 RGD:8662406 NCBI chr 6:36,676,463...36,687,332
Ensembl chr 6:36,676,460...36,687,337
JBrowse link
G COL18A1 collagen type XVIII alpha 1 chain ISO Protein:increased expression:large intestine mucosa RGD PMID:17011522 RGD:1600887 NCBI chr21:45,405,165...45,513,720
Ensembl chr21:45,405,165...45,513,720
JBrowse link
G COL1A1 collagen type I alpha 1 chain IEP RGD PMID:17939044 RGD:5688304 NCBI chr17:50,184,096...50,201,649
Ensembl chr17:50,184,101...50,201,632
JBrowse link
G CXCL8 C-X-C motif chemokine ligand 8 EXP CTD Direct Evidence: marker/mechanism CTD PMID:12133438 PMID:15955209 NCBI chr 4:73,740,569...73,743,716
Ensembl chr 4:73,740,541...73,743,716
JBrowse link
G CXCR1 C-X-C motif chemokine receptor 1 EXP CTD Direct Evidence: marker/mechanism CTD PMID:21297633 NCBI chr 2:218,162,841...218,166,962
Ensembl chr 2:218,162,841...218,166,962
JBrowse link
G CXCR2 C-X-C motif chemokine receptor 2 EXP CTD Direct Evidence: marker/mechanism CTD PMID:21297633 NCBI chr 2:218,125,294...218,137,253
Ensembl chr 2:218,125,289...218,137,251
JBrowse link
G CXCR3 C-X-C motif chemokine receptor 3 IEP mRNA:increased expression:peripheral blood immature plasma cells RGD PMID:21087446 RGD:6480657 NCBI chr  X:71,615,913...71,618,515
Ensembl chr  X:71,615,916...71,618,511
JBrowse link
G CXCR4 C-X-C motif chemokine receptor 4 IEP mRNA:increased expression:peripheral blood immature plasma cells RGD PMID:21087446 RGD:6480657 NCBI chr 2:136,114,349...136,118,149
Ensembl chr 2:136,114,349...136,118,149
JBrowse link
G DAP death associated protein EXP CTD Direct Evidence: marker/mechanism CTD PMID:21297633 NCBI chr 5:10,679,230...10,761,234
Ensembl chr 5:10,679,230...10,761,234
JBrowse link
G DEFA5 defensin alpha 5 EXP CTD Direct Evidence: marker/mechanism CTD PMID:20452301 NCBI chr 8:7,055,304...7,056,739
Ensembl chr 8:7,055,304...7,056,739
JBrowse link
G DEFA6 defensin alpha 6 EXP CTD Direct Evidence: marker/mechanism CTD PMID:20452301 NCBI chr 8:6,924,697...6,926,076
Ensembl chr 8:6,924,697...6,926,076
JBrowse link
G DUOX2 dual oxidase 2 IEP mRNA:increased expression:colon (human) RGD PMID:19759286 RGD:40924645 NCBI chr15:45,092,650...45,114,172
Ensembl chr15:45,092,650...45,114,172
JBrowse link
G ECM1 extracellular matrix protein 1 EXP CTD Direct Evidence: marker/mechanism CTD PMID:18438406 NCBI chr 1:150,508,109...150,513,789
Ensembl chr 1:150,508,062...150,513,789
JBrowse link
G EPHB2 EPH receptor B2 ameliorates ISO RGD PMID:33722292 RGD:127285641 NCBI chr 1:22,710,770...22,921,500
Ensembl chr 1:22,710,839...22,921,500
JBrowse link
G ESR2 estrogen receptor 2 IEP mRNA:decreased expression:colon RGD PMID:21252046 RGD:5508810 NCBI chr14:64,226,707...64,338,631
Ensembl chr14:64,084,232...64,338,112
JBrowse link
G F2 coagulation factor II, thrombin IEP RGD PMID:21593018 RGD:5147754 NCBI chr11:46,719,213...46,739,506
Ensembl chr11:46,719,196...46,739,506
JBrowse link
G FAS Fas cell surface death receptor treatment ISO RGD PMID:30122878 RGD:13792562 NCBI chr10:88,968,429...89,017,059
Ensembl chr10:88,990,531...89,017,059
JBrowse link
G FASLG Fas ligand treatment ISO RGD PMID:30122878 RGD:13792562 NCBI chr 1:172,659,103...172,666,876
Ensembl chr 1:172,659,103...172,666,876
JBrowse link
G FCGR2A Fc fragment of IgG receptor IIa susceptibility IAGP
EXP
DNA:polymorphism: :p.A519G (human)
CTD Direct Evidence: marker/mechanism
DNA:SNP: :rs1801274 (human)
CTD PMID:19915573 PMID:20228799 PMID:20848524 PMID:19915573 RGD:5147918, RGD:5147922 NCBI chr 1:161,505,430...161,524,048
Ensembl chr 1:161,505,430...161,524,013
JBrowse link
G FGF7 fibroblast growth factor 7 IEP mRNA:increased expression:colon, lamina propria, myofibroblasts (human) RGD PMID:9358773 RGD:126928145 NCBI chr15:49,423,242...49,488,775
Ensembl chr15:49,423,237...49,488,775
JBrowse link
G GC GC vitamin D binding protein susceptibility IAGP DNA:polymorphism:cds:p.T420K(human) RGD PMID:21832969 RGD:5509866 NCBI chr 4:71,741,693...71,805,520
Ensembl chr 4:71,741,696...71,804,041
JBrowse link
G GHRL ghrelin and obestatin prepropeptide EXP CTD Direct Evidence: marker/mechanism CTD PMID:19617644 NCBI chr 3:10,285,666...10,292,947
Ensembl chr 3:10,285,666...10,292,947
JBrowse link
G GNA12 G protein subunit alpha 12 EXP CTD Direct Evidence: marker/mechanism CTD PMID:21297633 NCBI chr 7:2,728,105...2,844,308
Ensembl chr 7:2,728,105...2,844,308
JBrowse link
G GPR65 G protein-coupled receptor 65 EXP CTD Direct Evidence: marker/mechanism CTD PMID:30616622 NCBI chr14:88,005,135...88,014,811
Ensembl chr14:88,005,135...88,014,811
JBrowse link
G GPX1 glutathione peroxidase 1 IEP protein:decreased expression:erythrocyte RGD PMID:20186929 RGD:11352754 NCBI chr 3:49,357,176...49,358,353
Ensembl chr 3:49,357,176...49,358,353
JBrowse link
G GSTM1 glutathione S-transferase mu 1 susceptibility IAGP DNA:deletion: : RGD PMID:17565649 PMID:28626742 PMID:26604430 RGD:5490554, RGD:14700999, RGD:11538341 NCBI chr 1:109,687,817...109,693,745
Ensembl chr 1:109,687,814...109,709,039
JBrowse link
G GSTT1 glutathione S-transferase theta 1 susceptibility IAGP DNA:deletion: : RGD PMID:17565649 PMID:26604430 RGD:5490554, RGD:11538341
G HERC2 HECT and RLD domain containing E3 ubiquitin protein ligase 2 EXP CTD Direct Evidence: marker/mechanism CTD PMID:18438405 NCBI chr15:28,111,040...28,322,179
Ensembl chr15:28,111,040...28,322,179
JBrowse link
G HLA-DQB1 major histocompatibility complex, class II, DQ beta 1 IAGP RGD PMID:31038770 RGD:14865009 NCBI chr 6:32,659,467...32,666,657
Ensembl chr 6:32,659,467...32,668,383
JBrowse link
G HLA-DRB1 major histocompatibility complex, class II, DR beta 1 EXP CTD Direct Evidence: marker/mechanism CTD PMID:25559196 NCBI chr 6:32,578,775...32,589,848
Ensembl chr 6:32,578,769...32,589,848
JBrowse link
G HNF4A hepatocyte nuclear factor 4 alpha EXP CTD Direct Evidence: marker/mechanism CTD PMID:19915572 NCBI chr20:44,355,699...44,434,596
Ensembl chr20:44,355,700...44,434,596
JBrowse link
G HNMT histamine N-methyltransferase IEP RGD PMID:18340362 RGD:5509777 NCBI chr 2:137,964,068...138,016,364
Ensembl chr 2:137,964,020...138,016,364
JBrowse link
G HSPA4 heat shock protein family A (Hsp70) member 4 IEP protein:increased expression:colon mucosa, epithelium (human) RGD PMID:22297444 RGD:5688753 NCBI chr 5:133,052,013...133,106,449
Ensembl chr 5:133,052,013...133,106,449
JBrowse link
G ICAM1 intercellular adhesion molecule 1 ISO
EXP
mRNA:increased expression:substantia nigra (rat)
CTD Direct Evidence: marker/mechanism
CTD PMID:15553846 PMID:20584104 RGD:4145388 NCBI chr19:10,271,120...10,286,615
Ensembl chr19:10,271,093...10,286,615
JBrowse link
G ICOSLG inducible T cell costimulator ligand EXP CTD Direct Evidence: marker/mechanism CTD PMID:20228799 NCBI chr21:44,216,979...44,240,943
Ensembl chr21:44,217,014...44,240,966
JBrowse link
G IGF1R insulin like growth factor 1 receptor IEP protein:altered expression:colon RGD PMID:18938767 RGD:5686432 NCBI chr15:98,648,539...98,964,530
Ensembl chr15:98,648,539...98,964,530
JBrowse link
G IGF2 insulin like growth factor 2 disease_progression IEP RGD PMID:16088202 RGD:5509966 NCBI chr11:2,129,117...2,149,566
Ensembl chr11:2,129,112...2,141,238
JBrowse link
G IKZF1 IKAROS family zinc finger 1 EXP CTD Direct Evidence: marker/mechanism CTD PMID:20228799 NCBI chr 7:50,303,453...50,405,101
Ensembl chr 7:50,304,068...50,405,101
JBrowse link
G IL10 interleukin 10 EXP
IEP
CTD Direct Evidence: marker/mechanism CTD PMID:18836448 PMID:20228799 PMID:26660358 PMID:28120341 RGD:14975255, RGD:14975153 NCBI chr 1:206,767,602...206,772,494
Ensembl chr 1:206,767,602...206,774,541
JBrowse link
G IL12B interleukin 12B EXP CTD Direct Evidence: marker/mechanism CTD PMID:18438406 PMID:20228799 PMID:21297633 NCBI chr 5:159,314,780...159,330,487
Ensembl chr 5:159,314,780...159,330,487
JBrowse link
G IL17REL interleukin 17 receptor E like EXP CTD Direct Evidence: marker/mechanism CTD PMID:20228798 NCBI chr22:49,991,811...50,013,827
Ensembl chr22:49,994,513...50,012,659
JBrowse link
G IL18RAP interleukin 18 receptor accessory protein EXP CTD Direct Evidence: marker/mechanism CTD PMID:20228799 NCBI chr 2:102,418,550...102,452,568
Ensembl chr 2:102,418,689...102,452,565
JBrowse link
G IL1B interleukin 1 beta ISO
EXP
protein:increased expression:lung
CTD Direct Evidence: marker/mechanism
CTD PMID:12133438 PMID:15955209 PMID:20452301 PMID:22119283 PMID:24812904 RGD:10450593 NCBI chr 2:112,829,751...112,836,843
Ensembl chr 2:112,829,751...112,836,816
JBrowse link
G IL1R2 interleukin 1 receptor type 2 EXP CTD Direct Evidence: marker/mechanism CTD PMID:21297633 NCBI chr 2:101,991,805...102,028,544
Ensembl chr 2:101,991,960...102,028,544
JBrowse link
G IL1RN interleukin 1 receptor antagonist IAGP DNA:repeats:intron:IVS2+914_1000dup IL1RN*2 (human) RGD PMID:8119534 RGD:6909136 NCBI chr 2:113,099,365...113,134,016
Ensembl chr 2:113,107,214...113,134,016
JBrowse link
G IL23R interleukin 23 receptor IAGP
EXP
DNA:SNP,Haplotype: :rs1884444(human)
CTD Direct Evidence: marker/mechanism
CTD PMID:18438406 PMID:19122664 PMID:20228799 PMID:23093364 RGD:8549574 NCBI chr 1:67,138,639...67,259,979
Ensembl chr 1:67,138,907...67,259,979
JBrowse link
G IL33 interleukin 33 severity
treatment
IEP
ISO
mRNA:increased expression:sigmoid colon RGD PMID:25112700 PMID:21037074 PMID:28802904 RGD:39938951, RGD:40813742, RGD:39938966 NCBI chr 9:6,214,591...6,257,983
Ensembl chr 9:6,215,786...6,257,983
JBrowse link
G IL7R interleukin 7 receptor EXP CTD Direct Evidence: marker/mechanism CTD PMID:21297633 NCBI chr 5:35,856,891...35,879,603
Ensembl chr 5:35,852,695...35,879,603
JBrowse link
G IRF5 interferon regulatory factor 5 EXP CTD Direct Evidence: marker/mechanism CTD PMID:21297633 NCBI chr 7:128,937,032...128,950,038
Ensembl chr 7:128,937,457...128,950,038
JBrowse link
G IRGM immunity related GTPase M EXP CTD Direct Evidence: marker/mechanism CTD PMID:20228799 NCBI chr 5:150,846,521...150,902,402
Ensembl chr 5:150,846,523...150,900,736
JBrowse link
G JAK2 Janus kinase 2 IAGP
EXP
DNA:SNP: :rs10758669 (human)
CTD Direct Evidence: marker/mechanism
CTD PMID:20228799 PMID:21297633 PMID:22269120 RGD:6483020 NCBI chr 9:4,984,390...5,129,948
Ensembl chr 9:4,984,390...5,129,948
JBrowse link
G KDR kinase insert domain receptor IEP protein:increased expression:colon RGD PMID:19013462 RGD:5684406 NCBI chr 4:55,078,481...55,125,595
Ensembl chr 4:55,078,481...55,125,595
JBrowse link
G KIF21B kinesin family member 21B EXP CTD Direct Evidence: marker/mechanism CTD PMID:20228799 NCBI chr 1:200,969,390...201,023,714
Ensembl chr 1:200,969,390...201,023,714
JBrowse link
G LAMB1 laminin subunit beta 1 EXP CTD Direct Evidence: marker/mechanism CTD PMID:19915572 NCBI chr 7:107,923,799...108,003,176
Ensembl chr 7:107,923,799...108,003,213
JBrowse link
G LSP1 lymphocyte specific protein 1 EXP CTD Direct Evidence: marker/mechanism CTD PMID:21297633 NCBI chr11:1,853,084...1,892,263
Ensembl chr11:1,850,904...1,892,267
JBrowse link
G LTF lactotransferrin EXP CTD Direct Evidence: therapeutic CTD PMID:16640825 NCBI chr 3:46,435,645...46,485,234
Ensembl chr 3:46,435,645...46,485,234
JBrowse link
G MASP2 MBL associated serine protease 2 EXP CTD Direct Evidence: marker/mechanism CTD PMID:12904520 NCBI chr 1:11,026,523...11,047,239
Ensembl chr 1:11,026,523...11,047,239
JBrowse link
G MIR155 microRNA 155 IEP miRNA:decreased expression:feces
miRNA:increased expression:colon
RGD PMID:30927737 PMID:29668922 PMID:29325325 PMID:29438285 RGD:21079443, RGD:24922213, RGD:24922207, RGD:21403682 NCBI chr21:25,573,980...25,574,044
Ensembl chr21:25,573,980...25,574,044
JBrowse link
G MIR31 microRNA 31 IEP miRNA:increased expression:colon RGD PMID:29438285 RGD:21403682 NCBI chr 9:21,512,115...21,512,185
Ensembl chr 9:21,512,115...21,512,185
JBrowse link
G MMP1 matrix metallopeptidase 1 ISO RGD PMID:18837084 RGD:7207395 NCBI chr11:102,789,919...102,798,160
Ensembl chr11:102,789,401...102,798,160
JBrowse link
G MMP9 matrix metallopeptidase 9 EXP CTD Direct Evidence: marker/mechanism CTD PMID:22119283 NCBI chr20:46,008,908...46,016,561
Ensembl chr20:46,008,908...46,016,561
JBrowse link
G MPO myeloperoxidase EXP CTD Direct Evidence: marker/mechanism CTD PMID:20380826 PMID:22119283 PMID:24055189 NCBI chr17:58,269,855...58,280,935
Ensembl chr17:58,269,855...58,280,935
JBrowse link
G MST1 macrophage stimulating 1 EXP CTD Direct Evidence: marker/mechanism CTD PMID:18438406 PMID:20228799 NCBI chr 3:49,683,947...49,689,523
Ensembl chr 3:49,683,947...49,689,501
JBrowse link
G MTRR 5-methyltetrahydrofolate-homocysteine methyltransferase reductase susceptibility IAGP DNA:polymorphism: :66A>G (human) RGD PMID:21947961 RGD:5508217 NCBI chr 5:7,851,186...7,901,124
Ensembl chr 5:7,851,186...7,906,025
JBrowse link
G MUC2 mucin 2, oligomeric mucus/gel-forming ISO mRNA:altered expression: : RGD PMID:12870797 RGD:2324685 NCBI chr11:1,074,875...1,110,508
Ensembl chr11:1,074,875...1,110,511
JBrowse link
G NKX2-3 NK2 homeobox 3 EXP CTD Direct Evidence: marker/mechanism CTD PMID:18438405 PMID:18438406 PMID:20228799 NCBI chr10:99,532,942...99,536,524
Ensembl chr10:99,532,942...99,536,524
JBrowse link
G NOD2 nucleotide binding oligomerization domain containing 2 EXP CTD Direct Evidence: marker/mechanism CTD PMID:20452301 NCBI chr16:50,693,587...50,733,077
Ensembl chr16:50,693,588...50,734,041
JBrowse link
G ORMDL3 ORMDL sphingolipid biosynthesis regulator 3 EXP CTD Direct Evidence: marker/mechanism CTD PMID:20228799 NCBI chr17:39,921,041...39,927,601
Ensembl chr17:39,921,041...39,927,601
JBrowse link
G PON1 paraoxonase 1 IEP mRNA:decreased expression:colon RGD PMID:17664137 RGD:5509924 NCBI chr 7:95,297,676...95,324,532
Ensembl chr 7:95,297,676...95,324,532
JBrowse link
G PON3 paraoxonase 3 IEP mRNA:decreased expression:colon RGD PMID:17664137 RGD:5509924 NCBI chr 7:95,359,872...95,396,375
Ensembl chr 7:95,359,872...95,396,375
JBrowse link
G PRDM1 PR/SET domain 1 EXP CTD Direct Evidence: marker/mechanism CTD PMID:21297633 NCBI chr 6:106,046,729...106,109,938
Ensembl chr 6:105,993,463...106,109,939
JBrowse link
G PSMG1 proteasome assembly chaperone 1 EXP CTD Direct Evidence: marker/mechanism CTD PMID:20228799 NCBI chr21:39,174,769...39,183,514
Ensembl chr21:39,174,769...39,183,488
JBrowse link
G PTGER4 prostaglandin E receptor 4 IAGP RGD PMID:21818367 RGD:6483532 NCBI chr 5:40,679,915...40,740,936
Ensembl chr 5:40,679,915...40,693,735
JBrowse link
G PTGS1 prostaglandin-endoperoxide synthase 1 ISO RGD PMID:17429720 RGD:2300267 NCBI chr 9:122,369,906...122,395,703
Ensembl chr 9:122,370,530...122,395,703
JBrowse link
G PTGS2 prostaglandin-endoperoxide synthase 2 ISO RGD PMID:17429720 RGD:2300267 NCBI chr 1:186,671,791...186,680,423
Ensembl chr 1:186,671,791...186,680,922
JBrowse link
G PTPN2 protein tyrosine phosphatase non-receptor type 2 EXP CTD Direct Evidence: marker/mechanism CTD PMID:18438405 NCBI chr18:12,785,478...12,884,351
Ensembl chr18:12,785,478...12,929,643
JBrowse link
G RELA RELA proto-oncogene, NF-kB subunit EXP CTD Direct Evidence: marker/mechanism CTD PMID:15955209 NCBI chr11:65,653,601...65,662,946
Ensembl chr11:65,653,597...65,663,090
JBrowse link
G RIPK2 receptor interacting serine/threonine kinase 2 EXP CTD Direct Evidence: marker/mechanism CTD PMID:20452301 NCBI chr 8:89,757,816...89,791,064
Ensembl chr 8:89,757,806...89,791,064
JBrowse link
G SELL selectin L IAGP DNA:polymorphism: :p.F206L (human) RGD PMID:19212205 RGD:13464267 NCBI chr 1:169,690,667...169,711,620
Ensembl chr 1:169,690,665...169,711,702
JBrowse link
G SELP selectin P IEP protein:increased expression:serum RGD PMID:21526498 RGD:6218993 NCBI chr 1:169,588,849...169,630,125
Ensembl chr 1:169,588,849...169,630,193
JBrowse link
G SLC11A1 solute carrier family 11 member 1 IAGP
EXP
DNA:transition, repeat:promoter:-237C>T (human)
CTD Direct Evidence: marker/mechanism
DNA:polymorphism:promoter (human)
CTD PMID:16059695 PMID:18340647 PMID:11929588 RGD:5684939, RGD:5684968 NCBI chr 2:218,381,766...218,396,894
Ensembl chr 2:218,382,029...218,396,894
JBrowse link
G SLC26A3 solute carrier family 26 member 3 EXP CTD Direct Evidence: marker/mechanism CTD PMID:19915573 NCBI chr 7:107,765,469...107,803,223
Ensembl chr 7:107,765,467...107,803,225
JBrowse link
G SPHK1 sphingosine kinase 1 EXP CTD Direct Evidence: marker/mechanism CTD PMID:24055189 NCBI chr17:76,383,204...76,387,855
Ensembl chr17:76,376,584...76,387,860
JBrowse link
G STAT3 signal transducer and activator of transcription 3 IAGP
EXP
DNA:SNP: :rs744166 (human)
CTD Direct Evidence: marker/mechanism
CTD PMID:18438405 PMID:20228799 PMID:22269120 RGD:6483020 NCBI chr17:42,313,324...42,388,502
Ensembl chr17:42,313,324...42,388,540
JBrowse link
G THBD thrombomodulin IEP protein:decreased expression:colon, blood vessel RGD PMID:17557119 RGD:5685011 NCBI chr20:23,045,633...23,049,672
Ensembl chr20:23,045,633...23,049,672
JBrowse link
G TNF tumor necrosis factor treatment ISO
IEP
EXP
CTD Direct Evidence: marker/mechanism
protein:increased expression:lung
CTD PMID:19617644 PMID:20452301 PMID:22119283 PMID:25204186 PMID:28120341 More... RGD:10450577, RGD:14975153, RGD:10450593 NCBI chr 6:31,575,565...31,578,336
Ensembl chr 6:31,575,565...31,578,336
JBrowse link
G TNFSF15 TNF superfamily member 15 EXP CTD Direct Evidence: marker/mechanism CTD PMID:20228799 NCBI chr 9:114,784,635...114,806,039
Ensembl chr 9:114,784,652...114,806,039
JBrowse link
G VCAM1 vascular cell adhesion molecule 1 EXP CTD Direct Evidence: marker/mechanism CTD PMID:15553846 NCBI chr 1:100,719,742...100,739,045
Ensembl chr 1:100,719,742...100,739,045
JBrowse link
G VEGFA vascular endothelial growth factor A IEP protein:increased expression:colon, plasma RGD PMID:19013462 RGD:5684406 NCBI chr 6:43,770,209...43,786,487
Ensembl chr 6:43,770,184...43,786,487
JBrowse link
G VIP vasoactive intestinal peptide severity IEP mRNA:decreased expression:colon RGD PMID:22143367 RGD:5685619 NCBI chr 6:152,750,797...152,759,765
Ensembl chr 6:152,750,797...152,759,765
JBrowse link
G VIPR1 vasoactive intestinal peptide receptor 1 IEP RGD PMID:17611633 RGD:5685618 NCBI chr 3:42,489,299...42,537,573
Ensembl chr 3:42,489,299...42,537,573
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  disease 20257
    disease of anatomical entity 18858
      gastrointestinal system disease 6205
        intestinal disease 2554
          inflammatory bowel disease 374
            Crohn's disease + 112
            INFLAMMATORY BOWEL DISEASE, IMMUNODEFICIENCY, AND ENCEPHALOPATHY 1
            Inflammatory Bowel Disease 31 1
            Neonatal Inflammatory Skin and Bowel Disease + 3
            colitis + 236
            inflammatory bowel disease 1 4
            inflammatory bowel disease 10 1
            inflammatory bowel disease 11 0
            inflammatory bowel disease 12 1
            inflammatory bowel disease 13 1
            inflammatory bowel disease 14 1
            inflammatory bowel disease 15 0
            inflammatory bowel disease 16 1
            inflammatory bowel disease 17 1
            inflammatory bowel disease 18 0
            inflammatory bowel disease 19 1
            inflammatory bowel disease 2 0
            inflammatory bowel disease 20 0
            inflammatory bowel disease 21 0
            inflammatory bowel disease 22 0
            inflammatory bowel disease 23 0
            inflammatory bowel disease 24 0
            inflammatory bowel disease 25 1
            inflammatory bowel disease 26 0
            inflammatory bowel disease 27 0
            inflammatory bowel disease 28 34
            inflammatory bowel disease 29 1
            inflammatory bowel disease 3 0
            inflammatory bowel disease 30 1
            inflammatory bowel disease 4 0
            inflammatory bowel disease 5 2
            inflammatory bowel disease 6 0
            inflammatory bowel disease 7 0
            inflammatory bowel disease 8 0
            inflammatory bowel disease 9 0
            ulcerative colitis + 114
Path 2
Term Annotations click to browse term
  disease 20257
    disease of anatomical entity 18858
      Immune & Inflammatory Diseases 3974
        Inflammation 2236
          gastroenteritis 457
            inflammatory bowel disease 374
              Crohn's disease + 112
              INFLAMMATORY BOWEL DISEASE, IMMUNODEFICIENCY, AND ENCEPHALOPATHY 1
              Inflammatory Bowel Disease 31 1
              Neonatal Inflammatory Skin and Bowel Disease + 3
              colitis + 236
              inflammatory bowel disease 1 4
              inflammatory bowel disease 10 1
              inflammatory bowel disease 11 0
              inflammatory bowel disease 12 1
              inflammatory bowel disease 13 1
              inflammatory bowel disease 14 1
              inflammatory bowel disease 15 0
              inflammatory bowel disease 16 1
              inflammatory bowel disease 17 1
              inflammatory bowel disease 18 0
              inflammatory bowel disease 19 1
              inflammatory bowel disease 2 0
              inflammatory bowel disease 20 0
              inflammatory bowel disease 21 0
              inflammatory bowel disease 22 0
              inflammatory bowel disease 23 0
              inflammatory bowel disease 24 0
              inflammatory bowel disease 25 1
              inflammatory bowel disease 26 0
              inflammatory bowel disease 27 0
              inflammatory bowel disease 28 34
              inflammatory bowel disease 29 1
              inflammatory bowel disease 3 0
              inflammatory bowel disease 30 1
              inflammatory bowel disease 4 0
              inflammatory bowel disease 5 2
              inflammatory bowel disease 6 0
              inflammatory bowel disease 7 0
              inflammatory bowel disease 8 0
              inflammatory bowel disease 9 0
              ulcerative colitis + 114
paths to the root