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ONTOLOGY REPORT - ANNOTATIONS


Term:commensal bacterial infectious disease
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Accession:DOID:0050339 term browser browse the term
Definition:A bacterial infectious disease that results_in infection by bacteria which are part of the normal human flora when one or more of the defense mechanisms designed to restrict them from the usually sterile internal tissues are breached by accident, by intent (surgery), or by an underlying metabolic or an infectious disorder. (DO)
Synonyms:primary_id: RDO:9002545
For additional species annotation, visit the Alliance of Genome Resources.


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chlamydia term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ccr5 C-C motif chemokine receptor 5 JBrowse link 8 133,192,398 133,215,599 RGD:8549760
G Cd40 CD40 molecule JBrowse link 3 161,519,789 161,534,943 RGD:5132268
G Icam1 intercellular adhesion molecule 1 JBrowse link 8 22,035,287 22,047,049 RGD:4145507
G Ifng interferon gamma JBrowse link 7 61,337,383 61,341,419 RGD:11554173
G Il13 interleukin 13 JBrowse link 10 38,982,909 38,985,466 RGD:5684365
G Il17a interleukin 17A JBrowse link 9 26,841,299 26,844,786 RGD:4888528
RGD:4889101
G Tnf tumor necrosis factor JBrowse link 20 5,189,382 5,192,000 RGD:11554173
toxic shock syndrome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G A2m alpha-2-macroglobulin JBrowse link 4 154,309,426 154,359,138 RGD:10046036
G Adk adenosine kinase JBrowse link 15 3,033,535 3,435,888 RGD:6482670
G Adm adrenomedullin JBrowse link 1 175,443,189 175,447,260 RGD:1625310
RGD:1642599
G Adrb2 adrenoceptor beta 2 JBrowse link 18 57,513,792 57,515,834 RGD:8548487
RGD:8548529
G Ager advanced glycosylation end product-specific receptor JBrowse link 20 4,363,152 4,366,079 RGD:6767566
G Aqp1 aquaporin 1 JBrowse link 4 85,551,503 85,563,683 RGD:11554173
G C5ar1 complement C5a receptor 1 JBrowse link 1 78,186,777 78,195,132 RGD:11554173
G Cckbr cholecystokinin B receptor JBrowse link 1 170,262,218 170,272,298 RGD:2311332
G Ccl2 C-C motif chemokine ligand 2 JBrowse link 10 69,412,065 69,413,863 RGD:14995949
G Elane elastase, neutrophil expressed JBrowse link 7 12,638,320 12,640,168 RGD:10450579
G Eno2 enolase 2 JBrowse link 4 157,285,192 157,294,090 RGD:2293748
G Fancc FA complementation group C JBrowse link 17 826,512 955,703 RGD:11045879
G Gc GC, vitamin D binding protein JBrowse link 14 20,267,023 20,302,577 RGD:11554173
G Hmox1 heme oxygenase 1 JBrowse link 19 14,508,634 14,515,455 RGD:4145362
G Hspa1b heat shock protein family A (Hsp70) member 1B JBrowse link 20 4,877,638 4,880,112 RGD:5147601
G Il10 interleukin 10 JBrowse link 13 47,738,933 47,743,392 RGD:1598471
RGD:11049456
G Il19 interleukin 19 JBrowse link 13 47,663,592 47,677,869 RGD:5037232
G Il1rn interleukin 1 receptor antagonist JBrowse link 3 1,449,778 1,468,624 RGD:8551736
RGD:11522756
G Il20ra interleukin 20 receptor subunit alpha JBrowse link 1 15,180,328 15,222,785 RGD:5037232
G Il20rb interleukin 20 receptor subunit beta JBrowse link 8 108,745,906 108,778,561 RGD:5037232
G Il6 interleukin 6 JBrowse link 4 3,043,231 3,047,807 RGD:11060276
G Mbl2 mannose binding lectin 2 JBrowse link 1 248,435,069 248,442,669 RGD:6903268
G Mc2r melanocortin 2 receptor JBrowse link 18 64,166,959 64,178,729 RGD:6484558
G Mif macrophage migration inhibitory factor JBrowse link 20 13,715,219 13,732,980 RGD:4891013
RGD:1641978
G Mt-nd1 mitochondrially encoded NADH dehydrogenase 1 JBrowse link MT 2,740 3,694 RGD:5148017
G Nos2 nitric oxide synthase 2 JBrowse link 10 66,188,290 66,221,621 RGD:1580268
RGD:11554173
G Nppc natriuretic peptide C JBrowse link 9 93,731,436 93,735,636 RGD:1642297
G Ogg1 8-oxoguanine DNA glycosylase JBrowse link 4 145,282,828 145,289,367 RGD:8657146
G Parp1 poly (ADP-ribose) polymerase 1 JBrowse link 13 98,857,255 98,889,444 RGD:10414070
G Plaur plasminogen activator, urokinase receptor JBrowse link 1 81,328,171 81,344,954 RGD:6484122
G Proc protein C, inactivator of coagulation factors Va and VIIIa JBrowse link 18 24,918,402 24,928,822 RGD:11100015
RGD:11100041
G RT1-Da RT1 class II, locus Da JBrowse link 20 4,127,644 4,132,616 RGD:5490160
RGD:11554173
RGD:5490203
G RT1-Db1 RT1 class II, locus Db1 JBrowse link 20 4,087,621 4,097,190 RGD:5490203
G Sell selectin L JBrowse link 13 82,369,820 82,387,774 RGD:5685700
G Serpinc1 serpin family C member 1 JBrowse link 13 78,806,107 78,820,375 RGD:1599323
G Serpine1 serpin family E member 1 JBrowse link 12 22,641,104 22,651,482 RGD:4144828
G Serping1 serpin family G member 1 JBrowse link 3 72,161,230 72,171,109 RGD:8661646
G Sftpb surfactant protein B JBrowse link 4 100,166,855 100,175,941 RGD:4143404
G Tbxa2r thromboxane A2 receptor JBrowse link 7 11,253,153 11,259,233 RGD:11059599
G Tfpi tissue factor pathway inhibitor JBrowse link 3 71,852,738 71,902,127 RGD:11062085
G Thpo thrombopoietin JBrowse link 11 82,845,676 82,853,439 RGD:10449021
G Tnf tumor necrosis factor JBrowse link 20 5,189,382 5,192,000 RGD:8554872
RGD:1598936
RGD:11554173
RGD:10449465
trachoma term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Il10 interleukin 10 JBrowse link 13 47,738,933 47,743,392 RGD:7365037
RGD:7365085
RGD:7365072
RGD:7365053
G Il17a interleukin 17A JBrowse link 9 26,841,299 26,844,786 RGD:9068420
G RT1-CE13 RT1 class I, locus CE13 RGD:7364877
G Tnf tumor necrosis factor JBrowse link 20 5,189,382 5,192,000 RGD:8548830
Trachomatous Trichiasis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Col1a1 collagen type I alpha 1 chain JBrowse link 10 82,745,801 82,762,790 RGD:8552676

Term paths to the root
Path 1
Term Annotations click to browse term
  disease 15503
    disease by infectious agent 832
      Bacterial Infections and Mycoses 576
        bacterial infectious disease 488
          commensal bacterial infectious disease 50
            Lemierre's syndrome 0
            Ritter's disease 0
            actinobacillosis 0
            actinomycosis + 0
            chlamydia + 10
            gas gangrene 0
            inclusion conjunctivitis 0
            lymphogranuloma venereum 0
            pertussis + 0
            toxic shock syndrome 42
            trachoma + 5
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.